mRNA_C-australica_Contig_1024.6.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_1024.6.1 vs. uniprot
Match: A0A835YWF1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWF1_9STRA) HSP 1 Score: 166 bits (420), Expect = 1.070e-44 Identity = 91/282 (32.27%), Postives = 158/282 (56.03%), Query Frame = 2 Query: 149 LKKWSMSRDVGDNIARAQQALGDQLALVSELVARKIDRSDVGNVEAALAKVTSVCEFLDETDRRVDALEGGMNRAEGKLATHATSLDTLVETAKKINRELEDKTNISNCLKVQREVTDLHALLDSYTQKSGERIGACEEGLGQLTEEVNELGSIAVGRLEALEAEAKTLATKEETDQK----ADLVLCDGLWGELRHELSCKAWKSDVKNVQEALSLLRDDHARTAKEAGLAIRFVDWFGERGGAYEHNLSAIERKIESLTVD--SHPGARTPFSGRVKFTP 976 L+ W+M R G+++ + ++L LA +A K++RS+V +V+ + +V +V F+D++ RV ALEG + RA + A S D + + ++ L + + + +++R++ +L + ++ ++ GE + L + E G A + E L +E + A +E D K AD+ +CDG+W ELR E+ CKAW + + + E + L D A TAK+A LA+RFV+WF RG AY+HNL+A+E+++ + S R P+SG ++FTP Sbjct: 90 LQLWAMDRQAGEDLWASCRSLQQTLAAQQAALATKLERSEVQHVQHLVGRVAAVAGFMDDSKARVTALEGAVQRAHEQHRLLADSADATKQRVEALHNSLSTRASDHSVAQLERQLENLRDAVAAHERRCGELHASAAATRATLEARLREAGDAA--QRERLASENRREAMADEVDAKLATKADVAICDGMWSELRAEIDCKAWGHEHRGLAERVDGLSSDQAATAKQAALAVRFVNWFSTRGEAYDHNLNAVEKQLHGMATSALSSINQRQPYSGTLRFTP 369
BLAST of mRNA_C-australica_Contig_1024.6.1 vs. uniprot
Match: A0A7S2RP99_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RP99_9STRA) HSP 1 Score: 110 bits (276), Expect = 1.920e-24 Identity = 77/282 (27.30%), Postives = 134/282 (47.52%), Query Frame = 2 Query: 149 LKKWSMSRDVGDNIARAQQALGDQLALVSELVARKIDRSDVGNVEAALAKVTSVCEFLDETDRRVDALEGGMNRAEGKLATHATSLDTL-VETAKKINR--ELEDKTNISNCLKVQREVTDLHALLDSYTQKSG----ERIGACEEGLGQLTEEVNELGSIAVGRLEALEAEAKTLATKEETDQKADLVLCDGLWGELRHELSCKAWKSDVKNVQEALSLLRDDHARTAKEAGLAIRFVDWFGERGGAYEHNLSAIERKIESLTVDSHPGARTPFSGRVKFT 973 L++ S+D GD + Q L +Q+ V +++ K D+ + +EA K+ + +D+T+ +D L AE +L H +L L + ++ N L KT++S + +RE+ +L A ++ + + I C L L S A AL TLAT E + KAD + + +L KA ++ + + L++ A+ AK+ L++RF+DWF +RG AYEHNL A++ + + S P R P+SG+ + + Sbjct: 9 LRRDCASQDFGDGLEAGQLHLQEQMNTVQQMMLGKADKVQLTGMEATCTKLRNYSAHMDDTNDLLDRLGQASASAEEQLTAHERNLAALRSQLSQHANTMASLATKTSLSEESRHRRELEELVAAQCEHSANAEGTMVKEIEECRRHLETLRXXXQRHSSHAESEFNALHTTLDTLATAERMELKADKLQVADALARIHAQLDRKAGVQPFASLADTVDQLQEHQAKHAKQIDLSVRFIDWFSDRGQAYEHNLRALDEHLGKIGKASAPQDRQPYSGQTRLS 290
BLAST of mRNA_C-australica_Contig_1024.6.1 vs. uniprot
Match: D7FQX2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQX2_ECTSI) HSP 1 Score: 88.6 bits (218), Expect = 2.100e-16 Identity = 44/122 (36.07%), Postives = 78/122 (63.93%), Query Frame = 2 Query: 11 TVGDVACANKDAISHLANELRKKASSEEVAQCQGDLDTAMAEKVKDLKKWSMSRDVGDNIARAQQALGDQLALVSELVARKIDRSDVGNVEAALAKVTSVCEFLDETDRRVDALEGGMNRAE 376 TVG+ AN A+ L+ +L +KA ++++ +L+ + E+ + +++W + RD D++ RA + L +L V +++ KIDRS++ N++AA AKV++V +FLD+ RRV LE G+ R E Sbjct: 86 TVGEAVRANGQALLGLSKQLEEKAGRDDLSAKGEELEACIRERERAVRQWGVGRDFADSLGRANRGLAGKLLAVEGVLSTKIDRSELDNMQAACAKVSTVSDFLDDAARRVSTLEAGLERGE 207
