mRNA_C-australica_Contig_1021.9.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_1021.9.1 vs. uniprot
Match: A0A836C8V9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8V9_9STRA) HSP 1 Score: 124 bits (311), Expect = 1.120e-34 Identity = 58/103 (56.31%), Postives = 78/103 (75.73%), Query Frame = 1 Query: 1 RYLKGGRLYESYDPITSTEKFYEGIDNQALGYIPPTRDPPKIKDDILLLGGPDKGKTGRITFLWPTRPPQESIPGTKKAIVKLDSQVGGIREIKVVPYNNVAK 309 RYLK G LY++YDP+TSTEK+++G D+ L ++PP RDPPKI+D I+L+ GPDKG+TGR+ + G+KKAI+KL++ +GGIREIKVVPY VAK Sbjct: 7 RYLKAGDLYDAYDPVTSTEKYFKGTDDSTLVFVPPARDPPKIRDSIMLVAGPDKGRTGRMIGEEVAVSRVGAASGSKKAIIKLNTTLGGIREIKVVPYEMVAK 109
BLAST of mRNA_C-australica_Contig_1021.9.1 vs. uniprot
Match: A0A0G4GSY0_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GSY0_VITBC) HSP 1 Score: 120 bits (302), Expect = 7.860e-31 Identity = 60/108 (55.56%), Postives = 77/108 (71.30%), Query Frame = 1 Query: 1 RYLKGGRLYESYDPITSTEKFYEGIDNQALGYIPPTRDPPKIKDDILLLGGPDKGKTGRITFLWPTRPPQESIPGTKKAIVKLDSQVGGIREIKVVPYNNVAKLRDEK 324 RYLK G LYE YDPI STEKF+EG+++ L Y+PP RDPPKI+D +LLL GPDKGKTG + + E +K +VKLD++VG IRE+KVVPY +AK + E+ Sbjct: 209 RYLKAGDLYEVYDPIISTEKFFEGVEDSQLVYVPPLRDPPKIRDQVLLLRGPDKGKTGILLGVEG----DEVAKVKRKGVVKLDTKVGSIRELKVVPYAFIAKRKGEQ 312
BLAST of mRNA_C-australica_Contig_1021.9.1 vs. uniprot
Match: D7FKJ3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKJ3_ECTSI) HSP 1 Score: 107 bits (268), Expect = 7.720e-26 Identity = 56/109 (51.38%), Postives = 74/109 (67.89%), Query Frame = 1 Query: 1 RYLKGGRLYESYDPITSTEKFYEGIDNQALGYIPPTRDPPKIKDDILLLGGPDKGKTGRITFLWPTRPPQESIPGTKKAIVKLD-SQVGGIREIKVVPYNNVAKLRDEK 324 RYLK G LY+ YD +TSTE FY + N +L Y+PP++DPPKIKD++LL+ GPDKGKTG + + + KAIVKL+ S G+REIKVVP + VAK D++ Sbjct: 231 RYLKAGNLYDGYDSVTSTEGFYADVSNSSLKYVPPSKDPPKIKDNVLLVAGPDKGKTGFMIGV------EGGSLSATKAIVKLETSSALGMREIKVVPLDYVAKTVDQQ 333
BLAST of mRNA_C-australica_Contig_1021.9.1 vs. uniprot
Match: A0A7S3Y3I2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3I2_HETAK) HSP 1 Score: 107 bits (266), Expect = 7.800e-26 Identity = 61/111 (54.95%), Postives = 72/111 (64.86%), Query Frame = 1 Query: 1 RYLKGGRLYESYDPITSTEKFYEGIDNQALGYIPPTRDPPKIKDDILLLGGPDKGKTGRITFLWPTRPPQESIPGTKK--AIVKLDSQVGG---IREIKVVPYNNVAKLRD 318 RYLK G LY++YDP+TSTEKF+ + + AL + PP DPPKIKD +LL GPDKGKTG + L T G KK IVKLD+ +G IREIKVVPY VAK D Sbjct: 188 RYLKAGYLYDAYDPVTSTEKFFADVPDSALRFAPPAADPPKIKDLVLLTAGPDKGKTGTLIGLEETL----GSKGEKKKSGIVKLDNTIGRVSKIREIKVVPYAIVAKRLD 294
BLAST of mRNA_C-australica_Contig_1021.9.1 vs. uniprot
Match: A0A7S3Y3T3_HETAK (Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3T3_HETAK) HSP 1 Score: 107 bits (266), Expect = 1.030e-24 Identity = 61/111 (54.95%), Postives = 72/111 (64.86%), Query Frame = 1 Query: 1 RYLKGGRLYESYDPITSTEKFYEGIDNQALGYIPPTRDPPKIKDDILLLGGPDKGKTGRITFLWPTRPPQESIPGTKK--AIVKLDSQVGG---IREIKVVPYNNVAKLRD 318 RYLK G LY++YDP+TSTEKF+ + + AL + PP DPPKIKD +LL GPDKGKTG + L T G KK IVKLD+ +G IREIKVVPY VAK D Sbjct: 697 RYLKAGYLYDAYDPVTSTEKFFADVPDSALRFAPPAADPPKIKDLVLLTAGPDKGKTGTLIGLEETL----GSKGEKKKSGIVKLDNTIGRVSKIREIKVVPYAIVAKRLD 803
BLAST of mRNA_C-australica_Contig_1021.9.1 vs. uniprot
Match: A0A0G4FIK4_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FIK4_9ALVE) HSP 1 Score: 100 bits (250), Expect = 1.530e-23 Identity = 50/106 (47.17%), Postives = 69/106 (65.09%), Query Frame = 1 Query: 1 RYLKGGRLYESYDPITSTEKFYEGIDNQALGYIPPTRDPPKIKDDILLLGGPDKGKTGRITFLWPTRPPQESIPGT---KKAIVKLDSQVGGIREIKVVPYNNVAK 309 RYLK G LY +YDP+ STE F+ I N L Y PP ++PP D +LL+ GPDKGKTG + + P + IPG ++AIV+LD ++G IREI+ +P+ +AK Sbjct: 190 RYLKAGDLYGAYDPVVSTEMFFSQISNSQLRYQPPEKNPPFPTDPVLLIKGPDKGKTGMLLSVEPFVKGLDDIPGNEERRRAIVRLDDKIGTIREIRELPFTYIAK 295
