mRNA_C-australica_Contig_10206.1.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_10206.1.1 vs. uniprot
Match: A0A2D4SEP0_9GAMM (Acyl-CoA dehydrogenase n=1 Tax=Salinisphaeraceae bacterium TaxID=2026789 RepID=A0A2D4SEP0_9GAMM) HSP 1 Score: 251 bits (642), Expect = 4.110e-78 Identity = 120/163 (73.62%), Postives = 142/163 (87.12%), Query Frame = 1 Query: 1 QADARAFAQNVLSSVRLAMAGHERPEQRFFATKPFFDQVAEAGFIHALLPTEYGGAGYSNIDLAIAAEELMAVDVSVPSTMLAVGLGLQPLLLHGTHEQKQRFLPDIVADPANRLAALAFSDVGGAANFDCPDPGAGMQTFAHREGDEWVINGKKQYTPTAAG 489 Q +ARAFAQ VL VR +A H++P++RFFATKPFFD+VA+AGFI+AL+P YGGAGYSNIDLAIAAEELMAVDVSVP+TML VGLGLQPLL+HG+HEQKQRFLP + PA+RLA LAF+DVGGAANFD P+P AG+QTFAHR+GD+WVING+KQY +G Sbjct: 15 QTNARAFAQGVLGGVRDVIAAHDKPQKRFFATKPFFDEVADAGFINALIPEAYGGAGYSNIDLAIAAEELMAVDVSVPTTMLGVGLGLQPLLIHGSHEQKQRFLPAFIEKPADRLACLAFTDVGGAANFDDPNPDAGLQTFAHRDGDDWVINGRKQYNTNGSG 177
BLAST of mRNA_C-australica_Contig_10206.1.1 vs. uniprot
Match: A0A4S3KAQ6_9GAMM (Uncharacterized protein n=1 Tax=Panacagrimonas perspica TaxID=381431 RepID=A0A4S3KAQ6_9GAMM) HSP 1 Score: 205 bits (521), Expect = 4.580e-60 Identity = 97/163 (59.51%), Postives = 128/163 (78.53%), Query Frame = 1 Query: 1 QADARAFAQNVLSSVRLAMAGHERPEQRFFATKPFFDQVAEAGFIHALLPTEYGGAGYSNIDLAIAAEELMAVDVSVPSTMLAVGLGLQPLLLHGTHEQKQRFLPDIVADPANRLAALAFSDVGGAANFDCPDPGAGMQTFAHREGDEWVINGKKQYTPTAAG 489 QA ARAF + VL+ VR + RPEQRFFAT+PF+ Q+A+AGF+HAL P EYGG G S +D A+AAEEL AVD++VP+T+L GLG++P+L +GTHEQK++++ +I+ P RLA+ AF++VGG+ANFD PDP AG+QTFA EGDEWVINGKK +T +G Sbjct: 15 QAGARAFGKEVLTKVRGVIDPLPRPEQRFFATQPFYAQMAQAGFVHALFPKEYGGGGMSALDFALAAEELSAVDINVPTTLLGTGLGMEPILGYGTHEQKKKWIGEILEKPGERLASFAFTEVGGSANFDNPDPTAGVQTFARLEGDEWVINGKKHFTTNGSG 177
BLAST of mRNA_C-australica_Contig_10206.1.1 vs. uniprot
Match: A0A844H759_9RHOB (Acyl-CoA dehydrogenase n=1 Tax=Paracoccus limosus TaxID=913252 RepID=A0A844H759_9RHOB) HSP 1 Score: 205 bits (521), Expect = 4.700e-60 Identity = 96/163 (58.90%), Postives = 127/163 (77.91%), Query Frame = 1 Query: 1 QADARAFAQNVLSSVRLAMAGHERPEQRFFATKPFFDQVAEAGFIHALLPTEYGGAGYSNIDLAIAAEELMAVDVSVPSTMLAVGLGLQPLLLHGTHEQKQRFLPDIVADPANRLAALAFSDVGGAANFDCPDPGAGMQTFAHREGDEWVINGKKQYTPTAAG 489 Q ARAFA++VLS V + ++PE R ATKPF+ ++AEAGF+HAL PTEYGG G S +D A+AAEEL +VD++VP+T+LA GLG++P+L +GT QK++++ +I+ADPA RLA AF++VGG ANFDCPDP AG+QTFA REGDEWVING K + +G Sbjct: 15 QQGARAFARDVLSQVAETIRPLQKPEDRCLATKPFYAKMAEAGFVHALFPTEYGGTGMSTLDFALAAEELASVDINVPTTLLATGLGIEPILHYGTDAQKRKWIGEILADPAERLACFAFTEVGGGANFDCPDPAAGVQTFARREGDEWVINGAKHHITNGSG 177
