mRNA_C-australica_Contig_10242.1.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_10242.1.1 vs. uniprot
Match: A0A2E9HZ16_9RHOB (Hint_2 domain-containing protein n=2 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A2E9HZ16_9RHOB) HSP 1 Score: 442 bits (1137), Expect = 1.130e-154 Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 1 Query: 1 MPSTYTASDNEFATASGANLNYNSDWSRFDGAPSNTSNLTITSNEGDLDPNTFETGETYDLKWEGDGGGSIDDAVVIRSDYLGSEQGIIVFEGTNSATGEIAHIVWTPSVDLESWYHSNGGDTYNQPGFWTSNQDGDDFQFACYGKGTMIETPDGPRLVETLRAGDFVLTLDHGPQEILWTHVGDQPLGDADLQSKPVLIGAGALGNNRPTRDLI 645 MPSTYTASDNEFATASGANLNYNSDWSRFDGAPSNTSNLTITSNEGDLDPNTFETGETYDLKWEGDGGGSIDDAVVIRSDYLGSEQGIIVFEGTNSATGEIAHIVWTPSVDLESWYHSNGGDTYNQPGFWTSNQDGDDFQFACYGKGTMIETPDGPRLVETLRAGDFVLTLDHGPQEILWTHVGDQPLGDADLQSKPVLIGAGALGNNRPTRDLI Sbjct: 1 MPSTYTASDNEFATASGANLNYNSDWSRFDGAPSNTSNLTITSNEGDLDPNTFETGETYDLKWEGDGGGSIDDAVVIRSDYLGSEQGIIVFEGTNSATGEIAHIVWTPSVDLESWYHSNGGDTYNQPGFWTSNQDGDDFQFACYGKGTMIETPDGPRLVETLRAGDFVLTLDHGPQEILWTHVGDQPLGDADLQSKPVLIGAGALGNNRPTRDLI 215
BLAST of mRNA_C-australica_Contig_10242.1.1 vs. uniprot
Match: A0A239JPF8_9RHOB (Hint domain-containing protein n=1 Tax=Antarctobacter heliothermus TaxID=74033 RepID=A0A239JPF8_9RHOB) HSP 1 Score: 318 bits (816), Expect = 6.820e-106 Identity = 152/215 (70.70%), Postives = 177/215 (82.33%), Query Frame = 1 Query: 1 MPSTYTASDNEFATASGANLNYNSDWSRFDGAPSNTSNLTITSNEGDLDPNTFETGETYDLKWEGDGGGSIDDAVVIRSDYLGSEQGIIVFEGTNSATGEIAHIVWTPSVDLESWYHSNGGDTYNQPGFWTSNQDGDDFQFACYGKGTMIETPDGPRLVETLRAGDFVLTLDHGPQEILWTHVGDQPLGDADLQSKPVLIGAGALGNNRPTRDLI 645 MP+T+TA D EFAT+SG N+NY +WS FDGAPS TSNL+ITSN+GD DP FE GETYDL W+G+GGG+IDDAV+ RSD L QG+IVFEGTNS TGE+ HIVWTPSV+LESWY+ NGG+T N PGFW+++Q+ DFQF C+ KGT+IETP GPR VE LR GD VLTLDHGPQEILWTH GD PL +AD QSKPVLI AGA G +RPT+DLI Sbjct: 1 MPTTFTAEDTEFATSSGNNVNYGPNWSYFDGAPSTTSNLSITSNDGDTDPGKFEVGETYDLTWDGNGGGAIDDAVITRSDNLEPGQGVIVFEGTNSVTGELVHIVWTPSVNLESWYYDNGGETSNNPGFWSADQESGDFQFVCFAKGTLIETPGGPRAVENLRPGDPVLTLDHGPQEILWTHSGDHPLENADPQSKPVLIRAGAFGPDRPTQDLI 215
BLAST of mRNA_C-australica_Contig_10242.1.1 vs. uniprot