BLAST of mRNA_C-australica_Contig_1021.9.1 vs. uniprot
Match: A0A7S3WXU4_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3WXU4_9SPIT) HSP 1 Score: 91.7 bits (226), Expect = 6.030e-20 Identity = 48/112 (42.86%), Postives = 64/112 (57.14%), Query Frame = 1 Query: 1 RYLKGGRLYESYDPITSTEKFYEGIDNQALGYIPPTRDPPKIKDDILLLGGPDKGKTGRITFLWPTRPPQESIPGTKKAIVKLD-------SQVGGIREIKVVPYNNVAKLR 315 RYLK G LY+ YDPITST FY+ ID+ L Y P T + P+I+D++L++ GPDKGK GR+ +L P + A VKLD + G E+K PY +A R Sbjct: 188 RYLKAGNLYQGYDPITSTTIFYDNIDDSQLVYTPITLEQPRIRDEVLIIQGPDKGKVGRVIWLGRNGPDNKEPDKVVSATVKLDPNPMLGGNNGKGFSEVKAYPYAWIAVTR 299
BLAST of mRNA_C-australica_Contig_1021.9.1 vs. uniprot
Match: A0A813EX22_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813EX22_POLGL) HSP 1 Score: 89.7 bits (221), Expect = 1.160e-18 Identity = 47/112 (41.96%), Postives = 65/112 (58.04%), Query Frame = 1 Query: 1 RYLKGGRLYESYDPITSTEKFYEGIDNQALGYIPPTRDPPKIKDDILLLGGPDKGKTGRITFLWPTRPPQESIPGTKKAIVKLDSQV-------GGIREIKVVPYNNVAKLR 315 RYLK G LY YDP+TST FYEGI++ L Y P + + P+I+D++L++ GPDKGK G++ +L P + A VKL GIRE+K PY+ +A R Sbjct: 305 RYLKAGNLYAGYDPVTSTTVFYEGIEDSRLVYTPLSLEQPRIRDEVLVIQGPDKGKVGQVIWLGKQGPDFDDPGKITTATVKLSPNPILSGGTGPGIREVKAYPYSWIAVTR 416
BLAST of mRNA_C-australica_Contig_1021.9.1 vs. uniprot
Match: A0A813L308_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813L308_POLGL) HSP 1 Score: 89.7 bits (221), Expect = 1.260e-18 Identity = 47/112 (41.96%), Postives = 65/112 (58.04%), Query Frame = 1 Query: 1 RYLKGGRLYESYDPITSTEKFYEGIDNQALGYIPPTRDPPKIKDDILLLGGPDKGKTGRITFLWPTRPPQESIPGTKKAIVKLDSQV-------GGIREIKVVPYNNVAKLR 315 RYLK G LY YDP+TST FYEGI++ L Y P + + P+I+D++L++ GPDKGK G++ +L P + A VKL GIRE+K PY+ +A R Sbjct: 1081 RYLKAGNLYAGYDPVTSTTVFYEGIEDSRLVYTPLSLEQPRIRDEVLVIQGPDKGKVGQVIWLGKQGPDFDDPGKITTATVKLSPNPILSGGTGPGIREVKAYPYSWIAVTR 1192
BLAST of mRNA_C-australica_Contig_1021.9.1 vs. uniprot
Match: A0A7R9UEJ4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UEJ4_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 1.270e-18 Identity = 37/60 (61.67%), Postives = 47/60 (78.33%), Query Frame = 1 Query: 1 RYLKGGRLYESYDPITSTEKFYEGIDNQALGYIPPTRDPPKIKDDILLLGGPDKGKTGRI 180 RYLK G LYE YDPI STEKFYEGI ++ L ++PP+ + PK +D +LL+ GPDKGKTG + Sbjct: 141 RYLKAGNLYEQYDPIVSTEKFYEGIPDKDLVFVPPSAETPKTRDPVLLIAGPDKGKTGLL 200 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1021.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_1021.9.1 >prot_C-australica_Contig_1021.9.1 ID=prot_C-australica_Contig_1021.9.1|Name=mRNA_C-australica_Contig_1021.9.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=109bp RYLKGGRLYESYDPITSTEKFYEGIDNQALGYIPPTRDPPKIKDDILLLGback to top mRNA from alignment at C-australica_Contig_1021:16287..16842- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_1021.9.1 ID=mRNA_C-australica_Contig_1021.9.1|Name=mRNA_C-australica_Contig_1021.9.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=556bp|location=Sequence derived from alignment at C-australica_Contig_1021:16287..16842- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_1021:16287..16842- >mRNA_C-australica_Contig_1021.9.1 ID=mRNA_C-australica_Contig_1021.9.1|Name=mRNA_C-australica_Contig_1021.9.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=327bp|location=Sequence derived from alignment at C-australica_Contig_1021:16287..16842- (Chrysoparadoxa australica CS_1217)back to top |