mRNA_C-australica_Contig_1022.3.2 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_1022.3.2 vs. uniprot
Match: A0A835YZZ3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZZ3_9STRA) HSP 1 Score: 305 bits (781), Expect = 4.340e-100 Identity = 146/260 (56.15%), Postives = 190/260 (73.08%), Query Frame = 1 Query: 112 IPSASRKAVSMMGEAMDEEKQRKLREMLSKQFGQGGSNAPSADEWCNSTDQVKSGTVLVSDPGQFYTRGSSSLERFGLPEPIPRELPGDRQCDLLPVVLLVEHNDDGSMGIMVNRRTGMLMGDLGDEMSTFMIQPIWLGGTTGTQGLCYVHTYPQITGAMQLTQDGLYFGGEFESAVRVVSEGVGSSAQFRFMLNFNTWGPGELEKEIAAGQWHQAECGKMSILKPRDRRGPDVAKPMWLDLMTMLGKE-----DIIDQV 876 + S S V MGE MDEE QRKLR+ML+KQFG+G ADEW D + GTVL++DP F+ + +L+RFGLPEPIP+ + DRQ DLLP +LLV+H GS+G+M+NRRTGMLMGDLG++MS FMIQPI+LGGT G+Q L ++HTYP++ A Q+T+DGL+FGG+F+SAV V EG+GS FRF + + WGPGEL E+ AG+WH GKMS+L+ RDR+GPD AKPMW DL+TM G+E +++D V Sbjct: 56 LSSRSGSHVLRMGEYMDEEAQRKLRDMLNKQFGKGAGTVK-ADEWAKPADAIGVGTVLLADPRPFFKGDAKTLQRFGLPEPIPQVISPDRQADLLPCILLVQHGPRGSIGVMLNRRTGMLMGDLGEDMSAFMIQPIFLGGTLGSQSLSFIHTYPEVAQAEQVTEDGLFFGGDFKSAVHCVREGIGSGFNFRFFVQYTQWGPGELGAEVNAGRWHAVSAGKMSLLRVRDRKGPDTAKPMWTDLLTMAGEEQPELKNVVDSV 314
BLAST of mRNA_C-australica_Contig_1022.3.2 vs. uniprot
Match: D7FRT0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRT0_ECTSI) HSP 1 Score: 245 bits (625), Expect = 1.260e-76 Identity = 127/264 (48.11%), Postives = 175/264 (66.29%), Query Frame = 1 Query: 82 SMAPSHTQWRIPSASRKAVSMMG-EAMDEEKQRKLREMLSKQFGQGGSNAPSADEWCNSTDQVKSGTVLVSDPGQFYTRGSSS-LERFGLPEPIP--RELPGDRQCDLLPVVLLVEHNDDGSMGIMVNRRTGMLMGDLGDEMSTFMIQPIWLGGTTGTQGLCYVHTYPQITGAMQLTQD-GLYFGGEFESAVRVVSEGVGSSAQFRFMLNFNTWGPGELEKEIAAGQWHQAECGKMSILKPRDRRGPDVAKPMWLDLMTMLGKE 858 ++A T WR + K MG E DE + KL+ ML++QFG G ++ P DEWC TD +++GTVL++DP F TR L++FGL +P+P ++P DR DLLPVVLLV + ++G+M+NRRTG+LMGDLG++ ++FMIQP+WLGGT G G+ ++HTYP++ GA ++++ GLYF G ESA +VV++G GS FRF W GELE E+ G W KM++L+ RDR+GPDVAKPMW DL M G E Sbjct: 40 AVASRSTSWR----NNKIRPRMGTEFEDENAKEKLKAMLNRQFGIGDTSRP--DEWCKPTDVLQTGTVLLADPKAFTTRSHPKMLDKFGLAQPLPGSEQIPPDRAADLLPVVLLVGIDAGRTIGLMLNRRTGVLMGDLGNDFTSFMIQPLWLGGTQGENGITFIHTYPEVEGAQAISEEEGLYFSGNMESASKVVTDGPGSGFNFRFFAQITVWKAGELEAEVDRGLWRPVVASKMALLRVRDRKGPDVAKPMWADLSQMAGGE 297
BLAST of mRNA_C-australica_Contig_1022.3.2 vs. uniprot
Match: A0A4D9D9B7_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9B7_9STRA) HSP 1 Score: 161 bits (407), Expect = 9.610e-44 Identity = 87/226 (38.50%), Postives = 130/226 (57.52%), Query Frame = 1 Query: 208 GQGGSNAPSADEWCNSTDQVKSGTVLVSDPGQFYTRGSSSL-ERFGLPEPIPRELPG----------DRQCDLLPVVLLVEHNDDGSMGIMVNRRTGMLMGDLGDEMSTFMIQPIWLGGTTGTQGLCYVHTYPQITGAMQLTQDGLYFGGEFESAVRVVSEGVGSSAQFRFMLNFNTWGPGELEKEIAAGQWHQAECGKMSILKPRDRRGPDVAKPMWLDLMTMLG 