mRNA_C-australica_Contig_10189.1.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-australica_Contig_10189.1.1 vs. uniprot
Match: A0A222E972_9RHOB (AI-2 transport protein TqsA n=3 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A222E972_9RHOB) HSP 1 Score: 457 bits (1175), Expect = 3.760e-160 Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 1 Query: 1 MALPVQDQMKYWAVAAAVFAVVLWFLGDVLLPFVLGGAIAYCLDPIADWLERVGLTRGAATAVITVAMLLVFVIMTLAVIPLLIQQAISLFEFAPQLFRDLQGFLAERFPTMMDEGSVVRSTLLDLGESIKQTGGQLIQAVLTSVGTLLNFVALFLITPVVAVYLLMDWDRMVARVDELVPLDHRAVIRHLAKEIDRVLAGFIRGMGSVCLILGTYYAVSLWLVGLQFGLVVGVIAGLLTFIPYVGA 741
MALPVQDQMKYWAVAAAVFAVVLWFLGDVLLPFVLGGAIAYCLDPIADWLERVGLTRGAATAVITVAMLLVFVIMTLAVIPLLIQQAISLFEFAPQLFRDLQGFLAERFPTMMDEGSVVRSTLLDLGESIKQTGGQLIQAVLTSVGTLLNFVALFLITPVVAVYLLMDWDRMVARVDELVPLDHRAVIRHLAKEIDRVLAGFIRGMGSVCLILGTYYAVSLWLVGLQFGLVVGVIAGLLTFIPYVGA
Sbjct: 1 MALPVQDQMKYWAVAAAVFAVVLWFLGDVLLPFVLGGAIAYCLDPIADWLERVGLTRGAATAVITVAMLLVFVIMTLAVIPLLIQQAISLFEFAPQLFRDLQGFLAERFPTMMDEGSVVRSTLLDLGESIKQTGGQLIQAVLTSVGTLLNFVALFLITPVVAVYLLMDWDRMVARVDELVPLDHRAVIRHLAKEIDRVLAGFIRGMGSVCLILGTYYAVSLWLVGLQFGLVVGVIAGLLTFIPYVGA 247
BLAST of mRNA_C-australica_Contig_10189.1.1 vs. uniprot
Match: UPI001C43E473 (AI-2E family transporter n=1 Tax=Roseobacteraceae TaxID=2854170 RepID=UPI001C43E473) HSP 1 Score: 397 bits (1020), Expect = 1.370e-136 Identity = 204/247 (82.59%), Postives = 231/247 (93.52%), Query Frame = 1 Query: 1 MALPVQDQMKYWAVAAAVFAVVLWFLGDVLLPFVLGGAIAYCLDPIADWLERVGLTRGAATAVITVAMLLVFVIMTLAVIPLLIQQAISLFEFAPQLFRDLQGFLAERFPTMMDEGSVVRSTLLDLGESIKQTGGQLIQAVLTSVGTLLNFVALFLITPVVAVYLLMDWDRMVARVDELVPLDHRAVIRHLAKEIDRVLAGFIRGMGSVCLILGTYYAVSLWLVGLQFGLVVGVIAGLLTFIPYVGA 741
MALPV+DQ+KYW +AAAVF+VVLWFLGDVLLPFVLGGAIAYCLDP+ADWLERVGL+RGAATA+ITV LL+F+IMTLAVIPLLIQQAI+LFEFAPQLFRDL+ FL ERFP +MDEGS+V STL+DLGE+IKQ GGQLIQA L SVG++LN V LFLITPVV+VYLL+DWDRMVAR+DELVPLDH+ V+RHLA E+DRVLAGFIRGMGSV +ILGTYYAV+LW+VGLQFG VVGVIAG+LTFIPYVGA
