mRNA_C-australica_Contig_10246.1.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_10246.1.1 vs. uniprot
Match: A0A222E254_9RHOB (Porphobilinogen deaminase n=3 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A222E254_9RHOB) HSP 1 Score: 423 bits (1087), Expect = 6.440e-148 Identity = 216/220 (98.18%), Postives = 216/220 (98.18%), Query Frame = 1 Query: 1 PPAQPAGLVLDCYLPREDVRDAFICPDADSLHDLPQGAVVGTSSLRRRAQLLHRRPDLHVVEFRGNLQTRLKKLNEGVARATFLACAGLNRLGMSHVPQSPISADDMLPAVAQGAIGIERRADDTRTQDMLAAIHDTPTALRLAAERAFLAALDGSCETPIAALAEQTGDTLRLRGEILKTDGSAAYAGEITGPVGTGAEMGRSLAADLLAQAGPDFFTH 660 P QPAGLVLDCYLPREDVRDAFICPDADSLHDLPQGAVVGTSSLRRRAQLLHRRPDLHVVEFRGNLQTRLKKLNEGVARATFLACAGLNRLGMSHVPQSPISADDMLPAVAQGAIGIERRADDTRTQDMLAAIHDTPTALRLAAERAFLAALDGSCETPIAALAEQTGDTLRLRGEILKTDGSAAYAGEITGPVGTGAEMGRSLAADLLAQ GP FFTH Sbjct: 97 PTEQPAGLVLDCYLPREDVRDAFICPDADSLHDLPQGAVVGTSSLRRRAQLLHRRPDLHVVEFRGNLQTRLKKLNEGVARATFLACAGLNRLGMSHVPQSPISADDMLPAVAQGAIGIERRADDTRTQDMLAAIHDTPTALRLAAERAFLAALDGSCETPIAALAEQTGDTLRLRGEILKTDGSAAYAGEITGPVGTGAEMGRSLAADLLAQGGPGFFTH 316
BLAST of mRNA_C-australica_Contig_10246.1.1 vs. uniprot
Match: UPI001C9449FF (hydroxymethylbilane synthase n=3 Tax=Rhodobacterales TaxID=204455 RepID=UPI001C9449FF) HSP 1 Score: 362 bits (928), Expect = 1.090e-123 Identity = 184/220 (83.64%), Postives = 198/220 (90.00%), Query Frame = 1 Query: 1 PPAQPAGLVLDCYLPREDVRDAFICPDADSLHDLPQGAVVGTSSLRRRAQLLHRRPDLHVVEFRGNLQTRLKKLNEGVARATFLACAGLNRLGMSHVPQSPISADDMLPAVAQGAIGIERRADDTRTQDMLAAIHDTPTALRLAAERAFLAALDGSCETPIAALAEQTGDTLRLRGEILKTDGSAAYAGEITGPVGTGAEMGRSLAADLLAQAGPDFFTH 660 P QP GL+LDCYLPREDVRDAFICPDA+SLHDLP GAVVGTSSLRRRAQLLHRRPDL VVEFRGNLQTRLKKLN+GVARATFLACAGLNRLGMS VPQ+PIS +DMLPAVAQGAIGIERR DD+R MLAAIHD PT LRL AERAFLAALDGSCETPIAALAE GD+LRLRGEILKTDGSAA++GE+ GPV GA++G++LAADLLAQAG FF H Sbjct: 97 PTEQPEGLILDCYLPREDVRDAFICPDANSLHDLPAGAVVGTSSLRRRAQLLHRRPDLTVVEFRGNLQTRLKKLNDGVARATFLACAGLNRLGMSDVPQTPISTEDMLPAVAQGAIGIERRTDDSRAASMLAAIHDRPTELRLNAERAFLAALDGSCETPIAALAELDGDSLRLRGEILKTDGSAAFSGEVDGPVEQGADLGKALAADLLAQAGDGFFDH 316
BLAST of mRNA_C-australica_Contig_10246.1.1 vs. uniprot
