mRNA_C-australica_Contig_1020.5.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-australica_Contig_1020.5.1 vs. uniprot
Match: A0A835Z5I2_9STRA (Proteasome endopeptidase complex n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5I2_9STRA) HSP 1 Score: 432 bits (1112), Expect = 4.130e-150 Identity = 207/238 (86.97%), Postives = 221/238 (92.86%), Query Frame = 2 Query: 203 LPFPHQPAAFCRQNLKCGYGTDNAQDLKFAKGTTTLAFKFQGGIIVSVDSRSTMGSYIASGTVKKVIEINPYLLGTMAGGAADCSFWERNLGTQCRLYELRNKERISVAAASKLLANTMQQYRGYGLSMGTMVAGWDKTGPQLYYVDDDATRLHGNLFSVGSGSTYAYGVLDTYYRYDMTDEEAIDLGQRAIYHATHRDAYSGGSNNLYLVKPTGWIKISSLDIMELHDKYDKEKA*G 916
LP + PA FCR N KCGYG DN Q +KFAKGTTTLAFKF+GGIIVSVDSRSTMG YIASGTVKKVIEINPYLLGTMAGGAADCSFWERNLGTQCR+YELRNKERISVAAASKLLANTM QYRGYGLSMGTMVAGWDKTGPQLYYVDDDATRLH ++FSVGSGSTYAYGVLDTYY++DMTDEEAIDLGQRAIYHATHRDAYSGG NN+YLVKPTGWIK++++D+MELHDKY EK G
Sbjct: 40 LPNVNNPAEFCRTNFKCGYGKDNEQAIKFAKGTTTLAFKFKGGIIVSVDSRSTMGPYIASGTVKKVIEINPYLLGTMAGGAADCSFWERNLGTQCRMYELRNKERISVAAASKLLANTMLQYRGYGLSMGTMVAGWDKTGPQLYYVDDDATRLHSHMFSVGSGSTYAYGVLDTYYKHDMTDEEAIDLGQRAIYHATHRDAYSGGINNVYLVKPTGWIKVAAVDVMELHDKYAAEKTEG 277
BLAST of mRNA_C-australica_Contig_1020.5.1 vs. uniprot
Match: D8LK43_ECTSI (Proteasome endopeptidase complex n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK43_ECTSI) HSP 1 Score: 418 bits (1074), Expect = 3.420e-144 Identity = 203/250 (81.20%), Postives = 222/250 (88.80%), Query Frame = 2 Query: 203 LPFPHQPAAFCRQNLKCGYGTDNAQDLKFAKGTTTLAFKFQGGIIVSVDSRSTMGSYIASGTVKKVIEINPYLLGTMAGGAADCSFWERNLGTQCRLYELRNKERISVAAASKLLANTMQQYRGYGLSMGTMVAGWDKTGPQLYYVDDDATRLHGNLFSVGSGSTYAYGVLDTYYRYDMTDEEAIDLGQRAIYHATHRDAYSGGSNNLYLVKPTGWIKISSLDIMELHDKYDKEKA*GTACRLARPGRDE 952
LP PAAFC NL CGYGTD+AQD+KFAKGTTTLAFKFQGGIIVSVDSRSTMG YIASGTVKKVIEINPYLLGTMAGGAADCSFWERNLG QCR+YELRNKERISVAAASKLL+NTM QYRGYGLSMGTMVAGWDKTGPQLYY DDD TRLHGNLFSVGSGSTYAYGVLDT+Y+YDMTDEEAI+LG+RAIYHATHRDAYSG NN+Y+VKPTGW+K+ + D+ ++H K +EKA A +R G +E
Sbjct: 37 LPNVANPAAFCSANLGCGYGTDHAQDIKFAKGTTTLAFKFQGGIIVSVDSRSTMGPYIASGTVKKVIEINPYLLGTMAGGAADCSFWERNLGIQCRMYELRNKERISVAAASKLLSNTMSQYRGYGLSMGTMVAGWDKTGPQLYYCDDDGTRLHGNLFSVGSGSTYAYGVLDTHYKYDMTDEEAIELGKRAIYHATHRDAYSGSINNVYIVKPTGWVKVHAGDVNDMHYKLAEEKA---AIAASRAGAEE 283
BLAST of mRNA_C-australica_Contig_1020.5.1 vs. uniprot