Sbjct: 1 MALPVRDQLKYWGIAAAVFSVVLWFLGDVLLPFVLGGAIAYCLDPVADWLERVGLSRGAATALITVGTLLLFIIMTLAVIPLLIQQAIALFEFAPQLFRDLRSFLTERFPNIMDEGSIVHSTLIDLGETIKQKGGQLIQAALASVGSILNLVTLFLITPVVSVYLLVDWDRMVARIDELVPLDHKPVVRHLASEVDRVLAGFIRGMGSVSIILGTYYAVALWVVGLQFGPVVGVIAGMLTFIPYVGA 247
BLAST of mRNA_C-australica_Contig_10189.1.1 vs. uniprot
Match: A0A6F8Q5C8_9RHOB (AI-2E family transporter n=4 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A6F8Q5C8_9RHOB) HSP 1 Score: 384 bits (986), Expect = 2.020e-131 Identity = 201/247 (81.38%), Postives = 225/247 (91.09%), Query Frame = 1 Query: 1 MALPVQDQMKYWAVAAAVFAVVLWFLGDVLLPFVLGGAIAYCLDPIADWLERVGLTRGAATAVITVAMLLVFVIMTLAVIPLLIQQAISLFEFAPQLFRDLQGFLAERFPTMMDEGSVVRSTLLDLGESIKQTGGQLIQAVLTSVGTLLNFVALFLITPVVAVYLLMDWDRMVARVDELVPLDHRAVIRHLAKEIDRVLAGFIRGMGSVCLILGTYYAVSLWLVGLQFGLVVGVIAGLLTFIPYVGA 741
MALPV+DQ+KYW +AAAVF+VVLWFLGDVLLPF+LGGAIAYCLDP+AD LER GL RGAATAVITVA L++FV+MTLAVIPLLIQQAI+LFEFAPQLFRDLQ FL ERFP +MDEGSVVR+TL+DLG++IKQ GGQLIQA L SVG+LLN V L LITPVVAVYLLMDWDRMV RVD+++PLDH+ V+R LA E+DRVLAGFIRGMGSVCLILG YYA++LW VGLQFG VVGVIAG LTFIPYVGA
Sbjct: 1 MALPVRDQLKYWGIAAAVFSVVLWFLGDVLLPFILGGAIAYCLDPVADALERAGLKRGAATAVITVAALILFVVMTLAVIPLLIQQAIALFEFAPQLFRDLQAFLTERFPNIMDEGSVVRTTLIDLGDTIKQRGGQLIQAALASVGSLLNLVMLLLITPVVAVYLLMDWDRMVERVDDMLPLDHKPVVRRLAAEVDRVLAGFIRGMGSVCLILGGYYALALWAVGLQFGPVVGVIAGALTFIPYVGA 247
BLAST of mRNA_C-australica_Contig_10189.1.1 vs. uniprot
Match: A0A238L3L2_9RHOB (Pheromone autoinducer 2 transporter n=1 Tax=Maliponia aquimaris TaxID=1673631 RepID=A0A238L3L2_9RHOB) HSP 1 Score: 362 bits (929), Expect = 9.830e-123 Identity = 186/247 (75.30%), Postives = 222/247 (89.88%), Query Frame = 1 Query: 1 MALPVQDQMKYWAVAAAVFAVVLWFLGDVLLPFVLGGAIAYCLDPIADWLERVGLTRGAATAVITVAMLLVFVIMTLAVIPLLIQQAISLFEFAPQLFRDLQGFLAERFPTMMDEGSVVRSTLLDLGESIKQTGGQLIQAVLTSVGTLLNFVALFLITPVVAVYLLMDWDRMVARVDELVPLDHRAVIRHLAKEIDRVLAGFIRGMGSVCLILGTYYAVSLWLVGLQFGLVVGVIAGLLTFIPYVGA 741