Match: A0A0B3S971_9RHOB (Porphobilinogen deaminase n=7 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A0B3S971_9RHOB) HSP 1 Score: 358 bits (919), Expect = 2.540e-122 Identity = 183/220 (83.18%), Postives = 199/220 (90.45%), Query Frame = 1 Query: 1 PPAQPAGLVLDCYLPREDVRDAFICPDADSLHDLPQGAVVGTSSLRRRAQLLHRRPDLHVVEFRGNLQTRLKKLNEGVARATFLACAGLNRLGMSHVPQSPISADDMLPAVAQGAIGIERRADDTRTQDMLAAIHDTPTALRLAAERAFLAALDGSCETPIAALAEQTGDTLRLRGEILKTDGSAAYAGEITGPVGTGAEMGRSLAADLLAQAGPDFFTH 660 P QP GLVLDCYLPREDVRDAFICP+ S+HDLP+GAVVGTSSLRRRAQLLHRRPDL VVEFRGNLQTRLKKL++GVARATFLACAGLNRLGM+ VPQ+ I+ +DMLPAVAQGAIGIERR+DDTR +DMLAAIHD TALRL AERAFLAALDGSCETPIAALAE GD+LRLRGEILKTDGS A+AGEITGPV GAE+GRSLAADLL++AG FF H Sbjct: 97 PTEQPEGLVLDCYLPREDVRDAFICPEFSSIHDLPEGAVVGTSSLRRRAQLLHRRPDLTVVEFRGNLQTRLKKLHDGVARATFLACAGLNRLGMTEVPQTAIAPEDMLPAVAQGAIGIERRSDDTRARDMLAAIHDATTALRLNAERAFLAALDGSCETPIAALAELDGDSLRLRGEILKTDGSEAHAGEITGPVAQGAELGRSLAADLLSRAGDGFFDH 316
BLAST of mRNA_C-australica_Contig_10246.1.1 vs. uniprot
Match: A0A238JQD3_9RHOB (Porphobilinogen deaminase n=1 Tax=Maliponia aquimaris TaxID=1673631 RepID=A0A238JQD3_9RHOB) HSP 1 Score: 345 bits (885), Expect = 3.740e-117 Identity = 177/220 (80.45%), Postives = 190/220 (86.36%), Query Frame = 1 Query: 1 PPAQPAGLVLDCYLPREDVRDAFICPDADSLHDLPQGAVVGTSSLRRRAQLLHRRPDLHVVEFRGNLQTRLKKLNEGVARATFLACAGLNRLGMSHVPQSPISADDMLPAVAQGAIGIERRADDTRTQDMLAAIHDTPTALRLAAERAFLAALDGSCETPIAALAEQTGDTLRLRGEILKTDGSAAYAGEITGPVGTGAEMGRSLAADLLAQAGPDFFTH 660 P QP GL+LDC LPREDVRDAFICP SLHDLPQGAVVGTSSLRRRAQLLHRRPDL VVEFRGNLQTRLKKL +GVA ATFLACAGLNRLGM+ VP +PI+ +DMLPAVAQGAIGIERR+DD RTQ MLA++HD PT RLAAERAFLAALDGSCETPIA LAE GD LRLRGEILKTDGSAA+AGEI GPV GA++GR LAADLL +AGP F H Sbjct: 97 PTFQPEGLILDCNLPREDVRDAFICPAYRSLHDLPQGAVVGTSSLRRRAQLLHRRPDLKVVEFRGNLQTRLKKLGDGVAAATFLACAGLNRLGMTEVPAAPIATEDMLPAVAQGAIGIERRSDDARTQRMLASVHDAPTGDRLAAERAFLAALDGSCETPIAGLAEIDGDQLRLRGEILKTDGSAAFAGEIRGPVAEGADLGRRLAADLLGRAGPGFLAH 316
BLAST of mRNA_C-australica_Contig_10246.1.1 vs. uniprot
