mRNA_C-australica_Contig_102.10.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_102.10.1 vs. uniprot
Match: A0A835Z1N4_9STRA (Nucleotide-diphospho-sugar transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1N4_9STRA) HSP 1 Score: 132 bits (333), Expect = 4.380e-33 Identity = 83/214 (38.79%), Postives = 117/214 (54.67%), Query Frame = 2 Query: 11 LALAMLKDTLIKLGTSPSLQKAGVELNLMFAPTSARGKAQGILGSLGLEDRWQVVPMYGEGTGGGAEGSDLTAVLRIALEGA-SLATSGGVVFIGMDCPELSVVEVEAALRISEEGGAYICPAWDGGYTLLALPSSTPGEVFEGVQWSHPHTCFSQMQAISRTGLSLYVSEVHHDIDEIEDVVDLEARLSQAAEGDGTCSCPFTLHAARRVLLA 649 LA AML D L + G+S L+ + L++AP AR +A ++ G+E W + P+ G G + +DLTA+L+ ALEG T+G VVF+GMD P L E+ A R E A +CPA DGGYTLL +P + P ++F+GV WS P TC +Q+ + G+S+ + + D+D EDV + A CP TL AA L A Sbjct: 34 LARAMLLDLLRRFGSSAELRS--LRRVLVYAPPEARDEAAKLVREAGVEHEWVLTPVAG---GTKLKDADLTAILKDALEGTREEGTTGTVVFVGMDTPHLPSFEIIEACRKGAEDVALVCPANDGGYTLLGVPRNAPAKIFDGVLWSSPKTCETQVTRLRECGISVMIGATYEDLDTAEDVHSWHRTAT--ATSAAAHICPLTLEAAAAALRA 240
BLAST of mRNA_C-australica_Contig_102.10.1 vs. uniprot
Match: A0A6H5KTC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTC1_9PHAE) HSP 1 Score: 128 bits (321), Expect = 4.010e-31 Identity = 91/218 (41.74%), Postives = 114/218 (52.29%), Query Frame = 2 Query: 2 ANALALAMLKDTLIKLGTSPSLQKAGVELNLMF--APTSARGKAQGILGSLGLEDRWQVVPMYGEGTGGGAEGSDLTAVLRIALEGA-SLATSGGVVFIGMDCPELSVVEVEAALRISEEGG-AYICPAWDGGYTLLALPSSTPGEVFEGVQWSHPHTCFSQMQAISRTGLSLYVSEVHHDIDEIEDVVDLEARLSQAAEGDGTCSCPFTLHAARRVL 643 A LA+AML+D L + S++ E +F AP SA +L LGL+ W P+ +G S LT +L AL A S G V+F+GMD PEL EV AA +E+ G AYICPA DGGYTLL LP FEGV+WS TC SQ A++ G+S +HD+DE +DV LE R + EG CP TL AR L Sbjct: 45 AAQLAMAMLQDLLKRF----SIEDPAGEFRKVFVYAPPSAGPSVNKMLKDLGLDKAWDAEPVS---SGTPLRESGLTTILEAALASARSRERDGAVIFVGMDTPELPWSEVVAARSSAEKDGKAYICPASDGGYTLLGLPPKAGRGTFEGVKWSDSLTCKSQTLALASRGVSTRTGGTYHDVDEADDVAGLEKRSPRGLEGS---PCPQTLGIARTAL 252
BLAST of mRNA_C-australica_Contig_102.10.1 vs. uniprot
Match: A0A7S2CAW3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CAW3_9STRA) HSP 1 Score: 126 bits (317), Expect = 1.300e-29 Identity = 83/206 (40.29%), Postives = 111/206 (53.88%), Query Frame = 2 Query: 8 ALALAMLKDTLIKLGTSPSLQKAGVELNLMFAPTSARGKAQGILGSLGLEDR-WQVVPMYGEGTGGGAEGSDLTAVLRIALEGASLATS---------------GGVVFIGMDCPELSVVEVEAALRISEE-GGAYICPAWDGGYTLLALPSSTPGEVFEGVQWSHPHTCFSQMQAISRTGLSLYVSEVHHDIDEIEDVVDLEARL 574 A+A A++ D L +GT+P L KA ++ L+FAP S+R Q +L LGL+ W ++P+ G SDL L L+ A S G +FIGMD PE+S +++ AL + G AYICPA DGGYTLLALP P VF GV+WS TC SQM I+ G+ + V + DID+I D+ L RL Sbjct: 82 AIARALVSDALYSVGTAPEL-KAATKV-LLFAPESSRSDFQRLLQDLGLDAATWVLIPIQ---QGDDLRSSDLGGKLAFGLKDARAVPSASFGGDGKMVAGLSRGAALFIGMDAPEVSPLQIAQALATARSRGSAYICPATDGGYTLLALPPGAPDTVFSGVRWSADDTCLSQMSQIASKGIPVLVGPTYDDIDDIHDLRGLSQRL 282
BLAST of mRNA_C-australica_Contig_102.10.1 vs. uniprot
Match: R1D0W7_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D0W7_EMIHU) HSP 1 Score: 112 bits (280), Expect = 6.090e-25 Identity = 79/201 (39.30%), Postives = 107/201 (53.23%), Query Frame = 2 Query: 32 DTLIKLGTSPSLQKAGVELNLMFAPTS--ARGKAQGILGSLGLEDRWQVVPMYGEGTGGGAEGSDLTAVLRIALEGASLATS-GGVVFIGMDCPELSVVEVEAALRISEEGG-AYICPAWDGGYTLLALPSSTPGEV-FEGVQWSHPHTCFSQMQAISRTGLSLYVSEVHHDIDEIEDVVDLEARLSQAAEGDGTCSCPFT 619 D L + + + Q G E L +AP + AR +L +EDRW++ P+ + A S L +L A + A A V F+G+DCP+L + + AA S G A +CPA DGGYTLLALP + F V+WS TC SQ+QA++R GL+ V E H D+DE+ D+ L ARL A E D T CP T Sbjct: 82 DLLQRFAAATASQGGGFECFLTYAPPTEEARSWFASLLQEGRVEDRWRLQPVLSSSS---AASSSLGDILCDAGQRARAARGCARVSFLGVDCPDLPLEALLAAASASSAPGVAAVCPASDGGYTLLALPEGADERLCFSDVRWSAGDTCLSQLQALTRAGLTSAVLETHSDVDELPDLRALWARL--AGEPDSTSQCPHT 277
BLAST of mRNA_C-australica_Contig_102.10.1 vs. uniprot
Match: K0S136_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S136_THAOC) HSP 1 Score: 97.4 bits (241), Expect = 1.630e-19 Identity = 77/225 (34.22%), Postives = 109/225 (48.44%), Query Frame = 2 Query: 2 ANALALAMLKDTLIKLGTSPSLQKAGVELNLMFAP--TSARGKAQGILGSLGLED--------------RWQVVPMYGEGTGGGAEGSDLTA------VLRIALEGASLATSGGVVFIGMDCPELSVVEVEAALRISEEGG---AYICPAWDGGYTLLALPSSTPGEVFEGVQWSHPHTCFSQMQAISRTGLSLYVSEVHHDIDEIEDVVDLEARLSQAAEGDGT 601 A LA AML D L L LQ ++L L++AP ++ + IL SLGL W ++PM ++ SDLT+ ++ L V+F+GMD PE+ E+ L + AY+CPA DGGY LLALPS P VF G++WS T SQ++A+S +G+ + + + +DIDE EDV L RLS + T Sbjct: 32 AALLAQAMLSDVLSSLTACDHLQDT-LKL-LVYAPGDSNTGSRMTKILASLGLSSCSSESYTPRKDTTSNWVLMPML-------SDSSDLTSSSLGDKLMDSLTRARELDEGSPVLFLGMDSPEVPTDEIVRGLETASSKDMPRAYMCPANDGGYGLLALPSCAPTSVFSGIRWSCALTAVSQLKALSDSGIDVSIGRLMYDIDEPEDVSSLAKRLSSPFSEEAT 247
BLAST of mRNA_C-australica_Contig_102.10.1 vs. uniprot