Match: UPI001FF66DE6 (Hint domain-containing protein n=1 Tax=Loktanella sp. F6476L TaxID=2926405 RepID=UPI001FF66DE6) HSP 1 Score: 222 bits (565), Expect = 3.610e-68 Identity = 114/217 (52.53%), Postives = 145/217 (66.82%), Query Frame = 1 Query: 1 MPSTYTASDNEFATASGANLNYNSDWSRFDGAPSNTSNLTITSNEGDLDPNTFETGETYDLKWEGDGGGS-IDDAVVIRSDYLGSEQGIIVFEGTNSATGEIAHIVWTPSVDLESWYHSNGGDTYNQPGFWTSNQDG-DDFQFACYGKGTMIETPDGPRLVETLRAGDFVLTLDHGPQEILWTHVGDQPLGDADLQSKPVLIGAGALGNNRPTRDLI 645 M T+ A DNEFA ASG+N++ + D+S FD P +T+NL ITSN GD P FE GETYDL W G GGG + DA +IRSDY+G +G +VFEGTNS TGE+ +VW+P DLESWY NGG + FWTS+Q+ + +Q C+ +GT+I TPDGPR VE L+ GD V+TLD G I W QPL D +KPVLI A A+G RP+ D++ Sbjct: 1 MTKTFYALDNEFAAASGSNVDVHQDYSYFDHPPGSTTNLEITSNMGDDKPILFEVGETYDLTWSGHGGGGDMQDATIIRSDYVGPGEGAVVFEGTNSVTGELFQMVWSPGFDLESWYWDNGGGPDSPNAFWTSDQNAAETYQAVCFAEGTLITTPDGPRPVEYLQPGDLVVTLDDGSVPIRWVRSDTQPLEDTSPDAKPVLISANAMGKGRPSTDMV 217
BLAST of mRNA_C-australica_Contig_10242.1.1 vs. uniprot
Match: A0A2T6CA65_9RHOB (Hint domain-containing protein n=2 Tax=Sulfitobacter mediterraneus TaxID=83219 RepID=A0A2T6CA65_9RHOB) HSP 1 Score: 219 bits (557), Expect = 3.680e-67 Identity = 119/210 (56.67%), Postives = 144/210 (68.57%), Query Frame = 1 Query: 1 MPSTYTASDNEFATASGANLNYNSDWSRFDGAPSNTSNLTITSNEGDLDPNTFETGETYDLKWEGDGGGSIDDAVVIRSDYLGSEQGIIVFEGTNSATGEIAHIVWTPSVDLESWYHSNGGDTYNQPGFWTSNQDGDDFQFACYGKGTMIETPDGPRLVETLRAGDFVLTLDHGPQEILWTHVGDQPLGDADLQSKPVLIGAGALGNNRP 630 M T+T ++EFA ASG+N+N SD S FD P++TSNLTITSN+GD DP FETGETYD+ WEG GGG+++DA VIRSDYL QG IVFEG NS TGE+ +VWTP+ DLE WY SNGG + FWTS+QD + F + C+ GT I TP G VETLR GD V TLD+ QEILW +G + + A S PV+I G L N RP Sbjct: 1 MIMTFTPPNHEFAAASGSNVNVQSDRSYFDHPPNSTSNLTITSNKGDDDPRNFETGETYDISWEGHGGGNMEDATVIRSDYLQPGQGAIVFEGINSNTGEMFQMVWTPNFDLEEWYWSNGGGPSSPNAFWTSDQDSESFSYVCFTGGTNILTPRGNFPVETLRVGDKVTTLDNSAQEILW--IGKRTVLAAG-SSAPVVINPGFLSNERP 207
BLAST of mRNA_C-australica_Contig_10242.1.1 vs. uniprot