Match: A0A7S2R7G5_9STRA (Proteasome endopeptidase complex n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R7G5_9STRA) HSP 1 Score: 395 bits (1016), Expect = 5.380e-135 Identity = 196/242 (80.99%), Postives = 212/242 (87.60%), Query Frame = 2 Query: 203 LPFPHQPAAFCRQNLKCGYGTDNAQDLKFAKGTTTLAFKFQGGIIVSVDSRSTMGSYIASGTVKKVIEINPYLLGTMAGGAADCSFWERNLGTQCRLYELRNKERISVAAASKLLANTMQQYRGYGLSMGTMVAGWDKTGPQLYYVDDDATRLHGNLFSVGSGSTYAYGVLDTYYRYDMTDEEAIDLGQRAIYHATHRDAYSGGSNNLYLVKPTGWIKISSLDIMELHDKY--DKEKA*GTA 922
+P PAA+C+QN GYGTD Q ++FAKGTTTLAFKFQGGIIVSVDSRSTMG YIASGTVKKVIEINPYLLGTMAGGAADC+FWERNLG QCRLYELRNKERISVAAASKLLANTM QYRGYGLSMGTMV GWD+TGPQLYYVD+DATRLHGNLFSVGSGSTYAYGVLD+ YRYD+T EEAIDLG+RAIYHATHRDAYSGG+ NLY V+ GW+KI S D+ ELH Y +KE A G A
Sbjct: 63 IPAVPDPAAYCKQNFGVGYGTDTEQAVQFAKGTTTLAFKFQGGIIVSVDSRSTMGPYIASGTVKKVIEINPYLLGTMAGGAADCAFWERNLGMQCRLYELRNKERISVAAASKLLANTMFQYRGYGLSMGTMVTGWDRTGPQLYYVDNDATRLHGNLFSVGSGSTYAYGVLDSRYRYDLTVEEAIDLGKRAIYHATHRDAYSGGTCNLYHVQENGWVKIGSWDVNELHYLYADEKENAAGAA 304
BLAST of mRNA_C-australica_Contig_1020.5.1 vs. uniprot
Match: A0A6U1LQI5_9STRA (Proteasome endopeptidase complex n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1LQI5_9STRA) HSP 1 Score: 394 bits (1013), Expect = 6.620e-135 Identity = 188/225 (83.56%), Postives = 202/225 (89.78%), Query Frame = 2 Query: 221 PAAFCRQNLKCGYGTDNAQDLKFAKGTTTLAFKFQGGIIVSVDSRSTMGSYIASGTVKKVIEINPYLLGTMAGGAADCSFWERNLGTQCRLYELRNKERISVAAASKLLANTMQQYRGYGLSMGTMVAGWDKTGPQLYYVDDDATRLHGNLFSVGSGSTYAYGVLDTYYRYDMTDEEAIDLGQRAIYHATHRDAYSGGSNNLYLVKPTGWIKISSLDIMELHDKY 895
PAAFCR N CGYGTD+AQD+KFAKGTTTLAFKF+GG+IVSVDSRSTMG YIASGTVKKVIEINPYLLGTMAGGAADC+FWERNLGTQCR+YELRNKERISV AASKLLANTM YRGYGLSMGTM+AGWD TGP LYYVDDD TRL GNLFS GSGSTYAYGVLD++Y YDMT EEAIDLGQRAI HATHRDAYSG NNLY ++ TGW+KI S+D +LH KY
Sbjct: 46 PAAFCRSNFSCGYGTDHAQDIKFAKGTTTLAFKFKGGVIVSVDSRSTMGPYIASGTVKKVIEINPYLLGTMAGGAADCAFWERNLGTQCRMYELRNKERISVRAASKLLANTMYSYRGYGLSMGTMIAGWDHTGPGLYYVDDDGTRLEGNLFSCGSGSTYAYGVLDSFYDYDMTVEEAIDLGQRAIAHATHRDAYSGSINNLYHIQETGWVKIHSIDTNDLHYKY 270
BLAST of mRNA_C-australica_Contig_1020.5.1 vs. uniprot
Match: A0A7S1XMN8_9STRA (Proteasome endopeptidase complex n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XMN8_9STRA) HSP 1 Score: 385 bits (990), Expect = 1.670e-131 Identity = 187/236 (79.24%), Postives = 207/236 (87.71%), Query Frame = 2 Query: 203 LPFPHQPAAFCRQNLKCGYGTDNAQDLKFAKGTTTLAFKFQGGIIVSVDSRSTMGSYIASGTVKKVIEINPYLLGTMAGGAADCSFWERNLGTQCRLYELRNKERISVAAASKLLANTMQQYRGYGLSMGTMVAGWDKTGPQLYYVDDDATRLHGNLFSVGSGSTYAYGVLDTYYRYDMTDEEAIDLGQRAIYHATHRDAYSGGSNNLYLVKPTGWIKISSLDIMELHDKYDKEKA 910
