mRNA_C-australica_Contig_10237.1.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_10237.1.1 vs. uniprot
Match: A3UD34_9PROT (Peptide chain release factor 2 n=4 Tax=Oceanicaulis TaxID=153232 RepID=A3UD34_9PROT) HSP 1 Score: 387 bits (993), Expect = 5.170e-134 Identity = 193/197 (97.97%), Postives = 196/197 (99.49%), Query Frame = 1 Query: 1 LKSITILVKGENAYGWLKTEAGVHRLVRISPYDSSGRRHTSFASVWTYPLVDDTIEIEIEDKDVRVDTYRASGAGGQHINKTDSAVRLTHEPTGIVVACQTDRSQHKNRSNAWTMLRARLYELELQKREEAAQADAESKTDIGWGHQIRSYVLQPYQMVKDLRTQVETSDTQGVLDGDLDDFMGAALAQRVGKSDED 591 LKSITILVKGENAYGWLKTEAGVHRLVRISPYDSSGRRHTSFASVWTYPLVDDTIEIEIEDKDVRVDTYRASGAGGQHINKTDSAVRLTHEPTGIVVACQTDRSQHKNR+NAWTMLRARLYELELQKREEAAQADAESKTDIGWGHQIRSYVLQPYQMVKDLRTQVETSDTQGVLDGDLDDFM AALAQRVGK++ED Sbjct: 120 LKSITILVKGENAYGWLKTEAGVHRLVRISPYDSSGRRHTSFASVWTYPLVDDTIEIEIEDKDVRVDTYRASGAGGQHINKTDSAVRLTHEPTGIVVACQTDRSQHKNRANAWTMLRARLYELELQKREEAAQADAESKTDIGWGHQIRSYVLQPYQMVKDLRTQVETSDTQGVLDGDLDDFMAAALAQRVGKTEED 316
BLAST of mRNA_C-australica_Contig_10237.1.1 vs. uniprot
Match: UPI0012E9E74E (peptide chain release factor 2 n=1 Tax=Woodsholea maritima TaxID=240237 RepID=UPI0012E9E74E) HSP 1 Score: 358 bits (918), Expect = 8.270e-122 Identity = 177/197 (89.85%), Postives = 186/197 (94.42%), Query Frame = 1 Query: 1 LKSITILVKGENAYGWLKTEAGVHRLVRISPYDSSGRRHTSFASVWTYPLVDDTIEIEIEDKDVRVDTYRASGAGGQHINKTDSAVRLTHEPTGIVVACQTDRSQHKNRSNAWTMLRARLYELELQKREEAAQADAESKTDIGWGHQIRSYVLQPYQMVKDLRTQVETSDTQGVLDGDLDDFMGAALAQRVGKSDED 591 LKS T+L+KGENAYGWLKTEAGVHRLVRISP+DSSGRRHTSFASVW YPLVDDTIEIEIE+KDVRVDTYRASGAGGQHINKTDSA+RLTH PTGIVV CQ DRSQHKNR+ AW MLRARLYELELQKREEAAQA AESKTDIGWGHQIRSYVLQPYQMVKDLRTQVETSDTQGVLDGDLD FM AAL+QRVG ++ED Sbjct: 174 LKSATLLIKGENAYGWLKTEAGVHRLVRISPFDSSGRRHTSFASVWAYPLVDDTIEIEIEEKDVRVDTYRASGAGGQHINKTDSAIRLTHIPTGIVVQCQNDRSQHKNRATAWNMLRARLYELELQKREEAAQAQAESKTDIGWGHQIRSYVLQPYQMVKDLRTQVETSDTQGVLDGDLDAFMAAALSQRVGANNED 370
BLAST of mRNA_C-australica_Contig_10237.1.1 vs. uniprot
Match: A0A550KK25_9PROT (Peptide chain release factor 2 n=1 Tax=Glycocaulis profundi TaxID=2518983 RepID=A0A550KK25_9PROT) HSP 1 Score: 353 bits (907), Expect = 4.140e-120 Identity = 173/192 (90.10%), Postives = 181/192 (94.27%), Query Frame = 1 Query: 1 LKSITILVKGENAYGWLKTEAGVHRLVRISPYDSSGRRHTSFASVWTYPLVDDTIEIEIEDKDVRVDTYRASGAGGQHINKTDSAVRLTHEPTGIVVACQTDRSQHKNRSNAWTMLRARLYELELQKREEAAQADAESKTDIGWGHQIRSYVLQPYQMVKDLRTQVETSDTQGVLDGDLDDFMGAALAQRVG 576 +KS+T+L+KGENAYGWLKTEAGVHRLVRISPYDSSGRRHTSFASVW YPLVDDTI IEI DKDVR DT+RASGAGGQH+NKTDSAVRLTHEPTGIVVACQ DRSQHKNR AW MLRARLYELELQKREEAAQA+A+SKTDIGWGHQIRSYVLQPYQMVKDLRT VETSDTQGVLDGDLDDFM AALA RVG Sbjct: 174 IKSVTLLIKGENAYGWLKTEAGVHRLVRISPYDSSGRRHTSFASVWAYPLVDDTINIEILDKDVRTDTFRASGAGGQHVNKTDSAVRLTHEPTGIVVACQADRSQHKNRDRAWEMLRARLYELELQKREEAAQAEADSKTDIGWGHQIRSYVLQPYQMVKDLRTSVETSDTQGVLDGDLDDFMAAALAARVG 365