BLAST of mRNA_C-australica_Contig_1024.6.1 vs. uniprot
Match: A0A485KW49_9STRA (Aste57867_11888 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KW49_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 2.190e-15 Identity = 79/327 (24.16%), Postives = 153/327 (46.79%), Query Frame = 2 Query: 11 TVGDVACANKDAISHLANELRKKASSEEVAQCQGDLDTAMAEKVKDLKKWSMSRDVGDNIARAQQALGDQLALVSELVARKIDRSDVGNVEAALAKVTSVCEFLDETDRRVDALEGGMNRAEGKLATHATSLDTLVETAKKINRELEDKTNISNCLKVQREVTDLH--------ALLDSYTQKSGERIGACEEGLGQLTEEVNELGSIAVGRLEALEAEAKTLATKEET-DQKADLVLCDGLWGE----LRHELSCKAWKSDVKNVQEALSLLRDDHARTAKEAGLAIRFVDWFGERGGAYEHNLSAIERKIESLTVDSHPGARTPF 952 ++G + AN I L ++R K V +++ +++++ L+K +++ ++ + + Q AL QLA ++ V K+D+ D+ EAA K LD R A+E + + +L D V++ ++++ +T + + L+ VT A +D+ QK I AC E L T+ ++ R++A+ A+T+A +T + + L W + + +L+ KA ++DV L + + + A + +++RF+DWF +RG AYEHNL +E ++++L + R PF Sbjct: 91 SLGSIVAANYKEIVSLREKVRDKVDPATVVDACRRVESTLSDELCALRKDTVNLELLSSWHKDQDALHAQLAALTVQVNSKLDKIDLTRTEAAACK-------LDAFIPRCAAVESSLTQLHSRLD------DLTVQSQREMHDASIQRTLMRHALEELHIVTATSRADWTSAVARVDALVQKCRRHIDACHETLQAHTKRCVAHRAVDCARVDAI---AQTMADHTKTFNLQLQTKLAQAEWTKGMNAVHAQLATKADRADVAATNAHLRRVDEANTHCASQIDVSVRFIDWFFQRGDAYEHNLQLMEAQLKALAMRPPRRRREPF 401
BLAST of mRNA_C-australica_Contig_1024.6.1 vs. uniprot
Match: W4FEK1_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FEK1_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 1.730e-14 Identity = 80/324 (24.69%), Postives = 149/324 (45.99%), Query Frame = 2 Query: 11 TVGDVACANKDAISHLANELRKKASSEEVAQCQGDLDTAMAEKVKDLKKWSMSRDVGDNIARAQQALGDQLALVSELVARKIDRSDVGNVEAALAKVTSVCEFLDETDRRVDALEGGMNRAEGKLATHATSLDTLVETAKKINRELEDKTNISNCLKVQREVTDLHALLDSYTQKSGERIGACEEGLGQLTEEVNELGS---IAVGRL-EALEAEAKTLATKEETDQKADLVLCDGLWGELRHELSCKAWKSDVKNVQEALSLLRDDHARTAKEAGLAIRFVDWFGERGGAYEHNLSAIERKIESLTVDSHPGARTPFSGRVKF 970 ++G + AN I + +L +K + V + ++T M + L+K ++ ++ ++ Q AL ++A + + K+D+ +V VEA +K+ + E +R + L+ + A H L L ETA+ +R + + +++ ++ + T H +D+ QK I C + +E + +V L +ALEA A+ + + E K + EL L KA V ++++ + D R L++RF++WF ERG AYE NL +E +++ L++ R PF GRV+F Sbjct: 84 SLGSIVAANYKEIVSMREKLHRKVEPDVVEEACRRVETNMFSAFESLRKECVNLELLSSLHMDQDALHAKMAALEGQIDSKMDKMEVTRVEAMASKLHAFIPRCSEIERSLQQLDEKLT-ASSATCRHHEQLAAL-ETAQLGHRLADHRADLTT---LRTDTTAAHDAMDAVIQKCQRNIHLCLSKVQVAQRSHSEFAASTRTSVHELADALEAHAQRI--QNELGLKVNSCDWQTRANELEAALETKAPLQAVTSLKKDVDKWADWAGRCDSHVQLSVRFIEWFFERGEAYEANLQLMEAQLKHLSL--RQVTRQPFDGRVRF 398
BLAST of mRNA_C-australica_Contig_1024.6.1 vs. uniprot