852 G+GG +W + ++ G VLV++P F + L RF LP + L D ++LPVVLL+ G+ G+++NRRTG L+GDL + S F IQP+ LGGT + G+ VHTYP++ A Q+T DGL+FGG + +A +V E SS++F+F + W PGEL++EI W+ A+ K ILK R R GP +AKP+W +++ ++G Sbjct: 84 GEGG-------DWAVYSSALRGGVVLVANPAVFLAGPPAGLASRFLLPSDLSLGLFSSFGGESQQAIDNLANILPVVLLLGSGSGGTSGLVLNRRTGYLVGDLNVDSSGFKIQPVHLGGTGESDGIFMVHTYPELERATQVTNDGLFFGGNYTAAQELVREQGASSSRFKFFIQQTLWAPGELKREIEDKVWYPAQVSKDVILKNRGREGPKMAKPLWTEVLELMG 302
BLAST of mRNA_C-australica_Contig_1022.3.2 vs. uniprot
Match: A0A7S2REZ5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2REZ5_9STRA) HSP 1 Score: 159 bits (403), Expect = 1.810e-42 Identity = 94/234 (40.17%), Postives = 136/234 (58.12%), Query Frame = 1 Query: 208 GQGGSNAPSAD----EWCNST--DQVKSGTVLVSDPGQFYTRGSSS--LERFGLPEPIPR-ELPGDRQCDLLPVVLLVEHNDD--GSMG-----------IMVNRRTGMLMGDLGDEMSTFMIQPIWLGGTTGTQGLCYVHTYPQITGAMQLTQDGLYFGGEFESAVRVVSEGVGSSAQFRFMLNFNTWGPGELEKEIAAGQ-WHQAECGKMSILKPRDRRGPDVAKPMWLDLM 840 G GGS+ +++ EWC + ++ G VLV++P F + + S L++ L IPR EL DR +LLPVVL+ E + G +G +++ RRTG L+ DL ++S FMIQP+ +GGT G+Q LC VH Y Q+ GA LT+DGLY GG+FESA +V EG GS +F+F + WG G L+ EI + W A+ + +LK R+R G KP+W D++ Sbjct: 115 GTGGSSGDASEGQVAEWCKAVVPGDLRPGCVLVANPAVFCSEDAPSAVLDKVALARSIPRDELDADRCAELLPVVLITELEEPQRGRLGGQAPAYGRCRGLLLGRRTGYLLADLDRDVSGFMIQPLLVGGTEGSQDLCMVHPYAQVRGAKSLTEDGLYVGGDFESAQDLVKEGTGSQFRFKFFIQDTEWGNGALDSEILNTKAWLVAQPSRDLLLKSREREGNKRPKPLWTDIV 348
BLAST of mRNA_C-australica_Contig_1022.3.2 vs. uniprot
Match: A0A7S1UHR3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UHR3_9STRA) HSP 1 Score: 156 bits (394), Expect = 4.780e-42 Identity = 81/196 (41.33%), Postives = 113/196 (57.65%), Query Frame = 1 Query: 223 NAPSADEWCNSTDQVKSGTVLVSDPGQFYTRGSSSLERFGLPEPIPRELPGDRQCDLLPVVLLVEHNDDGSMGIMVNRRTGMLMGDLGDE--MSTFMIQPIWLGGTTGTQGLCYVHTYPQITGAMQLTQDGLYFGGEFESAVRVVSEGVGSSAQFRFMLNFNTWGPGELEKEIAAGQWHQAECGKMSILKPRDRRG 804 N P A EW G +L+++P F+ ++G+ P +LP DR +LLPVV+L H D S G ++NRRTGM+MGDL ++ + F +QPIW GG G L VHTYPQ+ GA +++ DGL+ GG FE+A V+EG+ S F+F L + WG G LE E+ G W A C ++K R+R G Sbjct: 113 NTPEATEWVQPCGGPVGGGLLIANPDAFF-EDPMFQGKYGVQGFAPGDLPPDRLAELLPVVMLYMHGDLQSAGFVLNRRTGMMMGDLAEQHGLRCFQVQPIWYGGPHGEGQLSMVHTYPQVEGARKIS-DGLWLGGSFEAAQDEVTEGIASGWNFKFFLQVDAWGAGSLEDEVRRGWWLPARCSPQVVMKIRERGG 306
BLAST of mRNA_C-australica_Contig_1022.3.2 vs. uniprot