Match: A0A7S4QW63_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QW63_9STRA) HSP 1 Score: 96.3 bits (238), Expect = 2.890e-19 Identity = 81/227 (35.68%), Postives = 117/227 (51.54%), Query Frame = 2 Query: 2 ANALALAMLKDTLIKLGTSPSLQKAGVELNLMFAPTSARGKAQ--GILGSLGLE------------------DRWQVVPMYGEGTGGGAEGSDLTAVL-----RIALEGASLATS----GGVVFIGMDCPELSVVEVEAALRISEEGGAYICPAWDGGYTLLALPSSTP-GEVFEGVQWSHPHTCFSQMQAISRTGLSLYVSEVHHDIDEIEDVVDLEARLSQAAEG 592 A +LA AML D L+ L +S V L++AP + G+A IL LGL RW ++PM + + + SDL L R+ + L++S G VVF+GMD PEL + E+ AL+IS + A++CPA DGGY +L +PS P +FE VQWS T SQ++A++ G+ + + ++ DIDE+EDV L RL G Sbjct: 32 AASLARAMLSDILVTLLSSFPENVLKV---LLYAPGNEEGEAHMVDILKDLGLPYTTXXXXXXXXXXXXDVYQRWILLPMVNDTS---LQSSDLGGKLSNGLNRVRTLQSKLSSSSNENGDVVFLGMDSPELPLHEISHALQISSQK-AHLCPANDGGYGMLCVPSHAPCPTIFEHVQWSTHLTAVSQLKALTDCGVEVSLGKLMFDIDEMEDVRGLAGRLCNVRNG 251
BLAST of mRNA_C-australica_Contig_102.10.1 vs. uniprot
Match: A0A7S4QUD2_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QUD2_9STRA) HSP 1 Score: 96.3 bits (238), Expect = 1.020e-18 Identity = 81/227 (35.68%), Postives = 117/227 (51.54%), Query Frame = 2 Query: 2 ANALALAMLKDTLIKLGTSPSLQKAGVELNLMFAPTSARGKAQ--GILGSLGLE------------------DRWQVVPMYGEGTGGGAEGSDLTAVL-----RIALEGASLATS----GGVVFIGMDCPELSVVEVEAALRISEEGGAYICPAWDGGYTLLALPSSTP-GEVFEGVQWSHPHTCFSQMQAISRTGLSLYVSEVHHDIDEIEDVVDLEARLSQAAEG 592 A +LA AML D L+ L +S V L++AP + G+A IL LGL RW ++PM + + + SDL L R+ + L++S G VVF+GMD PEL + E+ AL+IS + A++CPA DGGY +L +PS P +FE VQWS T SQ++A++ G+ + + ++ DIDE+EDV L RL G Sbjct: 32 AASLARAMLSDILVTLLSSFPENVLKV---LLYAPGNEEGEAHMVDILKDLGLPYTTXXXXXXXXXXXXDVYQRWILLPMVNDTS---LQSSDLGGKLSNGLNRVRTLQSKLSSSSNENGDVVFLGMDSPELPLHEISHALQISSQK-AHLCPANDGGYGMLCVPSHAPCPTIFEHVQWSTHLTAVSQLKALTDCGVEVSLGKLMFDIDEMEDVRGLAGRLCNVRNG 251
BLAST of mRNA_C-australica_Contig_102.10.1 vs. uniprot
Match: A0A7S4N157_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N157_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 2.800e-17 Identity = 43/84 (51.19%), Postives = 54/84 (64.29%), Query Frame = 2 Query: 353 GGAYICPAWDGGYTLLALPSSTPGEVFEGVQWSHPHTCFSQMQAISRTGLSLYVSEVHHDIDEIEDVVDLEARL--SQAAEGDG 598 G AY+CPA DGGY +L LPS P VF GV+WSHP T SQ++A+S G+ L + HD+DE DV+DL RL S+ G G Sbjct: 4 GRAYLCPADDGGYGMLCLPSDAPPSVFRGVRWSHPLTALSQLKALSDAGVGLTIGSEMHDVDEPSDVMDLAGRLCLSRRRRGKG 87
BLAST of mRNA_C-australica_Contig_102.10.1 vs. uniprot