BLAST of mRNA_C-australica_Contig_10206.1.1 vs. uniprot
Match: UPI0004A72CA8 (acyl-CoA dehydrogenase family protein n=1 Tax=Polycyclovorans algicola TaxID=616992 RepID=UPI0004A72CA8) HSP 1 Score: 204 bits (520), Expect = 6.460e-60 Identity = 99/163 (60.74%), Postives = 125/163 (76.69%), Query Frame = 1 Query: 1 QADARAFAQNVLSSVRLAMAGHERPEQRFFATKPFFDQVAEAGFIHALLPTEYGGAGYSNIDLAIAAEELMAVDVSVPSTMLAVGLGLQPLLLHGTHEQKQRFLPDIVADPANRLAALAFSDVGGAANFDCPDPGAGMQTFAHREGDEWVINGKKQYTPTAAG 489 Q AR FA++VLS V +A RPE RFFAT PF++++AEAGF+HAL P EYGG G + +D A+AAEEL A D++VPST+LA GLG++P+L GT EQK++++ +I+A PA RLAA AF++V G ANFDCPDPGAG+QT A REGDEWVI GKK YT G Sbjct: 15 QVGARGFARDVLSQVGKTIAPIARPEARFFATFPFYEKMAEAGFVHALFPREYGGTGMATLDFALAAEELAAGDINVPSTLLATGLGMEPILGFGTDEQKRKWIGEILARPAERLAAFAFTEVTGGANFDCPDPGAGVQTVAKREGDEWVITGKKHYTTNGCG 177
BLAST of mRNA_C-australica_Contig_10206.1.1 vs. uniprot
Match: UPI001BA8981F (acyl-CoA dehydrogenase family protein n=1 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=UPI001BA8981F) HSP 1 Score: 201 bits (510), Expect = 1.990e-58 Identity = 97/163 (59.51%), Postives = 123/163 (75.46%), Query Frame = 1 Query: 1 QADARAFAQNVLSSVRLAMAGHERPEQRFFATKPFFDQVAEAGFIHALLPTEYGGAGYSNIDLAIAAEELMAVDVSVPSTMLAVGLGLQPLLLHGTHEQKQRFLPDIVADPANRLAALAFSDVGGAANFDCPDPGAGMQTFAHREGDEWVINGKKQYTPTAAG 489 QA ARAFA L V ++ RPEQRF+AT+PF+ +A+AGFI A+LPTE+GG S +DLA+A EEL AVD++VP+ ++A GLGL+PL+ GT QK+RFLPD + D +RLAA AF++V G ANFDCPDP AG+QTFA REGDEWVING+K YT +G Sbjct: 15 QAGARAFAAGTLGKVASVISPLSRPEQRFYATRPFYQAMADAGFIKAILPTEFGGTALSVVDLALATEELAAVDINVPTALVATGLGLEPLMRFGTLTQKKRFLPDFIED-GSRLAAFAFTEVAGGANFDCPDPAAGVQTFARREGDEWVINGRKHYTTNGSG 176
BLAST of mRNA_C-australica_Contig_10206.1.1 vs. uniprot
Match: A0A4R7PDS3_9GAMM (Uncharacterized protein n=1 Tax=Panacagrimonas perspica TaxID=381431 RepID=A0A4R7PDS3_9GAMM) HSP 1 Score: 201 bits (510), Expect = 2.190e-58 Identity = 99/163 (60.74%), Postives = 122/163 (74.85%), Query Frame = 1 Query: 1 QADARAFAQNVLSSVRLAMAGHERPEQRFFATKPFFDQVAEAGFIHALLPTEYGGAGYSNIDLAIAAEELMAVDVSVPSTMLAVGLGLQPLLLHGTHEQKQRFLPDIVADPANRLAALAFSDVGGAANFDCPDPGAGMQTFAHREGDEWVINGKKQYTPTAAG 489 QA ARAFA+ L V A+A RPEQRFFATKPF+ ++A+AGF+HAL+P EYGG G S +D A+AAEE+ AVDV+V ST+L GLGL+P++ GT EQK+RFL +I+ P +RLAA AF++V G ANFD PDP AG+QT A EGD WVINGKK YT G Sbjct: 15 QAGARAFAKECLCGVNAAIAPLSRPEQRFFATKPFYVEMAKAGFVHALVPKEYGGTGMSALDFALAAEEMAAVDVNVASTLLGTGLGLEPIMNFGTEEQKRRFLGEILEKPGDRLAAFAFTEVTGGANFDNPDPNAGVQTIARLEGDHWVINGKKHYTTNGCG 177