LP PA+FCR N GYGTD QD+KFAKGTTTLAFKF+ G+IVSVDSRSTMGSYIASGTVKKVIEINPYLLGTMAGGAADCSFWERNLG QCRLYELRNKERISVAAASKLLANT +QYRGYGLSMGTM+ GWD+ GPQL+YVDDD TRL G+LFSVGSGSTYAYGVLD+ RYDMT EEAI+LG+RAIYHATHRDAYSGG NNLY +K TGW + ++D+ +LH KY ++KA
Sbjct: 37 LPHVEDPASFCRANFGVGYGTDAHQDVKFAKGTTTLAFKFKHGVIVSVDSRSTMGSYIASGTVKKVIEINPYLLGTMAGGAADCSFWERNLGMQCRLYELRNKERISVAAASKLLANTTRQYRGYGLSMGTMICGWDRKGPQLFYVDDDGTRLEGDLFSVGSGSTYAYGVLDSGLRYDMTPEEAIELGRRAIYHATHRDAYSGGLNNLYWMKETGWEFMGAVDVNDLHYKYAEDKA 272
BLAST of mRNA_C-australica_Contig_1020.5.1 vs. uniprot
Match: A0A6S9H536_HETAK (Proteasome endopeptidase complex n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9H536_HETAK) HSP 1 Score: 383 bits (983), Expect = 2.000e-130 Identity = 189/244 (77.46%), Postives = 205/244 (84.02%), Query Frame = 2 Query: 179 PLYCSLLPLPFPHQPAAFCRQNLKCGYGTDNAQDLKFAKGTTTLAFKFQGGIIVSVDSRSTMGSYIASGTVKKVIEINPYLLGTMAGGAADCSFWERNLGTQCRLYELRNKERISVAAASKLLANTMQQYRGYGLSMGTMVAGWDKTGPQLYYVDDDATRLHGNLFSVGSGSTYAYGVLDTYYRYDMTDEEAIDLGQRAIYHATHRDAYSGGSNNLYLVKPTGWIKISSLDIMELHDKYDKEKA 910
P+ LP PA FCR NLKCGY DN Q++KFAKGTTTLAFKF+ GIIVSVDSRSTMG YIASGTVKKVIEINPYLLGTMAGGAADCSFWERNLG QCRLYELRNKERISVAAASKLLANTM YRGYGLSMGTMV GWD TGPQLYYVDDD +RL NLFSVGSGSTYAYGVLD+ YR+DMT EEAI+LG++AIYHA HRDA SG NNLY VK TGW+KI S+D ++H +Y + KA
Sbjct: 30 PIGTECFMLPRVADPAKFCRDNLKCGYMIDNHQEIKFAKGTTTLAFKFKHGIIVSVDSRSTMGPYIASGTVKKVIEINPYLLGTMAGGAADCSFWERNLGMQCRLYELRNKERISVAAASKLLANTMNSYRGYGLSMGTMVTGWDHTGPQLYYVDDDGSRLANNLFSVGSGSTYAYGVLDSEYRWDMTVEEAIELGKKAIYHAAHRDAMSGSINNLYHVKETGWVKIHSIDTNDMHYEYAEAKA 273
BLAST of mRNA_C-australica_Contig_1020.5.1 vs. uniprot
Match: W7TGK8_9STRA (Proteasome subunit beta n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TGK8_9STRA) HSP 1 Score: 375 bits (964), Expect = 1.340e-127 Identity = 180/235 (76.60%), Postives = 203/235 (86.38%), Query Frame = 2 Query: 203 LPFPHQPAAFCRQNLKCGYGTDNAQDLKFAKGTTTLAFKFQGGIIVSVDSRSTMGSYIASGTVKKVIEINPYLLGTMAGGAADCSFWERNLGTQCRLYELRNKERISVAAASKLLANTMQQYRGYGLSMGTMVAGWDKTGPQLYYVDDDATRLHGNLFSVGSGSTYAYGVLDTYYRYDMTDEEAIDLGQRAIYHATHRDAYSGGSNNLYLVKPTGWIKISSLDIMELHDKYDKEK 907