BLAST of mRNA_C-australica_Contig_10237.1.1 vs. uniprot
Match: A0A5M6ZK06_9PROT (Peptide chain release factor 2 n=1 Tax=Alkalicaulis satelles TaxID=2609175 RepID=A0A5M6ZK06_9PROT) HSP 1 Score: 350 bits (898), Expect = 9.640e-119 Identity = 172/192 (89.58%), Postives = 182/192 (94.79%), Query Frame = 1 Query: 1 LKSITILVKGENAYGWLKTEAGVHRLVRISPYDSSGRRHTSFASVWTYPLVDDTIEIEIEDKDVRVDTYRASGAGGQHINKTDSAVRLTHEPTGIVVACQTDRSQHKNRSNAWTMLRARLYELELQKREEAAQADAESKTDIGWGHQIRSYVLQPYQMVKDLRTQVETSDTQGVLDGDLDDFMGAALAQRVG 576 LKS+T+LVKGENAYGWLKTEAGVHRLVRISPYDSSGRRHTSFASVW YPLVDDTIEIEI++KDVR DTYRASGAGGQH+NKTDSAVRLTH P+GIVVACQ++RSQHKNRS AWTMLRARLYE ELQ+RE AQA A+SKTDIGWGHQIRSYVLQPYQMVKDLRTQVETSDTQGVLDGDLDDFM AALA RVG Sbjct: 174 LKSVTLLVKGENAYGWLKTEAGVHRLVRISPYDSSGRRHTSFASVWAYPLVDDTIEIEIQEKDVRTDTYRASGAGGQHVNKTDSAVRLTHIPSGIVVACQSERSQHKNRSQAWTMLRARLYEQELQRREAEAQAQADSKTDIGWGHQIRSYVLQPYQMVKDLRTQVETSDTQGVLDGDLDDFMAAALAARVG 365
BLAST of mRNA_C-australica_Contig_10237.1.1 vs. uniprot
Match: UPI001EDDE410 (peptide chain release factor 2 n=1 Tax=Shewanella sp. ER-Te-42B-Light TaxID=2872342 RepID=UPI001EDDE410) HSP 1 Score: 344 bits (882), Expect = 1.800e-116 Identity = 170/195 (87.18%), Postives = 181/195 (92.82%), Query Frame = 1 Query: 1 LKSITILVKGENAYGWLKTEAGVHRLVRISPYDSSGRRHTSFASVWTYPLVDDTIEIEIEDKDVRVDTYRASGAGGQHINKTDSAVRLTHEPTGIVVACQTDRSQHKNRSNAWTMLRARLYELELQKREEAAQADAESKTDIGWGHQIRSYVLQPYQMVKDLRTQVETSDTQGVLDGDLDDFMGAALAQRVGKSD 585 +KS+T+LVKGENAYGWLKTEAGVHRLVRISPYDSSGRRHTSFASVW+YPLVDDTI IEI DKDVR DTYRASG+GGQHINKTDSAVRLTH PTGI VACQ++RSQHKNR+ AW MLRARLYE ELQKRE AAQA+A+SK+DIGWGHQIRSYVLQPYQMVKDLRTQVETSDTQGVLDGDLD FM AALA RVG D Sbjct: 163 IKSVTLLVKGENAYGWLKTEAGVHRLVRISPYDSSGRRHTSFASVWSYPLVDDTINIEILDKDVRTDTYRASGSGGQHINKTDSAVRLTHIPTGIAVACQSERSQHKNRAKAWDMLRARLYEQELQKREAAAQAEADSKSDIGWGHQIRSYVLQPYQMVKDLRTQVETSDTQGVLDGDLDPFMAAALAARVGVED 357
BLAST of mRNA_C-australica_Contig_10237.1.1 vs. uniprot
Match: A0A4S2HER6_9PROT (Peptide chain release factor 2 n=1 Tax=Marinicauda pacifica TaxID=1133559 RepID=A0A4S2HER6_9PROT) HSP 1 Score: 339 bits (869), Expect = 2.290e-114 Identity = 165/196 (84.18%), Postives = 179/196 (91.33%), Query Frame = 1 Query: 1 LKSITILVKGENAYGWLKTEAGVHRLVRISPYDSSGRRHTSFASVWTYPLVDDTIEIEIEDKDVRVDTYRASGAGGQHINKTDSAVRLTHEPTGIVVACQTDRSQHKNRSNAWTMLRARLYELELQKREEAAQADAESKTDIGWGHQIRSYVLQPYQMVKDLRTQVETSDTQGVLDGDLDDFMGAALAQRVGKSDE 