Match: A0A1H2YZX9_9RHOB (Hint domain-containing protein n=1 Tax=Litoreibacter albidus TaxID=670155 RepID=A0A1H2YZX9_9RHOB) HSP 1 Score: 216 bits (549), Expect = 1.250e-65 Identity = 111/216 (51.39%), Postives = 143/216 (66.20%), Query Frame = 1 Query: 1 MPSTYTASDNEFATASGANLNYNSDWSRFDGAPSNTSNLTITSNEGDLDPNTFETGETYDLKWEGDGGGSIDDAVVIRSDYLGSEQGIIVFEGTNSATGEIAHIVWTPSVDLESWYHSNGGDTYNQPGFWTSNQDGDD-FQFACYGKGTMIETPDGPRLVETLRAGDFVLTLDHGPQEILWTHVGDQPLGDADLQSKPVLIGAGALGNNRPTRDLI 645 M T A+D FA +SG+N++ +S FD P++T++LTITSN GD DP+ FE GETYDL W G GGG ++DA +IRSDYLG QG IVFEG NS GE ++WTP D+E WY NGG + F+TS+Q+ + +Q C+ GT I+T DGP VE L+AGD V TLDHG I W +QPL +A +KPVL+ GALG+ RP +DLI Sbjct: 1 MTVTIYAADTSFAASSGSNIDVTPSYSYFDHPPNSTTDLTITSNVGDTDPSLFEVGETYDLTWSGHGGGIMEDATIIRSDYLGPGQGAIVFEGINSVNGEAFQLIWTPGFDVEQWYWDNGGGPSSPNAFYTSDQNATETYQAVCFASGTYIDTADGPAPVENLQAGDMVSTLDHGFAPIRWIRHDEQPLEEAAPDAKPVLVTKGALGSGRPHQDLI 216
BLAST of mRNA_C-australica_Contig_10242.1.1 vs. uniprot
Match: A0A3T0N4N3_9RHOB (Hint_2 domain-containing protein n=1 Tax=Parasedimentitalea marina TaxID=2483033 RepID=A0A3T0N4N3_9RHOB) HSP 1 Score: 213 bits (543), Expect = 4.980e-65 Identity = 111/206 (53.88%), Postives = 146/206 (70.87%), Query Frame = 1 Query: 10 TYTASDNEFATASGANLNYNSDWSRFDGAPSNTSNLTITSNEGDLDPNTFETGETYDLKWEGDGGGSIDDAVVIRSDYLGSEQGIIVFEGTNSATGEIAHIVWTPSVDLESWYHSNGGDTYNQPGFWTSNQDGDDFQFACYGKGTMIETPDGPRLVETLRAGDFVLTLDHGPQEILWTHVGDQPLGDADLQSKPVLIGAGALGNNR 627 T+T D EFA +SG N+N++S +S FD P++TSNLTITSN GD +P FE GETYDL W G+GGG+++DA +IRSDYLG+EQG IVFEG NS++GE+ +VWTP+ DLE W+ NGG + N PGF+TS QD D + + C+ GT + TP G V+ L+ G V TLD+GPQEILW +G + + +S PV+I G LGN R Sbjct: 5 TFTPPDYEFAASSGTNVNFDSYYSTFDYPPNSTSNLTITSNMGDDNPALFEVGETYDLTWGGNGGGTMEDATIIRSDYLGTEQGAIVFEGINSSSGELYQMVWTPNFDLEQWFWDNGGAS-NPPGFYTSEQDADSYLYPCFAAGTCLRTPGGLMRVDDLQPGHMVTTLDNGPQEILW--MGKRTILGVG-KSAPVVINPGLLGNER 206
BLAST of mRNA_C-australica_Contig_10242.1.1 vs. uniprot
Match: A0A6A4RDJ5_9RHOB (Hint_2 domain-containing protein n=3 Tax=Rhodobacterales TaxID=204455 RepID=A0A6A4RDJ5_9RHOB) HSP 1 Score: 208 bits (529), Expect = 4.550e-63 Identity = 108/206 (52.43%), Postives = 144/206 (69.90%), Query Frame = 1 Query: 10 TYTASDNEFATASGANLNYNSDWSRFDGAPSNTSNLTITSNEGDLDPNTFETGETYDLKWEGDGGGSIDDAVVIRSDYLGSEQGIIVFEGTNSATGEIAHIVWTPSVDLESWYHSNGGDTYNQPGFWTSNQDGDDFQFACYGKGTMIETPDGPRLVETLRAGDFVLTLDHGPQEILWTHVGDQPLGDADLQSKPVLIGAGALGNNR 627 T+T D EFA +SG N+N++S +S FD P++TS LTITSN GD +P FE GETYDL W G GGG+++DA++IRSDYLG+EQG IVFEG NS +GE+ +VWTP+ DLE W+ NGG + N PGF+TS QD D + + C+ GT + TPDG V+ L+ G V TLD+GPQ+ILW +G + + +S PV+I G L N + Sbjct: 5 TFTPPDYEFAASSGTNVNFDSYYSTFDYPPNSTSGLTITSNMGDENPALFEVGETYDLSWSGHGGGTMEDAMIIRSDYLGTEQGAIVFEGINSNSGELYQMVWTPNFDLEQWFWDNGGAS-NPPGFYTSEQDADSYLYPCFAAGTCLRTPDGLTRVDDLQPGHMVTTLDNGPQKILW--MGKRTILGVG-KSAPVVINPGLLDNEQ 206
BLAST of mRNA_C-australica_Contig_10242.1.1 vs. uniprot
Match: UPI001BCF6774 (Hint domain-containing protein n=1 Tax=Vannielia litorea TaxID=1217970 RepID=UPI001BCF6774) HSP 1 Score: 174 bits (441), Expect = 1.160e-49 Identity = 104/215 (48.37%), Postives = 134/215 (62.33%), Query Frame = 1 Query: 1 MPSTYTASDNEFATASGANLNYNSDWSRFDGAPSNTSNLTITSNEGDLDPNTFETGETYDLKWEGD-GGGSIDDAVVIRSDYL---GSEQGIIVFEGTNSATGEIAHIVWTPSVDLESWYHSNGGDTYNQPGFWTSNQDG-DDFQFACYGKGTMIETPDGPRLVETLRAGDFVLTLDHGPQEILWTHVGDQPLGDADLQSKPVLIGAGALGNNRP 630 MP T TA D+EF ASGAN+N S FD P++TSNLTITSN GD P F G+TYDL + G+ GGG+++DAVV+RSD++ G + G +VFEG + G+ +VW+P DLE WY N D N PGF+T++QDG + + C+G GT I T DG VE LRAG VLT D+G Q ++W +G Q L + PV AGA GN P Sbjct: 1 MPITITAPDSEFGIASGANVNSGDGTSTFDYPPNSTSNLTITSNTGDSSPYQFSVGDTYDLTYSGNSGGGTLEDAVVVRSDFVDINGDQGGAVVFEGVDG-NGDTIQVVWSPEFDLEQWYWDNH-DPQNPPGFYTTDQDGLQQYGYVCFGFGTRIATEDGMVPVERLRAGQRVLTHDNGAQPVMW--IG-QSLVPGRADAAPVRFDAGAFGNPAP 210
BLAST of mRNA_C-australica_Contig_10242.1.1 vs. uniprot
Match: UPI0016777CBA (Hint domain-containing protein n=1 Tax=Tateyamaria omphalii TaxID=299262 RepID=UPI0016777CBA) HSP 1 Score: 170 bits (431), Expect = 2.550e-48 Identity = 97/211 (45.97%), Postives = 130/211 (61.61%), Query Frame = 1 Query: 1 MPSTYTASDNEFATASGANLNYNSDWSRFDGAPSNTSNLTITSNEGDLDPNTFETGETYDLKWEGDGGGSIDDAVVIRSDYLGSEQGIIVFEGTNSATGEIAHIVWTPSVDLESWYHSNGGDTYNQPGFWTSNQDGDDFQFACYGKGTMIETPDGPRLVETLRAGDFVLTLDHGPQEILWTHVGDQP-LGDADLQSKPVLIGAGALGNNRP 630 M T+ A DNEFA ++G+N+N + S FD PS+T+NL +TS+ D DP FE GETY L ++G+GG +++DA VIRSD L S +G +VFEGTNS GE+ IVW+P+ DL WY N + PGF+T ++ D+ FAC+ GT+I+T GP+ VE + GD V T D Q +LWT P LG A PV + G LG P Sbjct: 1 MSFTFYAEDNEFAASTGSNVNAGTTTSTFDHPPSSTTNLVVTSHADDEDPRLFEVGETYSLSFDGNGGTTLEDATVIRSDTLYSNKGAVVFEGTNS-DGELVQIVWSPNFDLGQWY-DNASSSGGSPGFYTYDRADGDYSFACFASGTLIDTTTGPKPVEQVVPGDLVPTRDGDAQPVLWTARSTVPGLGRA----APVTLDEGVLGARSP 205