MALPV+DQ+KYW +AAAVF+VVLWFLGDVLLPF+LGGAIAYCLDPIADWLERVGL+R AATAVI V +++FV+MTLA+IPLL+QQA++LF APQLFRDL+ FL ERFP++++E SV R+TL+ LG++I+Q G +++ A L SVG++LN VALFLI PVVA+YLL+DWDRMVA+VD LVPLDH+ +IR LA EIDRVLAGFIRGMGSVCLILGTYYA+ LWLVGLQFG VVGVIAG+LTFIPYVGA
Sbjct: 1 MALPVRDQLKYWGIAAAVFSVVLWFLGDVLLPFILGGAIAYCLDPIADWLERVGLSRAAATAVIAVCGVVLFVVMTLAIIPLLVQQALALFNLAPQLFRDLEAFLLERFPSIVNEDSVTRTTLIQLGDTIRQKGVEVVNAALGSVGSILNVVALFLIVPVVAIYLLLDWDRMVAQVDTLVPLDHKPMIRRLATEIDRVLAGFIRGMGSVCLILGTYYALMLWLVGLQFGPVVGVIAGVLTFIPYVGA 247
BLAST of mRNA_C-australica_Contig_10189.1.1 vs. uniprot
Match: UPI001C37F5D2 (AI-2E family transporter n=1 Tax=Thalassococcus sp. CAU 1522 TaxID=2851652 RepID=UPI001C37F5D2) HSP 1 Score: 354 bits (909), Expect = 8.190e-120 Identity = 183/247 (74.09%), Postives = 217/247 (87.85%), Query Frame = 1 Query: 1 MALPVQDQMKYWAVAAAVFAVVLWFLGDVLLPFVLGGAIAYCLDPIADWLERVGLTRGAATAVITVAMLLVFVIMTLAVIPLLIQQAISLFEFAPQLFRDLQGFLAERFPTMMDEGSVVRSTLLDLGESIKQTGGQLIQAVLTSVGTLLNFVALFLITPVVAVYLLMDWDRMVARVDELVPLDHRAVIRHLAKEIDRVLAGFIRGMGSVCLILGTYYAVSLWLVGLQFGLVVGVIAGLLTFIPYVGA 741
MALPVQDQ+KYW +AAAVFAVVLWFLGDVLLPFVLGGAIAYCLDP+ADWLER GL+RG + +ITV ++VFVIM LAVIPLLIQQ+I L FAPQLFRDLQ FL+ERFP++M E S++R +L +GE+I++ GGQL+Q VL+SVG+LLN V LF+I PVVAVYLL+DWDR VA++DE++P DH VIR LA E+D VL+GFIRGMGSVCLILGTYYA++LW +GLQFGLVVGVIAG+LTFIPYVGA
Sbjct: 1 MALPVQDQLKYWGLAAAVFAVVLWFLGDVLLPFVLGGAIAYCLDPVADWLERRGLSRGLSVGLITVVTIIVFVIMALAVIPLLIQQSIQLVNFAPQLFRDLQAFLSERFPSLMVEDSIIRQSLGSIGETIRERGGQLLQTVLSSVGSLLNVVLLFVIVPVVAVYLLVDWDRTVAQIDEMLPRDHAPVIRRLAGEVDAVLSGFIRGMGSVCLILGTYYALALWGIGLQFGLVVGVIAGILTFIPYVGA 247
BLAST of mRNA_C-australica_Contig_10189.1.1 vs. uniprot
Match: X6KY47_9RHOB (Membrane protein n=1 Tax=Rhodobacteraceae bacterium PD-2 TaxID=1169855 RepID=X6KY47_9RHOB) HSP 1 Score: 341 bits (875), Expect = 1.230e-114 Identity = 173/247 (70.04%), Postives = 209/247 (84.62%), Query Frame = 1 Query: 1 MALPVQDQMKYWAVAAAVFAVVLWFLGDVLLPFVLGGAIAYCLDPIADWLERVGLTRGAATAVITVAMLLVFVIMTLAVIPLLIQQAISLFEFAPQLFRDLQGFLAERFPTMMDEGSVVRSTLLDLGESIKQTGGQLIQAVLTSVGTLLNFVALFLITPVVAVYLLMDWDRMVARVDELVPLDHRAVIRHLAKEIDRVLAGFIRGMGSVCLILGTYYAVSLWLVGLQFGLVVGVIAGLLTFIPYVGA 741