Match: UPI000EF51088 (hydroxymethylbilane synthase n=1 Tax=Tropicibacter sp. LMIT003 TaxID=2267683 RepID=UPI000EF51088) HSP 1 Score: 332 bits (852), Expect = 3.880e-112 Identity = 172/218 (78.90%), Postives = 185/218 (84.86%), Query Frame = 1 Query: 1 PPAQPAGLVLDCYLPREDVRDAFICPDADSLHDLPQGAVVGTSSLRRRAQLLHRRPDLHVVEFRGNLQTRLKKLNEGVARATFLACAGLNRLGMSHVPQSPISADDMLPAVAQGAIGIERRADDTRTQDMLAAIHDTPTALRLAAERAFLAALDGSCETPIAALAEQTGDTLRLRGEILKTDGSAAYAGEITGPVGTGAEMGRSLAADLLAQAGPDFF 654 P QP GLVLDCYLPREDVRDAFI P S+HDLP+GAVVG+SSLRRRAQLLHRRPDL VVEFRGN+QTRLKKL+EGVA ATFLACAGLNRLGM+ VP +PI+ +DMLPAVAQGAIGIERR DD RT MLAAIHDTPT RLAAERAFLA LDGSCETPIAALAE GD LRLRGEILK DGS AYA EITGP+ G E+GR+LA LL +AG FF Sbjct: 98 PTEQPEGLVLDCYLPREDVRDAFIRPGGGSIHDLPEGAVVGSSSLRRRAQLLHRRPDLQVVEFRGNVQTRLKKLHEGVAEATFLACAGLNRLGMADVPMTPIAPEDMLPAVAQGAIGIERRQDDDRTAQMLAAIHDTPTGQRLAAERAFLAQLDGSCETPIAALAELLGDNLRLRGEILKPDGSEAYADEITGPIAEGPELGRALAKRLLDRAGDGFF 315
BLAST of mRNA_C-australica_Contig_10246.1.1 vs. uniprot
Match: A0A0W7WFC7_9RHOB (Porphobilinogen deaminase n=1 Tax=Ponticoccus marisrubri TaxID=1685382 RepID=A0A0W7WFC7_9RHOB) HSP 1 Score: 325 bits (832), Expect = 4.380e-109 Identity = 167/218 (76.61%), Postives = 185/218 (84.86%), Query Frame = 1 Query: 1 PPAQPAGLVLDCYLPREDVRDAFICPDADSLHDLPQGAVVGTSSLRRRAQLLHRRPDLHVVEFRGNLQTRLKKLNEGVARATFLACAGLNRLGMSHVPQSPISADDMLPAVAQGAIGIERRADDTRTQDMLAAIHDTPTALRLAAERAFLAALDGSCETPIAALAEQTGDTLRLRGEILKTDGSAAYAGEITGPVGTGAEMGRSLAADLLAQAGPDFF 654 P QP GLVLDC LPRED RDAFICP A ++ DLP GAVVGTSSLRRR+QLLHRRPDL VVEFRGNLQTRLKKL +GVA ATFLACAGL+RLGM+HVPQ+PI +DMLPAVAQGAIGIERR D+R MLAAIHD TA RLAAERAFLAALDGSCETPIAALAE GD L LRGEIL+ DGS A+AG ++GP+ G E+GR+LAADLL++AGP FF Sbjct: 98 PVEQPEGLVLDCLLPREDTRDAFICPHAATIADLPDGAVVGTSSLRRRSQLLHRRPDLRVVEFRGNLQTRLKKLEDGVAYATFLACAGLSRLGMTHVPQTPIPPEDMLPAVAQGAIGIERRESDSRVAGMLAAIHDLTTAQRLAAERAFLAALDGSCETPIAALAELDGDQLHLRGEILRPDGSEAHAGAVSGPIVEGPELGRALAADLLSRAGPGFF 315
BLAST of mRNA_C-australica_Contig_10246.1.1 vs. uniprot
Match: UPI001ADEEA92 (hydroxymethylbilane synthase n=1 Tax=Sagittula salina TaxID=2820268 RepID=UPI001ADEEA92) HSP 1 Score: 323 bits (827), Expect = 2.280e-108 Identity = 163/220 (74.09%), Postives = 182/220 (82.73%), Query Frame = 1 Query: 1 PPAQPAGLVLDCYLPREDVRDAFICPDADSLHDLPQGAVVGTSSLRRRAQLLHRRPDLHVVEFRGNLQTRLKKLNEGVARATFLACAGLNRLGMSHVPQSPISADDMLPAVAQGAIGIERRADDTRTQDMLAAIHDTPTALRLAAERAFLAALDGSCETPIAALAEQTGDTLRLRGEILKTDGSAAYAGEITGPVGTGAEMGRSLAADLLAQAGPDFFTH 660 P QP GLVLDCYLPRED RDAFICP A+++HDLPQGAVVGTSSLRRRAQLLHRRPDL