Match: A0A024TV69_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TV69_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 7.590e-11 Identity = 67/322 (20.81%), Postives = 134/322 (41.61%), Query Frame = 2 Query: 11 TVGDVACANKDAISHLANELRKKASSEEVAQCQGDLDTAMAEKVKDLKKWSMSRDVGDNIARAQQALGDQLALVSELVARKIDRSDVGNVEAALAKVTSVCEFLDETDRRVDALEGGMNRAEGKLATHATSLDTLVETAKKINRELEDKTNISNCLKVQREVTDLHALLDSYTQKSGERIGACEEGLGQLTEEVNELGSIAVGRLEALE--AEAKTLATKEETDQKADLVLCDGLWGELRHELSCKAWKSDVKNVQEALSLLRDDHARTAKEAGLAIRFVDWFGERGGAYEHNLSAIERKIESLTVDSHPGARTPFSGRVKF 970 T+G + AN I + +L++K + V ++T ++ + L+K ++ ++ + Q L +LA V + K+D+++ ++A + + E + + L + + K H + T ETA + ++ ++ E T A +++ Q E I C L + + + + L L E + ++E D K D E+ + K + + + L + R L++RF+DW+ RG AYEHN+ +E +++ L++ +R PF GRV+F Sbjct: 89 TLGSIVAANYKEIVSMREKLQRKIDAAVVEDACRRVETKLSSALDTLRKDCVTLELISRLHMDQDELHTKLATVEAQIDSKMDKTEATRMDAVATTMHAFIPRCSEIEHSLQQLHEKLAASNAKCRQHDQHVST--ETAHLRQLVSQQHRDVGA---LRAETTAGQATIEAAVQACKENISLCHNKLQTIRQAHADFAASTRSSLRQLTQTGERNFQSLRDELDGKVSRTDWDAQRREMEALVQTKTPLAVTAATKAVVDKLDEWVTRCDAHVQLSLRFIDWYFNRGDAYEHNMQVMEAQLKQLSL--RHVSREPFDGRVRF 403
BLAST of mRNA_C-australica_Contig_1024.6.1 vs. uniprot
Match: A0A7S2BBK8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BBK8_9STRA) HSP 1 Score: 69.3 bits (168), Expect = 3.050e-10 Identity = 38/141 (26.95%), Postives = 69/141 (48.94%), Query Frame = 2 Query: 548 IGACEEGLGQLTEEVNELGSIAVGRLEALEAEAKTLATKEETDQKADLVLCDGLWGELRHELSCKAWKSDVKNVQEALSLLRDDHARTAKEAGLAIRFVDWFGERGGAYEHNLSAIERKIESLTVDSHPGARTPFSGRVKF 970 + C GL ++ E++E + R + + A ++ D K + +L +L KA ++ +Q + L A ++ GL++RF+DWF ERG AYEHN++A++ + L S P R P++ + +F Sbjct: 47 LSECRSGLERINTEISEFEAGTKERFDQMAHMLDQCAVTKQVDLKVNKAEMKVALEDLCRQLEKKAGVDSMEKLQGHVHGLETTSADHTQKIGLSLRFIDWFSERGDAYEHNMNALDGHLGGLAKLSLPQHRQPYTSQTRF 187
BLAST of mRNA_C-australica_Contig_1024.6.1 vs. uniprot
Match: A0A8J2SUQ0_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SUQ0_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 6.570e-10 Identity = 67/280 (23.93%), Postives = 118/280 (42.14%), Query Frame = 2 Query: 206 ALGDQLALVSELVARKIDRSDVGNVEAALAKVTSVCEFLDETDRRVDALEGGMNRAEGKLATHATSLDTLVETAKKINRELEDKTNISNCLKVQREVTDLHALLDSYTQKSGERIGACEEGLGQLTEEVNELGSIA-----VGRLEALEAEAKT--------LATKEE--TDQKADLVLCDGLWGELRHELSCKAWKSDVKNVQEA-----------LSLLRDDHARTAKEAGLAIRFVDWFGERGGAYEHNLSAIERKIESLTVDSHPGARTPFSGRVK 967 A G +L +VA K+D D A ++ V F+D T+ V ALE ++A + + I+ +LE + ++ L QREV + A++ K ER A +E L T +A + +L+ L+ E + LA +E + Q E L+ + V+++ A ++ L + A+ E +A++FVDWF RG YEHN++A++R+++ + + + PFS V+ Sbjct: 170 AFGRRLDATDAVVATKVDGVDEAAFRATCIRLRDVDSFIDRTNATVKALEERASKASDERSH--------------IHEQLEASSVVTAAL--QREVDAIVAVVGEEAVKREERDQALDEALANTTHRDAHAQHVAHHASTLEQLQQLKREVEQGFARVSADLAAEESRASSQSXXXXXXXXXXXEAAAALARRLVDGAVRDLLAAPHGAVAECRGRVARLEETSAKARAELDIALKFVDWFSNRGEGYEHNMTALDRRLDGMVRSAREASAEPFSPSVR 433
BLAST of mRNA_C-australica_Contig_1024.6.1 vs. uniprot