Match: A0A7S0BZN1_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BZN1_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 6.210e-17 Identity = 46/127 (36.22%), Postives = 71/127 (55.91%), Query Frame = 2 Query: 281 VFIGMDCPELSVVEVEAALRISEEGGAY--------------------ICPAWDGGYTLLALPSSTPGEVFEGVQWSHPHTCFSQMQAISRTGLSLYVSE-VHHDIDEIEDVVDLEARLSQAAEGDG 598 VFIG DCP L + E+E ++ ++ +Y ICPA DGGY LL+LPS+ P EVF+ V+WS +TC SQ+ A+ + GL + V + + DIDE+ED+ + + ++ + G Sbjct: 51 VFIGSDCPHLPMNEIENSICAADSASSYSKDVIGGNDNSESVSRNRSMICPAVDGGYVLLSLPSTCPLEVFDNVEWSTENTCTSQIAALKKAGLEVIVGDKAYRDIDELEDIQSIASTIASNDDSKG 177
BLAST of mRNA_C-australica_Contig_102.10.1 vs. uniprot
Match: A0A8J6CB20_DIALT (Vesicle-fusing ATPase n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CB20_DIALT) HSP 1 Score: 88.6 bits (218), Expect = 1.940e-15 Identity = 69/209 (33.01%), Postives = 98/209 (46.89%), Query Frame = 2 Query: 14 ALAMLKDTLIKLGTS-PSLQKAGVELNLMFAPTSAR--GKAQGILGSLGL-EDRWQVVPMYGEGTGGGAEGSDLTAVLRIALEG--ASLATSGGVVFIGMDCPELSVVEVEAALRISEEGGAYICPAWDGGYTLLALPSSTPGEVFEGVQWSHPHTCFSQMQAISRTGLSLYVSEVHHDIDEIEDVVDLEARLSQAAEGDGTCSCPFTL 622 A AML D L + + P +Q+ L+F+P K +L G E W +VPM A S+LTAVL AL A A +FIG D P + V AA+ +G A++CPA DGGYTLL +P+ P +F GV+WS T SQ ++ G+ + + D+D+ DL +L+ CS + L Sbjct: 69 ARAMLLDVLARHARAGPRVQRV-----LLFSPPDGAHADKFARLLREAGCAEGDWTLVPMRSTD----ARSSNLTAVLMDALTRVRARFAPVSTTIFIGADAPTVGEDAVRAAIVAGLDGRAHLCPAEDGGYTLLGVPADAPASIFAGVRWSAATTAISQAARLAEAGVRVDIGATFVDVDDAASFEDLREKLAADDGQRALCSRVWAL 268 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_102.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_102.10.1 >prot_C-australica_Contig_102.10.1 ID=prot_C-australica_Contig_102.10.1|Name=mRNA_C-australica_Contig_102.10.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=259bp MLKDTLIKLGTSPSLQKAGVELNLMFAPTSARGKAQGILGSLGLEDRWQVback to top mRNA from alignment at C-australica_Contig_102:59012..61143- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_102.10.1 ID=mRNA_C-australica_Contig_102.10.1|Name=mRNA_C-australica_Contig_102.10.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2132bp|location=Sequence derived from alignment at C-australica_Contig_102:59012..61143- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_102:59012..61143- >mRNA_C-australica_Contig_102.10.1 ID=mRNA_C-australica_Contig_102.10.1|Name=mRNA_C-australica_Contig_102.10.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=777bp|location=Sequence derived from alignment at C-australica_Contig_102:59012..61143- (Chrysoparadoxa australica CS_1217)back to top |