VVEFRGNLQTRLKKL++GVA ATFLACAGLNR+ + VPQ ++ +DMLPA+AQGAIGIERR DT T+ +L +HD T LR+ AERAFLA LDGSCETPIA LAE GD LRLRGEILKTDGS A+AGEI+G VG G +GR LA LL+ AGPDFF H Sbjct: 96 PTVQPEGLVLDCYLPREDPRDAFICPHAETIHDLPQGAVVGTSSLRRRAQLLHRRPDLQVVEFRGNLQTRLKKLSDGVAYATFLACAGLNRMKIPGVPQHAVAVEDMLPAIAQGAIGIERRIGDTMTESLLVPLHDRDTGLRIDAERAFLARLDGSCETPIAGLAELDGDRLRLRGEILKTDGSTAHAGEISGAVGDGPALGRQLAEQLLSLAGPDFFDH 315
BLAST of mRNA_C-australica_Contig_10246.1.1 vs. uniprot
Match: A0A238KTT0_9RHOB (Porphobilinogen deaminase n=1 Tax=Pelagimonas varians TaxID=696760 RepID=A0A238KTT0_9RHOB) HSP 1 Score: 321 bits (822), Expect = 1.400e-107 Identity = 165/218 (75.69%), Postives = 186/218 (85.32%), Query Frame = 1 Query: 1 PPAQPAGLVLDCYLPREDVRDAFICPDADSLHDLPQGAVVGTSSLRRRAQLLHRRPDLHVVEFRGNLQTRLKKLNEGVARATFLACAGLNRLGMSHVPQSPISADDMLPAVAQGAIGIERRADDTRTQDMLAAIHDTPTALRLAAERAFLAALDGSCETPIAALAEQTGDTLRLRGEILKTDGSAAYAGEITGPVGTGAEMGRSLAADLLAQAGPDFF 654 P QP GL+L+ YLPRED RDAFICP +LHDLP+G+VVGTSSLRRRAQLL RRPDL+VVEFRGN+QTRLKKLNEGVA ATFLA AGLNR+ M+ VP++ I ADDMLPAVAQGAIGIERR DD R + MLA IHDT T +RLAAERAFLA LDGSCETPIAALAE TGDT+RLRGEIL+ DGS YAGEI+GP G E+GR+LA DL+A+AGP+FF Sbjct: 97 PTRQPEGLILETYLPREDTRDAFICPAHATLHDLPEGSVVGTSSLRRRAQLLARRPDLNVVEFRGNVQTRLKKLNEGVAVATFLATAGLNRMNMTEVPRTAIDADDMLPAVAQGAIGIERRLDDARMEMMLAKIHDTTTGVRLAAERAFLAELDGSCETPIAALAELTGDTMRLRGEILRPDGSKFYAGEISGPAVDGPELGRTLAKDLMAKAGPNFF 314
BLAST of mRNA_C-australica_Contig_10246.1.1 vs. uniprot
Match: X6KWI2_9RHOB (Porphobilinogen deaminase n=1 Tax=Rhodobacteraceae bacterium PD-2 TaxID=1169855 RepID=X6KWI2_9RHOB) HSP 1 Score: 319 bits (817), Expect = 7.780e-107 Identity = 162/218 (74.31%), Postives = 184/218 (84.40%), Query Frame = 1 Query: 1 PPAQPAGLVLDCYLPREDVRDAFICPDADSLHDLPQGAVVGTSSLRRRAQLLHRRPDLHVVEFRGNLQTRLKKLNEGVARATFLACAGLNRLGMSHVPQSPISADDMLPAVAQGAIGIERRADDTRTQDMLAAIHDTPTALRLAAERAFLAALDGSCETPIAALAEQTGDTLRLRGEILKTDGSAAYAGEITGPVGTGAEMGRSLAADLLAQAGPDFF 654 P QP GLVLDCYLPREDVRDAFI P + LP+GAVVGTSSLRRRAQLLHRRPDL VVEFRGNLQTRLKKL +GVA+ATFLACAGL R+G++ VP +PI+ +DMLPA+AQGAIGIERRA+DTR MLA IHDTPTA RLAAERAFLAALDGSCETPIA LAE GD+L LRG++L+ DGS A+AG +GP+ GA MGR+LAA+LL +AGP FF Sbjct: 97 PTEQPPGLVLDCYLPREDVRDAFISPAGGGIAGLPEGAVVGTSSLRRRAQLLHRRPDLTVVEFRGNLQTRLKKLEDGVAQATFLACAGLKRMGLTEVPATPIAPEDMLPAIAQGAIGIERRANDTRVAGMLAEIHDTPTAQRLAAERAFLAALDGSCETPIAGLAELDGDSLHLRGQVLRPDGSVAHAGARSGPIAEGAAMGRALAAELLERAGPGFF 314