MALPV+ Q+KYW +AA +FAVVLW LG+VLLPF+LGGAIAYCLDP+ADWLERVGL+R AATAVITV +L F M LA+IP L+ Q +SLF APQLFRDLQ FL+E+FP+++ EGSVVR T+ +G +I+ GG+L+ L SV +LL+ V LF+I PVVAVYLL+DWDRMVA+VD ++PLDHR +RHLA+EIDRVLAG IRGMGSVC+ILG YYA +LWLVGLQFGLVVGV+AG+LTFIPYVGA
Sbjct: 1 MALPVRTQLKYWGIAALIFAVVLWSLGNVLLPFILGGAIAYCLDPVADWLERVGLSRAAATAVITVVTILXFXXMVLAIIPTLVNQTVSLFNTAPQLFRDLQTFLSEKFPSVLTEGSVVRETITSVGTAIRDKGGELVNTALASVASLLSIVTLFVIVPVVAVYLLLDWDRMVAKVDAMIPLDHRETVRHLAREIDRVLAGCIRGMGSVCMILGGYYAGALWLVGLQFGLVVGVVAGMLTFIPYVGA 247
BLAST of mRNA_C-australica_Contig_10189.1.1 vs. uniprot
Match: UPI001AE0330A (AI-2E family transporter n=1 Tax=Sagittula salina TaxID=2820268 RepID=UPI001AE0330A) HSP 1 Score: 337 bits (863), Expect = 8.970e-113 Identity = 170/247 (68.83%), Postives = 211/247 (85.43%), Query Frame = 1 Query: 1 MALPVQDQMKYWAVAAAVFAVVLWFLGDVLLPFVLGGAIAYCLDPIADWLERVGLTRGAATAVITVAMLLVFVIMTLAVIPLLIQQAISLFEFAPQLFRDLQGFLAERFPTMMDEGSVVRSTLLDLGESIKQTGGQLIQAVLTSVGTLLNFVALFLITPVVAVYLLMDWDRMVARVDELVPLDHRAVIRHLAKEIDRVLAGFIRGMGSVCLILGTYYAVSLWLVGLQFGLVVGVIAGLLTFIPYVGA 741
MALPV+ Q+KYW VA A+ AVVLW LG+VLLPFVLGGAIAYCLDP+AD LER G +RGA+ +ITV +L+FV++ LA++PLL+ Q + LFE APQLFRDLQGFL +FP++M EG+VV+ TL+ +G++IK GG +++ LTSVG++LN + LFLI PVVAVY+L+DWDRM+A++D LVPLDHR IRH+A++ID VLAGFIRGMGSV LILGTYYAV+LW VGLQFGLVVGV+AGLLTFIPYVGA
Sbjct: 1 MALPVRKQLKYWGVAFAILAVVLWLLGNVLLPFVLGGAIAYCLDPVADRLERAGFSRGASVGIITVVAVLLFVVLALAIVPLLVNQTLQLFETAPQLFRDLQGFLTTKFPSLMLEGNVVQDTLVSIGDAIKAKGGAVVETALTSVGSVLNVLMLFLIVPVVAVYMLVDWDRMIAQIDGLVPLDHRETIRHIARQIDAVLAGFIRGMGSVMLILGTYYAVALWAVGLQFGLVVGVVAGLLTFIPYVGA 247
BLAST of mRNA_C-australica_Contig_10189.1.1 vs. uniprot
Match: UPI0010A5C2F2 (AI-2E family transporter n=1 Tax=Primorskyibacter sp. XY-301 TaxID=2562685 RepID=UPI0010A5C2F2) HSP 1 Score: 332 bits (852), Expect = 3.670e-111 Identity = 172/247 (69.64%), Postives = 204/247 (82.59%), Query Frame = 1 Query: 1 MALPVQDQMKYWAVAAAVFAVVLWFLGDVLLPFVLGGAIAYCLDPIADWLERVGLTRGAATAVITVAMLLVFVIMTLAVIPLLIQQAISLFEFAPQLFRDLQGFLAERFPTMMDEGSVVRSTLLDLGESIKQTGGQLIQAVLTSVGTLLNFVALFLITPVVAVYLLMDWDRMVARVDELVPLDHRAVIRHLAKEIDRVLAGFIRGMGSVCLILGTYYAVSLWLVGLQFGLVVGVIAGLLTFIPYVGA 741
