mRNA_C-australica_Contig_1026.6.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_1026.6.1 vs. uniprot
Match: A0A835YZP2_9STRA (Threonylcarbamoyl-AMP synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZP2_9STRA) HSP 1 Score: 243 bits (621), Expect = 2.080e-75 Identity = 139/307 (45.28%), Postives = 185/307 (60.26%), Query Frame = 2 Query: 83 CLLEGTFLTQAFMTPLSPPSREG---STLLEAKRGGTK----APHKCLEIECLEES-DYWKLEPALDILRAGGLGVIPVDSCYVFACDIHSRGGVEKIFTLKKFAAQKKPLSLLCNSISTINQYTGGVDKSLFKRLKKALPGPYTLILPATHE------------VPRVLLQHKAHKKTWKRREIGVRMPDQPICLKILQGLESPLLCSSVPH--ANASDEDEGEDDHTPVRDPVELLTWKKNPK-----------------VDFIVDAGVVEPQPGFTSIGFSTVVDFMGPEPLVIREGLGDPSFL 886 CL + AF PL +R G ++ + GTK A KCL++E E D WKL P ++ L+ GG+GV+P D+CYVFACD+HSR GV++IF LK++ ++KPLSLLC ISTI++++ G+DK LFK LK+ALPGPYT I+PATH+ VPR+LL HK+HKKTWKRRE+GVR+PDQP+ +L+ LE+PL+CSSVP +NA +D+ D W K + VDFIV+AG + TS G STVV+ M P V+R+GLGDP L Sbjct: 13 CLACSSRCVTAFTAPLQQTARTGKVRTSTTVCRAAGTKSRGAAASKCLQVEVDPEGFDNWKLAPIIETLQNGGVGVLPTDTCYVFACDVHSRRGVDRIFQLKQYVGKRKPLSLLCKDISTISKHSDGIDKDLFKVLKRALPGPYTFIVPATHQARTSMSDNHTARVPRMLLDHKSHKKTWKRREVGVRIPDQPVLHAVLEALENPLICSSVPARLSNAPHDDDXXFXXXXXXD----AEWSKAARAQLATDPQQIADAWGHAVDFIVNAGPI------TSAGVSTVVNCMARPPEVLRQGLGDPGLL 309
BLAST of mRNA_C-australica_Contig_1026.6.1 vs. uniprot
Match: A0A7S4D661_HETAK (Threonylcarbamoyl-AMP synthase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D661_HETAK) HSP 1 Score: 196 bits (499), Expect = 2.310e-57 Identity = 105/241 (43.57%), Postives = 148/241 (61.41%), Query Frame = 2 Query: 152 STLLEAKRGGTKAPHKCLEIECLEES-DYWKLEPALDILRAGGLGVIPVDSCYVFACDIHSRGGVEKIFTLKKFAAQKKPLSLLCNSISTINQYTGGVDKSLFKRLKKALPGPYTLILPATHEVPRVLLQHKAHKKTWKRREIGVRMPDQPICLKILQGLESPLLCSSVPHANASDEDEGEDDHTPVRDPVELLTWKKNPKVDFIVDAGVVEPQPGFTSIGFSTVVDFMGPEPLVIREGLG 871 +T L AK+ G L ++ + S D W+L+P +D+++ G +GVIP D+ Y F CD+H+ GVE++ LK + KKPL+LLC IS I++YT DK++FK LK+ PGPYTLI+ A+ EVP+ ++ K H++ WKRRE+GVR+PDQ +C IL L+ PLLCSSVP +S E+ + + W +VDF+VD G + FSTVVD PEP V+REG G Sbjct: 46 NTRLHAKKYGNTYGGDPLYVQIEDPSYDGWRLDPVIDLIKQGAVGVIPTDTSYAFVCDVHNTNGVERMMRLKHAESVKKPLALLCKDISMISKYTKSTDKTVFKLLKQCFPGPYTLIMSASPEVPKGFVESKTHRRLWKRREVGVRVPDQEVCSLILSELDDPLLCSSVP---SSKEEYNMPSYIHREASSIMEAWYN--QVDFVVDCGPIP-----ADFKFSTVVDLTLPEPAVLREGSG 276