BLAST of mRNA_C-australica_Contig_10246.1.1 vs. uniprot
Match: A0A7W6DPL6_9RHOB (Porphobilinogen deaminase n=2 Tax=Sagittula marina TaxID=943940 RepID=A0A7W6DPL6_9RHOB) HSP 1 Score: 313 bits (802), Expect = 5.060e-105 Identity = 160/220 (72.73%), Postives = 179/220 (81.36%), Query Frame = 1 Query: 1 PPAQPAGLVLDCYLPREDVRDAFICPDADSLHDLPQGAVVGTSSLRRRAQLLHRRPDLHVVEFRGNLQTRLKKLNEGVARATFLACAGLNRLGMSHVPQSPISADDMLPAVAQGAIGIERRADDTRTQDMLAAIHDTPTALRLAAERAFLAALDGSCETPIAALAEQTGDTLRLRGEILKTDGSAAYAGEITGPVGTGAEMGRSLAADLLAQAGPDFFTH 660 P QP GL+LDCYLPRED RDAFIC AD++HDLPQ AVVGTSSLRRRAQLL+RRPDL VVEFRGNLQTRLKKL +GVA ATFLACAGL R+ + VP +PI DDMLPA+AQGAIGIERR D T+ +LA +H T LRLAAER+FL LDGSCETPIA LAE GD LRLRGEILKTDGS +YAGEI+G + GA +G SLA +LLA+AGPDFF H Sbjct: 65 PTVQPEGLMLDCYLPREDTRDAFICSHADTIHDLPQSAVVGTSSLRRRAQLLNRRPDLEVVEFRGNLQTRLKKLEDGVAFATFLACAGLKRMKIPGVPMTPIDTDDMLPALAQGAIGIERRVGDALTERLLAPLHHHDTGLRLAAERSFLKTLDGSCETPIAGLAELDGDQLRLRGEILKTDGSLSYAGEISGSIKDGAALGESLAKELLAKAGPDFFDH 284 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10246.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_10246.1.1 >prot_C-australica_Contig_10246.1.1 ID=prot_C-australica_Contig_10246.1.1|Name=mRNA_C-australica_Contig_10246.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=221bp PPAQPAGLVLDCYLPREDVRDAFICPDADSLHDLPQGAVVGTSSLRRRAQback to top mRNA from alignment at C-australica_Contig_10246:1..663+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_10246.1.1 ID=mRNA_C-australica_Contig_10246.1.1|Name=mRNA_C-australica_Contig_10246.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=663bp|location=Sequence derived from alignment at C-australica_Contig_10246:1..663+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_10246:1..663+ >mRNA_C-australica_Contig_10246.1.1 ID=mRNA_C-australica_Contig_10246.1.1|Name=mRNA_C-australica_Contig_10246.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=663bp|location=Sequence derived from alignment at C-australica_Contig_10246:1..663+ (Chrysoparadoxa australica CS_1217)back to top |