BLAST of mRNA_C-australica_Contig_10206.1.1 vs. uniprot
Match: W7WDC2_9BURK (Acyl-CoA dehydrogenase n=5 Tax=Methylibium TaxID=316612 RepID=W7WDC2_9BURK) HSP 1 Score: 200 bits (508), Expect = 3.940e-58 Identity = 99/167 (59.28%), Postives = 122/167 (73.05%), Query Frame = 1 Query: 1 QADARAFAQNVLSSVRLAMAGHERPEQRFFATKPFFDQVAEAGFIHALLPTEYGGAGYSNIDLAIAAEELMAVDVSVPSTMLAVGLGLQPLLLHGTHEQKQRFLPDIVADPANRLAALAFSDVGGAANFDCPDPGAGMQTFAHREGDEWVINGKKQYTPTAAGGTAR 501 QADAR FA VLS V + RPE+RF+AT+P++D + AGF+ AL+P E+GG S +D A+AAEEL AVDV+VPS +L+ GLGLQPLL G EQK+RFLPD V D A RLA +AF++V G AN+DCPDP AG+QTFA REGDEWVI+G+K YT G R Sbjct: 15 QADARGFAARVLSEVAATIRPLARPEERFYATRPYYDAMVAAGFVKALIPKEFGGTALSTLDFALAAEELAAVDVNVPSALLSTGLGLQPLLRFGNAEQKRRFLPDFVEDGA-RLAGIAFTEVTGGANYDCPDPSAGVQTFARREGDEWVISGRKHYTTNGTGWDGR 180
BLAST of mRNA_C-australica_Contig_10206.1.1 vs. uniprot
Match: UPI0003B575FA (acyl-CoA/acyl-ACP dehydrogenase n=1 Tax=Nevskia ramosa TaxID=64002 RepID=UPI0003B575FA) HSP 1 Score: 197 bits (502), Expect = 3.080e-57 Identity = 92/163 (56.44%), Postives = 124/163 (76.07%), Query Frame = 1 Query: 1 QADARAFAQNVLSSVRLAMAGHERPEQRFFATKPFFDQVAEAGFIHALLPTEYGGAGYSNIDLAIAAEELMAVDVSVPSTMLAVGLGLQPLLLHGTHEQKQRFLPDIVADPANRLAALAFSDVGGAANFDCPDPGAGMQTFAHREGDEWVINGKKQYTPTAAG 489 QA AR FA VLS V+ +A H E RFFAT+PF+ Q+A+AGF+HAL P YGG+G S +D A+AAEEL D++VPST+L+ GLG++P++ +G+ EQK+R++ +I+ P +RLAALAF++V G +N+DCPDP AG+QTFA EGDEWVING+K YT G Sbjct: 15 QAGARQFAAGVLSQVKATIALHPAHEDRFFATRPFYAQMAQAGFVHALFPKAYGGSGMSIVDFALAAEELCVADINVPSTLLSTGLGMEPIIGYGSEEQKRRWIGEILEAPGDRLAALAFTEVTGGSNYDCPDPSAGVQTFARLEGDEWVINGQKHYTTNGCG 177
BLAST of mRNA_C-australica_Contig_10206.1.1 vs. uniprot