BLAST of mRNA_C-australica_Contig_1026.6.1 vs. uniprot
Match: A0A7S0ZI44_9RHOD (Threonylcarbamoyl-AMP synthase n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZI44_9RHOD) HSP 1 Score: 195 bits (496), Expect = 3.210e-57 Identity = 106/251 (42.23%), Postives = 150/251 (59.76%), Query Frame = 2 Query: 140 SREGSTLLEAKRGGTKAPHKCLEIECLEESDY--WKLEPALDILRAGGLGVIPVDSCYVFACDIHSRGGVEKIFTLKKFAAQKKPLSLLCNSISTINQYTGGVDKSLFKRLKKALPGPYTLILPATHEVPRVLLQHKAHKKTWKRREIGVRMPDQPICLKILQGLESPLLCSSVPHANASDEDEGEDDHTPVRDPVELLTWKKNPKVDFIVDAGVVEPQPGFTSIGFSTVVDFMGPEPLVIREGLGDPSFL 886 S++ S L AKR G+ + K E + E +Y WKL+ +L+ G LG+IP DS Y F C + +R G+++I+ LK + KKPLSL+C+++S + +YT +DK +FK L+ ALPGPYT ILPA VPRV+L+HK H+K WKRRE+G+R+P+ CL IL+ LE PLL SS+ + E++ + +D L + VDFIV G + P ST++D VIREG GD S L Sbjct: 31 SKDSSIYLAAKRSGSASTAKVAEYVDITEGEYDLWKLDSIPKMLKEGALGIIPTDSSYSFVCTMSNREGMDRIYQLKNLSGTKKPLSLICSNLSMVQKYTHSIDKPMFKMLRAALPGPYTFILPANSSVPRVILEHKVHRKVWKRREVGIRVPNDMYCLAILEQLEEPLLVSSI---------QDEENESKSQDCPGALLDRWGSSVDFIVGVGERKKHP-------STIIDCTKIPYEVIREGSGDLSIL 265
BLAST of mRNA_C-australica_Contig_1026.6.1 vs. uniprot
Match: A0A7J7IFU6_9RHOD (Threonylcarbamoyl-AMP synthase n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IFU6_9RHOD) HSP 1 Score: 186 bits (473), Expect = 1.570e-53 Identity = 114/253 (45.06%), Postives = 157/253 (62.06%), Query Frame = 2 Query: 146 EGSTLLEAKRGGTKAPHKCLEIECLEE-SDYWKLEPALDILR---AGGLGVIPVDSCYVFACDIHSRGGVEKIFTLKKFAAQ-KKPLSLLCNSISTINQYTGGVDKSLFKRLKKALPGPYTLILPATHEVPRVLLQHKAHKKTWKRREIGVRMPDQPICLKILQGLES-PLLCSSVPHANASDEDEGEDDHTPVRDPVELLT-WKKNPKVDFIVDAGVVEPQPGFTSIGFSTVVDFMGPEPLVIREGLGDPSF 883 EG+ +A R G K + L IE E +D W+LEP ++LR G +G++P D+ Y F C++HSR GVE+I+ LKK +KPLSLLC + STI +YT +DK FK L+ LPGPYT ILPATHEVPRV+++++ H+K WKRRE+G+R P +P C ++ L+ LL SSVP + S+EDE DP ++L W++ +VDFI+ AG +S STVVD + V+REGLG F Sbjct: 23 EGNLTSDASRTGKKRETR-LHIEVSGEGNDLWRLEPVFELLRDPSRGAVGILPTDTSYAFVCNLHSRAGVERIYALKKTPPSVRKPLSLLCRNHSTIQRYTTVMDKRTFKVLRSLLPGPYTFILPATHEVPRVMIENRTHRKMWKRREVGIRWPREPHCQAVMDALDGVALLASSVPDID-SEEDEL------AGDPAKILAQWER--QVDFIISAG------SLSSDMKSTVVDVLRGWQ-VLREGLGYKEF 258
BLAST of mRNA_C-australica_Contig_1026.6.1 vs. uniprot