LP PA+FC+ N GYGTD Q+LKFAKGTTTLAFKF GGI+V+VDSRST G+Y+ASGTVKKVIEINPYLLGTMAGGAADCSFWERNLG QCRLYELR+KERISVAAASKLLANT+ QYRGYGLSMGTM+ GWDKTGPQL+YVD+D RL GNLFSVGSGSTYAYGVLD +YR D++ +EAI+LG+RAIYHATHRDAYSGG N+Y V+ GW+K+ S D ELH KY +EK
Sbjct: 38 LPAVEDPASFCKTNFGVGYGTDQHQELKFAKGTTTLAFKFDGGIVVAVDSRSTQGAYVASGTVKKVIEINPYLLGTMAGGAADCSFWERNLGIQCRLYELRHKERISVAAASKLLANTVMQYRGYGLSMGTMITGWDKTGPQLFYVDNDGMRLKGNLFSVGSGSTYAYGVLDAHYRKDLSADEAIELGRRAIYHATHRDAYSGGIINVYHVQEQGWVKVFSGDCNELHYKYQEEK 272
BLAST of mRNA_C-australica_Contig_1020.5.1 vs. uniprot
Match: A0A7S2D216_9STRA (Proteasome subunit beta n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D216_9STRA) HSP 1 Score: 371 bits (953), Expect = 1.100e-125 Identity = 181/236 (76.69%), Postives = 203/236 (86.02%), Query Frame = 2 Query: 203 LPFPHQPAAFCRQNLKCGYGTDNAQDLKFAKGTTTLAFKFQGGIIVSVDSRSTMGSYIASGTVKKVIEINPYLLGTMAGGAADCSFWERNLGTQCRLYELRNKERISVAAASKLLANTMQQYRGYGLSMGTMVAGWDKTGPQLYYVDDDATRLHGNLFSVGSGSTYAYGVLDTYYRYDMTDEEAIDLGQRAIYHATHRDAYSGGSNNLYLVKPTGWIKISSLDIMELHDKYDKEKA 910
LP PAA+ +QN GYGTD Q ++FAKGTTTLAFKF GII++VDSRSTMG YIAS TVKKVIEINPYLLGTMAGGAADC++WERNLG QCRLYELRNKERISVAAASKLLANTM QYRGYGLSMGTMV GWDKTGPQLYY D+DATRLHG+LFSVGSGSTYAYGVLD+ +R D+T +EAIDLG+RAIYHATHRDAYSGG N+Y +K TGW+K+ + D+ +LH Y EKA
Sbjct: 43 LPAVADPAAYSKQNFGVGYGTDTEQAVQFAKGTTTLAFKFNEGIIIAVDSRSTMGPYIASQTVKKVIEINPYLLGTMAGGAADCAYWERNLGMQCRLYELRNKERISVAAASKLLANTMYQYRGYGLSMGTMVTGWDKTGPQLYYCDNDATRLHGDLFSVGSGSTYAYGVLDSNHRADLTVDEAIDLGKRAIYHATHRDAYSGGICNVYHMKETGWVKVGAWDVNDLHYLYADEKA 278
BLAST of mRNA_C-australica_Contig_1020.5.1 vs. uniprot
Match: K0RND0_THAOC (Proteasome endopeptidase complex n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RND0_THAOC) HSP 1 Score: 369 bits (946), Expect = 2.530e-125 Identity = 179/231 (77.49%), Postives = 199/231 (86.15%), Query Frame = 2 Query: 218 QPAAFCRQNLKCGYG-TDNAQDLKFAKGTTTLAFKFQGGIIVSVDSRSTMGSYIASGTVKKVIEINPYLLGTMAGGAADCSFWERNLGTQCRLYELRNKERISVAAASKLLANTMQQYRGYGLSMGTMVAGWDKTGPQLYYVDDDATRLHGNLFSVGSGSTYAYGVLDTYYRYDMTDEEAIDLGQRAIYHATHRDAYSGGSNNLYLVKPTGWIKISSLDIMELHDKYDKEK 907
QPA FCR N G +D Q++KFAKGTTTLAFKF GGIIVSVDSRSTMG+YIASGTVKKVIEINP+LLGTMAGGAADCSFWERNLG QCR+YELRNK+RISVAAASKLLANTM+ YRGYGLSMGTM+ GWD+TGPQLYYVDDD TRLHG FSVGSGSTYAYGVLDTYYR D+T EEAIDLG+RAIYHA HRDA SG NNLY V GW+KI ++D ++H ++ +EK