Match: A0A1C1WAR1_9PSED (Acyl-CoA dehydrogenase n=14 Tax=Pseudomonas TaxID=286 RepID=A0A1C1WAR1_9PSED) HSP 1 Score: 193 bits (491), Expect = 1.330e-55 Identity = 97/163 (59.51%), Postives = 118/163 (72.39%), Query Frame = 1 Query: 1 QADARAFAQNVLSSVRLAMAGHERPEQRFFATKPFFDQVAEAGFIHALLPTEYGGAGYSNIDLAIAAEELMAVDVSVPSTMLAVGLGLQPLLLHGTHEQKQRFLPDIVADPANRLAALAFSDVGGAANFDCPDPGAGMQTFAHREGDEWVINGKKQYTPTAAG 489 QA AR FA VLS V +A RPE RF+AT+PF+D + +AGFI ALLPT +GG+ + +D A+AAEEL A DV++PS +L GLGL +L HGT EQK+RFLPD V D +RLAALAF++V G AN+D PDP AG+QTFA EGDEWVING K YT G Sbjct: 15 QASARTFAAEVLSKVAPTIAPIARPEDRFYATRPFYDAMVDAGFIKALLPTSFGGSALTTLDFALAAEELAAADVNLPSALLGTGLGLHAVLHHGTEEQKRRFLPDFVED-GSRLAALAFTEVTGGANYDSPDPSAGVQTFARLEGDEWVINGAKHYTTNGTG 176
BLAST of mRNA_C-australica_Contig_10206.1.1 vs. uniprot
Match: UPI00036F1B2B (acyl-CoA dehydrogenase family protein n=1 Tax=Methylopila sp. 73B TaxID=1120792 RepID=UPI00036F1B2B) HSP 1 Score: 192 bits (487), Expect = 5.200e-55 Identity = 96/167 (57.49%), Postives = 119/167 (71.26%), Query Frame = 1 Query: 1 QADARAFAQNVLSSVRLAMAGHERPEQRFFATKPFFDQVAEAGFIHALLPTEYGGAGYSNIDLAIAAEELMAVDVSVPSTMLAVGLGLQPLLLHGTHEQKQRFLPDIVADPANRLAALAFSDVGGAANFDCPDPGAGMQTFAHREGDEWVINGKKQYTPTAAGGTAR 501 QA ARAF VL V +A P+QRF+A +P+++ + EAGF+ ALLP ++GG S +D A+AAEEL AVD++ PS +LA GLGLQPLL +G EQ+QRF+PD V D +RLAA AF++V G ANFDCPDP AG+QTFA REGDEWVI GKK YT G R Sbjct: 15 QAGARAFGAEVLRKVAPTIAPLPLPDQRFYAIRPYYEAMVEAGFVKALLPAKFGGTELSTLDFAVAAEELAAVDINTPSAILATGLGLQPLLRYGDAEQQQRFIPDFVED-GSRLAAFAFTEVTGGANFDCPDPTAGVQTFARREGDEWVITGKKHYTTNGTGWDGR 180 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10206.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_10206.1.1 >prot_C-australica_Contig_10206.1.1 ID=prot_C-australica_Contig_10206.1.1|Name=mRNA_C-australica_Contig_10206.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=238bp MAGHERPEQRFFATKPFFDQVAEAGFIHALLPTEYGGAGYSNIDLAIAAEback to top mRNA from alignment at C-australica_Contig_10206:5..831- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_10206.1.1 ID=mRNA_C-australica_Contig_10206.1.1|Name=mRNA_C-australica_Contig_10206.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=827bp|location=Sequence derived from alignment at C-australica_Contig_10206:5..831- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_10206:5..831- >mRNA_C-australica_Contig_10206.1.1 ID=mRNA_C-australica_Contig_10206.1.1|Name=mRNA_C-australica_Contig_10206.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=714bp|location=Sequence derived from alignment at C-australica_Contig_10206:5..831- (Chrysoparadoxa australica CS_1217)back to top |