Match: A0A7S0Y1Y4_HEMAN (Threonylcarbamoyl-AMP synthase n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0Y1Y4_HEMAN) HSP 1 Score: 188 bits (477), Expect = 3.140e-53 Identity = 108/239 (45.19%), Postives = 153/239 (64.02%), Query Frame = 2 Query: 167 AKRGGTKAPHKCLEIECLE-ESDYWKLEPALDILRAGGLGVIPVDSCYVFACDIHSRGGVEKIFTLKKFAAQK--KPLSLLCNSISTINQYTGGVD-KSLFKRLKKALPGPYTLILPATHEVPRVLLQHKAHKKTWKRREIGVRMPDQPICLKILQGLESPLLCSSVPHANASDEDEGEDDHTPVRDPVELLTWKKNPKVDFIVDAGVVEPQPGFTSIGFSTVVDFMGPEPLVIREGLG 871 AK GGTK+ K + +E + + D W+LE A+DI++ GGLGV+P DSCY F D+ SR GV++++ L + +K KPL+LLC+SIS I+ YT V+ K +FK LK LPGPYT I P+T+E+PRV+L+HK H TWKR+EIGVR+PD CL L+GL++P+L SVP E + + P + L W+ ++DF++ G P+ S +TVVD EP ++REG G Sbjct: 133 AKGGGTKS-RKAIYVEIEDADQDAWRLEQAIDIIKQGGLGVVPTDSCYSFVTDVQSRKGVDRLYALVRLENEKVKKPLALLCHSISQISSYTTAVNFKKVFKMLKATLPGPYTFIFPSTNELPRVILEHKKH--TWKRKEIGVRVPDDDCCLSFLKGLDNPVLVYSVPR-------EAKGEMQPFDPALVLDRWEN--EIDFVIANG---PRTEGMS---TTVVDMTNDEPELLREGEG 353
BLAST of mRNA_C-australica_Contig_1026.6.1 vs. uniprot
Match: A0A7S3Z127_9EUKA (Threonylcarbamoyl-AMP synthase n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z127_9EUKA) HSP 1 Score: 180 bits (457), Expect = 5.480e-51 Identity = 105/252 (41.67%), Postives = 150/252 (59.52%), Query Frame = 2 Query: 134 PPSREGSTLLEAKRGGTKAPHK--CLEIECLEESDYWKLEPALDILRAGGLGVIPVDSCYVFACDIHSRGGVEKIFTLKKFAAQ-KKPLSLLCNSISTINQYTGGVD-KSLFKRLKKALPGPYTLILPATHEVPRVLLQHKAHKKTWKRREIGVRMPDQPICLKILQGLESPLLCSSVPHANASDEDEGEDDHTPVRDPVELLTWKKNPKVDFIVDAGVVEPQPGFTSIGFSTVVDFMGPEPL-VIREGLGD 874 PP S +RG P IE E D+WKL+ A+ ++ GG+ V+P DSCY F D++S+ V++I+ LK + KKPLSLLC+SIS I+ +T G+ K+ FK LK LPGPYT ILPA++++PR++L+HK HKK WKR+EIGVR+P +C + L+ + +P+LCSSVP S++ V TW +VDFI+D G + +P +TVVD + L V+REG G+ Sbjct: 53 PPLSSSSPARTTRRGLAVTPRAKYAPTIEIEGEWDFWKLDSAVKAVKDGGIVVLPTDSCYAFVADVNSKEAVQRIYALKNIDPETKKPLSLLCHSISQISDFTSGMQSKAAFKILKSTLPGPYTYILPASNKLPRMILEHKEHKKVWKRKEIGVRVPQDSVCQEFLKLMGNPVLCSSVPSDTESNQ-------LAVEGSEIERTWAH--RVDFIIDNGYRQTEP-------TTVVDMTIEDGLKVLREGAGE 288
BLAST of mRNA_C-australica_Contig_1026.6.1 vs. uniprot