Sbjct: 11 QPAHFCRNNFASACGNSDQGQEVKFAKGTTTLAFKFNGGIIVSVDSRSTMGAYIASGTVKKVIEINPFLLGTMAGGAADCSFWERNLGIQCRMYELRNKKRISVAAASKLLANTMRSYRGYGLSMGTMITGWDETGPQLYYVDDDGTRLHGRYFSVGSGSTYAYGVLDTYYRPDLTVEEAIDLGKRAIYHACHRDAMSGSINNLYHVTKDGWVKIHAIDTNDMHYQFMEEK 241
BLAST of mRNA_C-australica_Contig_1020.5.1 vs. uniprot
Match: A0A6U4A757_9STRA (Proteasome subunit beta type-5 n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U4A757_9STRA) HSP 1 Score: 370 bits (950), Expect = 3.020e-125 Identity = 179/230 (77.83%), Postives = 201/230 (87.39%), Query Frame = 2 Query: 221 PAAFCRQNLKCGYGTDNA-QDLKFAKGTTTLAFKFQGGIIVSVDSRSTMGSYIASGTVKKVIEINPYLLGTMAGGAADCSFWERNLGTQCRLYELRNKERISVAAASKLLANTMQQYRGYGLSMGTMVAGWDKTGPQLYYVDDDATRLHGNLFSVGSGSTYAYGVLDTYYRYDMTDEEAIDLGQRAIYHATHRDAYSGGSNNLYLVKPTGWIKISSLDIMELHDKYDKEK 907
PAAFCR N G +A Q +KFAKGTTTLAFKF GGIIVSVDSRSTMG+YIASGTVKKVIEINP+LLGTMAGGAADCSFWERNLGTQCR+YELRNK+RISVAAASKLLANT YRGYGLSMGTM+ GWD+TGPQLYYVD+D TRL GN+F+VGSGSTYAYG+LDT+YR D+T EEAIDLG+RAIYHATHRDAYSGG NNLY V GW KI ++D+ E+H ++ +EK
Sbjct: 57 PAAFCRANFASASGNKDANQAIKFAKGTTTLAFKFNGGIIVSVDSRSTMGAYIASGTVKKVIEINPFLLGTMAGGAADCSFWERNLGTQCRMYELRNKKRISVAAASKLLANTTNAYRGYGLSMGTMITGWDETGPQLYYVDNDGTRLKGNMFAVGSGSTYAYGILDTFYRKDLTIEEAIDLGKRAIYHATHRDAYSGGINNLYHVTKEGWTKIHAIDVNEMHYEFAEEK 286 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1020.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_1020.5.1 >prot_C-australica_Contig_1020.5.1 ID=prot_C-australica_Contig_1020.5.1|Name=mRNA_C-australica_Contig_1020.5.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=184bp MGSYIASGTVKKVIEINPYLLGTMAGGAADCSFWERNLGTQCRLYELRNKback to top mRNA from alignment at C-australica_Contig_1020:10799..13002- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_1020.5.1 ID=mRNA_C-australica_Contig_1020.5.1|Name=mRNA_C-australica_Contig_1020.5.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2204bp|location=Sequence derived from alignment at C-australica_Contig_1020:10799..13002- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_1020:10799..13002- >mRNA_C-australica_Contig_1020.5.1 ID=mRNA_C-australica_Contig_1020.5.1|Name=mRNA_C-australica_Contig_1020.5.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=552bp|location=Sequence derived from alignment at C-australica_Contig_1020:10799..13002- (Chrysoparadoxa australica CS_1217)back to top |