BLAST of mRNA_C-australica_Contig_10242.1.1 vs. uniprot
Match: A0A238J9X2_9RHOB (Hint_2 domain-containing protein n=2 Tax=Pelagimonas phthalicica TaxID=1037362 RepID=A0A238J9X2_9RHOB) HSP 1 Score: 166 bits (421), Expect = 6.030e-47 Identity = 92/205 (44.88%), Postives = 128/205 (62.44%), Query Frame = 1 Query: 25 DNEFATASGANLNYNSDWSRFDGAPSNTSNLTITSNEGDLDPNTFETGETYDLKWEGDGGGSIDDAVVIRSDYLGSEQGIIVFEGTNSATGEIAHIVWTPSVDLESWYHSNGGDTYNQPGFWTSNQD-GDDFQFACYGKGTMIETPDGPRLVETLRAGDFVLTLDHGPQEILWTHVGDQPLGDADLQSKPVLIGAGALGNNRPTR 636 DN FA ASG+N+ +SRFD P++TSNL IT+N+GD DP FE G+TYD+ W G GGG+++DAVV+RSD GI+VFEGT+ GE H++WTP DLE+WY +N G + N P F+T++QD D ++ C+ + T I TP G L+ G+ V TL +EILW +G + + + PV GA+GN P + Sbjct: 11 DNSFAVASGSNVGIQPGYSRFDHPPNSTSNLQITTNDGDPDPRVFEVGDTYDVSWSGHGGGNLEDAVVVRSDPAPGNGGIVVFEGTSG--GETVHVIWTPDFDLENWYWTNYGPS-NPPNFYTTDQDPAYDHEYICFERSTQIATPRGYFRAGQLKVGETVCTLGGVAREILW--IGRKTVSGRGAAA-PVRFPKGAIGNFAPIK 209 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10242.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_10242.1.1 >prot_C-australica_Contig_10242.1.1 ID=prot_C-australica_Contig_10242.1.1|Name=mRNA_C-australica_Contig_10242.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=215bp MPSTYTASDNEFATASGANLNYNSDWSRFDGAPSNTSNLTITSNEGDLDPback to top mRNA from alignment at C-australica_Contig_10242:2..646- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_10242.1.1 ID=mRNA_C-australica_Contig_10242.1.1|Name=mRNA_C-australica_Contig_10242.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=645bp|location=Sequence derived from alignment at C-australica_Contig_10242:2..646- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_10242:2..646- >mRNA_C-australica_Contig_10242.1.1 ID=mRNA_C-australica_Contig_10242.1.1|Name=mRNA_C-australica_Contig_10242.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=645bp|location=Sequence derived from alignment at C-australica_Contig_10242:2..646- (Chrysoparadoxa australica CS_1217)back to top |