Match: A0A7S1BTP6_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BTP6_9STRA) HSP 1 Score: 155 bits (393), Expect = 1.080e-40 Identity = 83/196 (42.35%), Postives = 117/196 (59.69%), Query Frame = 1 Query: 319 SSSLERFGLPEPIPRELPGDRQCDLLPVVLLVEHNDD---GSMGIMVNRRTGMLMGDLGDE--------MSTFMIQPIWLGGTTGTQGLCYVHTYPQITGAMQLTQDGLYFGGEFESAVRVVSEGVG----SSAQFRFMLNFNTWGPGELEKEIAAGQWHQAECGKMSILKPRDRRGPDVAKPMWLDLMTMLGKED 861 +S L +FGL P P EL DRQ DLLPV+L++ H+ GS ++VNRRTG L+GDL + +S FMIQP+W GGT+G G+ VH + G+ ++T+DG+YFGG+ S ++SEG SS F+F + W P +L+KE+ G W A GK + KPRDR G KP+W ++M +L E+ Sbjct: 202 TSLLSKFGLTLPPPSELGPDRQADLLPVLLILSHDPSIVGGSTAVLVNRRTGYLLGDLESDDGAGPLAGLSPFMIQPLWFGGTSGGSGMTVVHQCEGVEGSEKITEDGIYFGGDVGSVGTLLSEGDAGSGFSSFNFKFFVQNTRWLPLQLDKEVRNGTWIAASVGKNVLFKPRDRNGVKPNKPLWTEIMELLEGEN 397
BLAST of mRNA_C-australica_Contig_1022.3.2 vs. uniprot
Match: A0A7S3VC25_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VC25_9STRA) HSP 1 Score: 147 bits (372), Expect = 2.060e-37 Identity = 98/272 (36.03%), Postives = 136/272 (50.00%), Query Frame = 1 Query: 196 SKQFGQGGSNAPSADEWCNSTD------QVKSGTVLVSDPGQFYTR-------GSSSLERFGLPEPIPRELPGDRQCDLLPVVLLVE-HNDDGSMGIMVNRRTGMLMGDLGDE---------------MSTFMIQPIWLGGTTG--------TQGLCYVHTYPQITGAMQLTQDGLYFGGEFESAVRVVS----EGVGSSAQFRFMLNFNTWGPGELEKEIAAGQWHQAECGKMSILKPRDRRGPDVAKPMWLDLMTMLGKE--DIIDQVMK 882 SK G G + + EW N D + G VLV++P +F ++ L +FGL P P EL DR+ DLLPV+LL++ H G +++NRRTG L+GDL + + FMIQP+W GGT+ T GL +H P + GA LT+DGLY+GG+ A +S E + F+F + W P +LEKEI G W A K + K RDR G AKP+W ++M ++G E I DQ+ K Sbjct: 193 SKSGGAGEDSDVPSTEWANPVDISDVGKALGGGVVLVANPAKFCDDFAEKKPPSAALLSKFGLTLPPPPELGPDRRADLLPVLLLLDRHPLKGCHALLLNRRTGYLIGDLEQQQLDDEDGKNSSPPPNLGAFMIQPLWFGGTSSGGEQSGPTTNGLDMIHLCPAVDGAKMLTEDGLYYGGDPSQAQDAMSDPELERPMTGFDFKFFVQSTRWLPMQLEKEIRDGSWFAASVSKEVVFKSRDRLGAKRAKPLWTEVMELMGGEFQGIRDQLYK 464
BLAST of mRNA_C-australica_Contig_1022.3.2 vs. uniprot
Match: A0A7S2B470_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B470_9STRA) HSP 1 Score: 139 bits (350), Expect = 3.740e-37 Identity = 68/157 (43.31%), Postives = 100/157 (63.69%), Query Frame = 1 Query: 385 CDLLPVVLLVEHND-DGSMGIMVNRRTGMLMGDLGDEMSTFMIQPIWLGGTTGTQGLCYVHTYPQITGAMQLTQDGLYFGGEFESAVRVVSEGVGSSAQFRFMLNFNTWGPGELEKEIAAGQWHQAECGKMSILKPRDRRGPDVAKPMWLDLMTMLG 852 +L+PV+++ ++ +G MG+M+NRRTG LMGDL ++S FMIQP+ GGT L ++H YP+I G+ Q+ +DGLY+ G F+ A +V +G S +FRF + W GELEK++A W A+ K ILK R+R G KP+W D+M + G Sbjct: 1 ANLMPVIIVTSGSESEGYMGLMLNRRTGYLMGDLEQDVSGFMIQPLNFGGTQPPADLSFLHPYPEIGGSTQIGEDGLYYSGNFKDAQMLVEKGTCSQFKFRFFIQCVRWEKGELEKQMAKNTWCPAQVSKDVILKIREREGSRRPKPLWTDVMDLAG 157
BLAST of mRNA_C-australica_Contig_1022.3.2 vs. uniprot