588 LKS+T+ VKGENAYGWLK EAG+HRLVRISP+DSSGRRHTSFASVW YP +D+ IEIEI +KDVR DT+RASGAGGQHINKTDSA+RLTH P+GIVV CQ DRSQHKNR+ AW MLRARLYELELQKREEAAQA+A+SKT+IGWGHQIRSYVLQPYQMVKDLRT VETSDTQGVLDGDLDDFM AALA RVG DE Sbjct: 174 LKSVTLHVKGENAYGWLKNEAGIHRLVRISPFDSSGRRHTSFASVWVYPEIDENIEIEIAEKDVRTDTFRASGAGGQHINKTDSAIRLTHVPSGIVVQCQADRSQHKNRATAWNMLRARLYELELQKREEAAQAEADSKTEIGWGHQIRSYVLQPYQMVKDLRTNVETSDTQGVLDGDLDDFMAAALAARVGVEDE 369
BLAST of mRNA_C-australica_Contig_10237.1.1 vs. uniprot
Match: A0A0P7VLX5_9PROT (Peptide chain release factor 2 n=5 Tax=Maricaulaceae TaxID=2800061 RepID=A0A0P7VLX5_9PROT) HSP 1 Score: 336 bits (861), Expect = 6.650e-114 Identity = 163/192 (84.90%), Postives = 176/192 (91.67%), Query Frame = 1 Query: 1 LKSITILVKGENAYGWLKTEAGVHRLVRISPYDSSGRRHTSFASVWTYPLVDDTIEIEIEDKDVRVDTYRASGAGGQHINKTDSAVRLTHEPTGIVVACQTDRSQHKNRSNAWTMLRARLYELELQKREEAAQADAESKTDIGWGHQIRSYVLQPYQMVKDLRTQVETSDTQGVLDGDLDDFMGAALAQRVG 576 LKS T+L+KG+NAYGWLKTEAGVHRLVRISP+D SGRRHTSFASVW YPL+DDTI+IEI DKDVR DT+RASGAGGQH+NKTDSAVRLTHEPTGIVV CQ DRSQH+NR AW MLRARLYELELQ RE AAQA+A++KTDIGWGHQIRSYVLQPYQMVKDLRT VETSDTQGVLDGDLD FM A+LA RVG Sbjct: 120 LKSATLLIKGDNAYGWLKTEAGVHRLVRISPFDGSGRRHTSFASVWVYPLIDDTIDIEILDKDVRTDTFRASGAGGQHVNKTDSAVRLTHEPTGIVVQCQADRSQHRNRDMAWNMLRARLYELELQNREAAAQAEADAKTDIGWGHQIRSYVLQPYQMVKDLRTNVETSDTQGVLDGDLDAFMAASLAARVG 311
BLAST of mRNA_C-australica_Contig_10237.1.1 vs. uniprot
Match: A0A4V3RYB7_9PROT (Peptide chain release factor 2 n=1 Tax=Marinicauda algicola TaxID=2029849 RepID=A0A4V3RYB7_9PROT) HSP 1 Score: 336 bits (862), Expect = 2.730e-113 Identity = 163/196 (83.16%), Postives = 178/196 (90.82%), Query Frame = 1 Query: 1 LKSITILVKGENAYGWLKTEAGVHRLVRISPYDSSGRRHTSFASVWTYPLVDDTIEIEIEDKDVRVDTYRASGAGGQHINKTDSAVRLTHEPTGIVVACQTDRSQHKNRSNAWTMLRARLYELELQKREEAAQADAESKTDIGWGHQIRSYVLQPYQMVKDLRTQVETSDTQGVLDGDLDDFMGAALAQRVGKSDE 588 LKS T+ VKGENAYGWLKTEAG+HRLVRISP+DSSGRRHTSFASVW YP +D+ IEIEI +KDVR DT+RASGAGGQH+NKTDSA+RLTH PTGIVV CQ DRSQHKNR+ AW MLRARLYE+ELQKREEAAQA A++KTDIGWGHQIRSYVLQPYQMVKDLRT VETSDTQGVLDGDLD+FM AALA RVG +E Sbjct: 174 LKSATLHVKGENAYGWLKTEAGIHRLVRISPFDSSGRRHTSFASVWVYPEIDENIEIEINEKDVRTDTFRASGAGGQHVNKTDSAIRLTHIPTGIVVQCQADRSQHKNRATAWNMLRARLYEMELQKREEAAQAQADAKTDIGWGHQIRSYVLQPYQMVKDLRTNVETSDTQGVLDGDLDEFMAAALAARVGGEEE 369
BLAST of mRNA_C-australica_Contig_10237.1.1 vs. uniprot