Match: A0A7S2TTY3_9EUKA (Threonylcarbamoyl-AMP synthase n=2 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TTY3_9EUKA) HSP 1 Score: 175 bits (443), Expect = 5.050e-50 Identity = 81/152 (53.29%), Postives = 114/152 (75.00%), Query Frame = 2 Query: 209 IECLEESDYWKLEPALDILRAGGLGVIPVDSCYVFACDIHSRGGVEKIFTLKKFAAQ-KKPLSLLCNSISTINQYTGGVD-KSLFKRLKKALPGPYTLILPATHEVPRVLLQHKAHKKTWKRREIGVRMPDQPICLKILQGLESPLLCSSVP 658 IE E D+WKL+ A+ ++ GG+ V+P DSCY F D++S+ V++I+ LK + KKPLSLLC+SIS I+ YT G+ K+ FK LK LPGPYT ILPA++++PR++L+HK HKK WKR+EIGVR+PD P+C + L+ + +P+LCSSVP Sbjct: 25 IEVEGEWDFWKLDSAVKAVKEGGIVVLPTDSCYAFVADVNSKEAVQRIYALKNIDPETKKPLSLLCHSISQISDYTSGMQSKAAFKILKSTLPGPYTYILPASNKLPRMILEHKEHKKVWKRKEIGVRVPDDPVCQEFLKLIGNPVLCSSVP 176
BLAST of mRNA_C-australica_Contig_1026.6.1 vs. uniprot
Match: A0A7S2H7I3_9STRA (Threonylcarbamoyl-AMP synthase (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H7I3_9STRA) HSP 1 Score: 171 bits (432), Expect = 1.100e-48 Identity = 91/183 (49.73%), Postives = 120/183 (65.57%), Query Frame = 2 Query: 227 SDYWKLEPALDILRAGGLGVIPVDSCYVFACDIHSRGGVEKIFTLKKFAAQKKPLSLLCNSISTINQYTGGVDKSLFKRLKKALPGPYTLILPATHEVPRVLLQHKAHKKTWKRREIGVRMPDQPICLKILQGLESPLLCSSVPHANASDEDEGEDDHTPVRDPVELLTWKKNPKVDFIVDAG 775 SD W+ + A+ +L AGG GVIP D+ Y F + SR G+E+I +K + KKPLSLLC ++TI++YT G+DK LFK LKK LPGPYT ILPA+ ++P+++ Q KK WKR EIGVR+PD PIC I++ + PLLCSSV A D D D + +E TW K KVDF++D G Sbjct: 4 SDVWRADKAVRLLSAGGCGVIPTDTSYSFVTPVSSREGIERILRIKGAESSKKPLSLLCPDLATIDKYTYGIDKQLFKMLKKNLPGPYTFILPASSDLPKMIYQDG--KKKWKRSEIGVRIPDDPICQAIVEQIGEPLLCSSV--APDIDPDNDSDPAFLLCSAMEGDTWCK--KVDFVIDGG 180
BLAST of mRNA_C-australica_Contig_1026.6.1 vs. uniprot
Match: A0A7S0EEL6_9CRYP (Threonylcarbamoyl-AMP synthase n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0EEL6_9CRYP) HSP 1 Score: 172 bits (435), Expect = 4.850e-48 Identity = 106/276 (38.41%), Postives = 162/276 (58.70%), Query Frame = 2 Query: 86 LLEGTFLTQA--FMTPL--SPPSREG-STLLEAKRGGTKAPHKCLEIECLEESDYWKLEPALDILRAGGLGVIPVDSCYVFACDIHSRGGVEKIFTLKKF-AAQKKPLSLLCNSISTINQYTGGVD-KSLFKRLKKALPGPYTLILPATHEVPRVLLQHKAHKKTWKRREIGVRMPDQPICLKILQGLESPLLCSSVPHANASDEDEGEDDHTPVRDPVELLTWKKNPKVDFIVDAGVVEPQPGFTSIGFSTVVDFMGPEPLVIREGLGDPSFLVE 892 LL TF + + ++PL SP R S+L A + +A +EIE + WKL+P IL+ GGLG++P D+ Y F I SR GV +++ LK+ + +KKP ++LC+SIS I++YT ++ KS+FK LK+ LPGPYT I P+T+++PR+++ HK H K WKR+EIGVR+P +CL+++ + +PLLC+ V + +DE+ H + KN +DF+V AG + ST+VD +++REG GD L E Sbjct: 11 LLLATFTSSSSFLLSPLPPSPTCRPAVSSLSRAAKSRQEAGPVFVEIEDIGHG-AWKLDPVAAILKEGGLGIVPTDTSYAFVTSIESREGVSRLYDLKQQDSIKKKPFAILCDSISQISKYTTAINFKSVFKMLKEVLPGPYTFICPSTNDLPRMIIDHKKHAKIWKRKEIGVRIPKDQVCLELISKVGTPLLCAGV---HKTDEESFSVGH--------VFAENKN-LIDFMVAAGERNAES-------STIVDLTKEPAVILREGAGDIDILQE 266