Match: A0A7S2U757_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U757_9STRA) HSP 1 Score: 145 bits (367), Expect = 5.110e-37 Identity = 89/245 (36.33%), Postives = 129/245 (52.65%), Query Frame = 1 Query: 238 DEWCNSTDQVKSGTVLVSDPGQFYTRGSSSLERFGLPEPIPRELPGDRQCDLLPVVLLVEHND-DGSMGIMVNRRTGMLMGDLGDE---------------MSTFMIQPIWLGGTTG----------TQGLCYVHTYPQITGAMQLTQDGLYFGGEFESAVRVVSEG----VGSSAQFRFMLNFNTWGPGELEKEIAAGQWHQAECGKMSILKPRDRRGPDVAKPMWLDLMTMLGKE--DIIDQV 876 +++C+ D +G + S +F + L +FGL P P +L DR+ DLLPV++L+E GS +++NRRTG L+GDLG E FMIQP+W GGT+ +GL +H P + GA LT+DGLY+GG+ A +S+ V + F+F + W P +LEKEI G WH A K + K RDR G AKP+W ++M ++G + DI DQ+ Sbjct: 177 EKFCS--DFPSAGDGMASAANRFAQPSGALLAKFGLTVPPPADLGPDRRADLLPVLVLLERQPLRGSRAVLMNRRTGYLLGDLGQESPEEQDTNVPXXXXKFGAFMIQPLWFGGTSAGGGNGSSDDTAKGLDMIHKCPAVEGAQALTEDGLYWGGDPVQAQDAMSDTSLDTVYTGFDFKFFVQSTRWLPMQLEKEIRDGTWHVASVSKEVLFKSRDRLGTRRAKPLWTEIMELMGGKYSDIRDQL 419
BLAST of mRNA_C-australica_Contig_1022.3.2 vs. uniprot
Match: A0A1Z5J7Y0_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J7Y0_FISSO) HSP 1 Score: 139 bits (351), Expect = 3.790e-35 Identity = 87/227 (38.33%), Postives = 125/227 (55.07%), Query Frame = 1 Query: 241 EWCNSTDQVKSGTVLVSDPGQFYTR--------GSSSLERFGLPEPIPRELPGDRQCDLLPVVLLVEHNDD-GSMGIMVNRRTGMLMGDLG---DE------MSTFMIQPIWLGGTTG-TQGLCYVHTYPQITGAMQLTQDGLYFGG---EFESAVRVVS-EGVGSSAQFRFMLNFNTWGPGELEKEIAAGQWHQAECGKMSILKPRDRRGPDVAKPMWLDLMTMLG 852 +W + D V GT+L+++P F S + RFGL P P EL DR+ DLLPV+L+V+ + G+ I++NRRTG L+GDL DE ++ F IQP+W GG + GL VH P + GA QLT+DGL++GG E + A+ S E S F+F + + PG+ EKE+A+ + A I K RDR G AKP+W ++M ++G Sbjct: 117 DWARAADTVAPGTILLANPDYFCANFNGNRRVPSSDLMARFGLSLPPPLELGPDRRADLLPVLLVVDSSKTKGTRAILLNRRTGHLLGDLEQPLDEGGSSPLLAKFCIQPLWFGGVDSYSAGLEMVHLCPAVRGAKQLTEDGLFWGGDPTEAQDAMEDPSLERPMSGFDFKFFVQSTIFAPGQAEKEVASSTFFLANVSTDVIFKSRDRMGTKRAKPLWTEIMELMG 343 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1022.3.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_1022.3.2 >prot_C-australica_Contig_1022.3.2 ID=prot_C-australica_Contig_1022.3.2|Name=mRNA_C-australica_Contig_1022.3.2|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=291bp MNWACIFALLLPATHSFLVPIRWSMAPSHTQWRIPSASRKAVSMMGEAMDback to top mRNA from alignment at C-australica_Contig_1022:1415..2993- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_1022.3.2 ID=mRNA_C-australica_Contig_1022.3.2|Name=mRNA_C-australica_Contig_1022.3.2|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1579bp|location=Sequence derived from alignment at C-australica_Contig_1022:1415..2993- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_1022:1415..2993- >mRNA_C-australica_Contig_1022.3.2 ID=mRNA_C-australica_Contig_1022.3.2|Name=mRNA_C-australica_Contig_1022.3.2|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=873bp|location=Sequence derived from alignment at C-australica_Contig_1022:1415..2993- (Chrysoparadoxa australica CS_1217)back to top |