Match: A0A2D8BQD6_9PROT (Peptide chain release factor 2 n=4 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2D8BQD6_9PROT) HSP 1 Score: 335 bits (860), Expect = 5.860e-113 Identity = 161/192 (83.85%), Postives = 178/192 (92.71%), Query Frame = 1 Query: 1 LKSITILVKGENAYGWLKTEAGVHRLVRISPYDSSGRRHTSFASVWTYPLVDDTIEIEIEDKDVRVDTYRASGAGGQHINKTDSAVRLTHEPTGIVVACQTDRSQHKNRSNAWTMLRARLYELELQKREEAAQADAESKTDIGWGHQIRSYVLQPYQMVKDLRTQVETSDTQGVLDGDLDDFMGAALAQRVG 576 +KS+T+L KGENAYGWLKTEAGVHRLVRISPYDS+ RRHTSFAS W YPLVDD IE+E+ + DVRVDT+RASGAGGQH+NKT+SAVRLTHEPTGIVVACQ DRSQHKNR+ AW MLRAR+YELEL+KREEAAQA+A+SKTDIGWGHQIRSYVLQPYQMVKDLRT VETSDTQGVLDGDLD FM A+LA R+G Sbjct: 174 IKSVTLLFKGENAYGWLKTEAGVHRLVRISPYDSAARRHTSFASAWPYPLVDDQIEVEVNESDVRVDTFRASGAGGQHVNKTESAVRLTHEPTGIVVACQADRSQHKNRATAWNMLRARIYELELRKREEAAQAEADSKTDIGWGHQIRSYVLQPYQMVKDLRTGVETSDTQGVLDGDLDAFMAASLAARLG 365
BLAST of mRNA_C-australica_Contig_10237.1.1 vs. uniprot
Match: A0A8J3CRR7_9PROT (Peptide chain release factor 2 n=2 Tax=Algimonas arctica TaxID=1479486 RepID=A0A8J3CRR7_9PROT) HSP 1 Score: 326 bits (836), Expect = 4.060e-110 Identity = 158/196 (80.61%), Postives = 175/196 (89.29%), Query Frame = 1 Query: 1 LKSITILVKGENAYGWLKTEAGVHRLVRISPYDSSGRRHTSFASVWTYPLVDDTIEIEIEDKDVRVDTYRASGAGGQHINKTDSAVRLTHEPTGIVVACQTDRSQHKNRSNAWTMLRARLYELELQKREEAAQADAESKTDIGWGHQIRSYVLQPYQMVKDLRTQVETSDTQGVLDGDLDDFMGAALAQRVGKSDE 588 +KS+T+ KG NA+GW+KTE+GVHRLVRISPYDSS RRHTSFASVW YP +DDTIEIEI + D RVDTYRASGAGGQHINKTDSAVR+THEPTGIVV CQ DRSQHKNRS AW MLRARLYE ELQ+REEAAQA+A+SK+DIGWGHQIRSYVLQPYQMVKDLRT VETSDT GVLDG LD+FM AAL+ RVG ++ Sbjct: 120 IKSVTLRFKGPNAFGWMKTESGVHRLVRISPYDSSARRHTSFASVWVYPQIDDTIEIEINESDCRVDTYRASGAGGQHINKTDSAVRITHEPTGIVVQCQNDRSQHKNRSQAWDMLRARLYEKELQEREEAAQAEADSKSDIGWGHQIRSYVLQPYQMVKDLRTGVETSDTSGVLDGKLDEFMAAALSARVGDQED 315 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10237.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_10237.1.1 >prot_C-australica_Contig_10237.1.1 ID=prot_C-australica_Contig_10237.1.1|Name=mRNA_C-australica_Contig_10237.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=198bp LKSITILVKGENAYGWLKTEAGVHRLVRISPYDSSGRRHTSFASVWTYPLback to top mRNA from alignment at C-australica_Contig_10237:2..595+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_10237.1.1 ID=mRNA_C-australica_Contig_10237.1.1|Name=mRNA_C-australica_Contig_10237.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=594bp|location=Sequence derived from alignment at C-australica_Contig_10237:2..595+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_10237:2..595+ >mRNA_C-australica_Contig_10237.1.1 ID=mRNA_C-australica_Contig_10237.1.1|Name=mRNA_C-australica_Contig_10237.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=594bp|location=Sequence derived from alignment at C-australica_Contig_10237:2..595+ (Chrysoparadoxa australica CS_1217)back to top |