Match: A0A7S2NW91_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NW91_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 2.260e-8 Identity = 51/228 (22.37%), Postives = 109/228 (47.81%), Query Frame = 2 Query: 248 RKIDRSDVG---NVEAALAKVTSVCEFLDETDRRVDALEGGMNRAEGKLA----THATSLDTLVETAKKINRELEDKTNISNCLKVQREVTDLHALLDSYTQKSGERIGACEEGLGQLTEEVNELGSIAVGRLEALEAEAKTLATKEETDQKADLVLCDGLWGELRHELSCKAWKSDVKNVQEALSLLRDDHARTAKEAGLAIRFVDWFGERGGAYEHNLSAIERKIE 910 +KID + N + A + S +F+ + + L+ + + GKLA ++ ++ D ++ T K+I++ + + ++ + L + + T K E L ++ +E+ ++ A + + +++ TK+E ++ +L LR LS A + + + ++ L DD+ T ++A L+ FV+W+G+RG AYEHNL A++ ++ Sbjct: 59 KKIDNFEAEVEFNTDQAEDTLRSHAKFVKSANVAITQLQSSVEKITGKLAGLVESNQSTHDNILNTMKEIDKR-------QDLVVLKERIRSLSLVAEDMTAK--EEFLTVANRLKEVNDEMQQMALQARNQAKTIKSFQVKAFTKDEANRLNGAILS------LRGGLSKTAKQKTLDELTATVNNLTDDYVATRRKAQLSAEFVEWYGKRGDAYEHNLIAVDGHLK 271
BLAST of mRNA_C-australica_Contig_1024.6.1 vs. uniprot
Match: A0A397AZC5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AZC5_9STRA) HSP 1 Score: 58.9 bits (141), Expect = 1.410e-6 Identity = 59/235 (25.11%), Postives = 100/235 (42.55%), Query Frame = 2 Query: 266 DVGNVEAALAKVTSVCEFLDETDRRVDALEGGMNRAEGKLATHATSLDTLVETAKKINRELEDKTNISNCLKVQREVTDLHALLDSYTQKSGERIGACEEGLGQLTEEVNELGSIAVGRLEALEAEAKTLATKEETDQKADLVLCDGLWGELRHELSCKAWKSDVKNVQEALSLLRDDHARTAKEAGLAIRFVDWFGERGGAYEHNLSAIERKIESLTVDSHPGARTPFSGRVKF 970 +V VEA K+ + E +R + L+ + A H L L ETA+ +R + + +++ ++ + T H +D+ QK I C L + V + E A T A+ E L D L + + +A V ++++ + D R L++RF++WF ERG AYE NL +E +++ L++ R PF GRV+F Sbjct: 2 EVTRVEAMATKLHAFIPRCSEIERSLQQLDEKLT-ASSATCRHHEQLAAL-ETAQLGHRLADHRADLTT---LRTDTTAAHDAMDAVIQKCQRNIHLC-------------LSKVQVAQRSHSEFAASTRASVHE--------LADALEAHAQR-IQNEAPLQAVTSLKKDVDKWADWAGRCDSHVQLSVRFIEWFFERGEAYEANLQLMEAQLKHLSL--RQVTRQPFDGRVRF 207 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1024.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_1024.6.1 >prot_C-australica_Contig_1024.6.1 ID=prot_C-australica_Contig_1024.6.1|Name=mRNA_C-australica_Contig_1024.6.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=284bp MAEKVKDLKKWSMSRDVGDNIARAQQALGDQLALVSELVARKIDRSDVGNback to top mRNA from alignment at C-australica_Contig_1024:8582..10326+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_1024.6.1 ID=mRNA_C-australica_Contig_1024.6.1|Name=mRNA_C-australica_Contig_1024.6.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1745bp|location=Sequence derived from alignment at C-australica_Contig_1024:8582..10326+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_1024:8582..10326+ >mRNA_C-australica_Contig_1024.6.1 ID=mRNA_C-australica_Contig_1024.6.1|Name=mRNA_C-australica_Contig_1024.6.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=852bp|location=Sequence derived from alignment at C-australica_Contig_1024:8582..10326+ (Chrysoparadoxa australica CS_1217)back to top |