BLAST of mRNA_C-australica_Contig_1026.6.1 vs. uniprot
Match: A0A7S2SRN1_9STRA (Threonylcarbamoyl-AMP synthase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SRN1_9STRA) HSP 1 Score: 172 bits (436), Expect = 8.490e-48 Identity = 99/225 (44.00%), Postives = 139/225 (61.78%), Query Frame = 2 Query: 227 SDYWKLEPALDILRAGGLGVIPVDSCYVFACDIHSRGGVEKIFTLKKFAAQKKPLSLLCNSISTINQYTGGVDKSLFKRLKKALPGPYTLILPATHEVPRVLLQHK-AHKKTWKRREIGVRMPDQPICLKILQGLESPLLCSSVPHANASDEDEGED-----DHTPVRDPVELLTWKKNPKVDFIVDAGVVEPQPGFTSIGFSTVVDFMGPEPLVIREGLGDPSF 883 SD W+ +D+L++GG+GV+P D Y F + SR GVE+I LK A KKPLSLLC +S I++YT G+D+ FK LK+ LPGP+T ILPA+ E+P+++ Q K KK WKR EIG+R+P+ + L IL+ L+ PLLCS++P DED G H+ +RD + + +VDFI+DAG P G ST+ D P+++REGLGD + Sbjct: 97 SDAWRASKVVDLLQSGGVGVLPTDVSYSFVTPVSSRSGVERILRLKGAAGGKKPLSLLCRDLSEIDKYTYGIDRITFKLLKRNLPGPFTFILPASSELPKMIYQDKRGAKKKWKRSEIGIRVPNDGVLLSILEQLDEPLLCSTLP----VDEDSGAQIVCHVSHS-LRDGADWCS-----QVDFILDAGE-RPVDG------STIYDLTQESPVLVREGLGDTTL 304 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1026.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_1026.6.1 >prot_C-australica_Contig_1026.6.1 ID=prot_C-australica_Contig_1026.6.1|Name=mRNA_C-australica_Contig_1026.6.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=278bp MWLWWLVCLLEGTFLTQAFMTPLSPPSREGSTLLEAKRGGTKAPHKCLEIback to top mRNA from alignment at C-australica_Contig_1026:14406..16376+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_1026.6.1 ID=mRNA_C-australica_Contig_1026.6.1|Name=mRNA_C-australica_Contig_1026.6.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1971bp|location=Sequence derived from alignment at C-australica_Contig_1026:14406..16376+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_1026:14406..16376+ >mRNA_C-australica_Contig_1026.6.1 ID=mRNA_C-australica_Contig_1026.6.1|Name=mRNA_C-australica_Contig_1026.6.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=834bp|location=Sequence derived from alignment at C-australica_Contig_1026:14406..16376+ (Chrysoparadoxa australica CS_1217)back to top |