MALPV+DQ KYW +A AVFAVVLWFLGDVLLPFVLG AIAY LDP+AD LE +G TRGAAT +ITV L++FVI+ LAVIP LIQQAI+LFEFAP LFRDLQ FL E FP+++ E S +R L +GE+I+ G +L+ L+S +LLN V LF+I PVVAVY+L+DWD M+AR+DELVPLDHR +R LA E+DRVLAGF+RGMGSVC+ILG +YA +LWL+GLQFGLVVGV AGLLTFIPYVGA
Sbjct: 1 MALPVRDQFKYWGIATAVFAVVLWFLGDVLLPFVLGSAIAYFLDPVADRLENMGFTRGAATGIITVIALVLFVILALAVIPTLIQQAIALFEFAPALFRDLQTFLTENFPSLIVEDSPIRQALSTIGETIQSKGVELLNTALSSAASLLNLVVLFIIAPVVAVYMLLDWDNMIARIDELVPLDHRETVRSLASEVDRVLAGFVRGMGSVCMILGIFYAAALWLIGLQFGLVVGVFAGLLTFIPYVGA 247
BLAST of mRNA_C-australica_Contig_10189.1.1 vs. uniprot
Match: A3JZJ1_9RHOB (Uncharacterized protein n=2 Tax=Sagittula TaxID=58842 RepID=A3JZJ1_9RHOB) HSP 1 Score: 333 bits (854), Expect = 4.860e-111 Identity = 174/247 (70.45%), Postives = 205/247 (83.00%), Query Frame = 1 Query: 1 MALPVQDQMKYWAVAAAVFAVVLWFLGDVLLPFVLGGAIAYCLDPIADWLERVGLTRGAATAVITVAMLLVFVIMTLAVIPLLIQQAISLFEFAPQLFRDLQGFLAERFPTMMDEGSVVRSTLLDLGESIKQTGGQLIQAVLTSVGTLLNFVALFLITPVVAVYLLMDWDRMVARVDELVPLDHRAVIRHLAKEIDRVLAGFIRGMGSVCLILGTYYAVSLWLVGLQFGLVVGVIAGLLTFIPYVGA 741
MALPV+ Q+KYW +AAA+FAV LWFLG+VLLPFVLGGAIAYCLDP+AD LER GL+R A+ VITVA +L+FV++TLA+IPLLI QA +LFE APQLFRDLQ FL E+FP +M EG VV+ +L LGE+IK G + + L SVG+LLN + LFLI PVVAVY+L+DWD MVA++D LVPLDHR +R LA+ +D VLAGFIRGMGSV LILGTYYAV LW VGLQFGLVVGV+AG LTFIPYVGA
Sbjct: 1 MALPVRKQLKYWGIAAAIFAVTLWFLGNVLLPFVLGGAIAYCLDPVADRLERAGLSRNASVGVITVAGVLIFVVLTLAIIPLLIGQATALFETAPQLFRDLQAFLTEKFPNLMTEGGVVQQSLASLGETIKTKGAAVAETALASVGSLLNVLMLFLIVPVVAVYMLIDWDNMVAQIDTLVPLDHRETVRELARSVDSVLAGFIRGMGSVMLILGTYYAVLLWAVGLQFGLVVGVVAGFLTFIPYVGA 247
BLAST of mRNA_C-australica_Contig_10189.1.1 vs. uniprot
Match: A0A238JGN6_9RHOB (AI-2 transport protein TqsA n=1 Tax=Pelagimonas phthalicica TaxID=1037362 RepID=A0A238JGN6_9RHOB) HSP 1 Score: 329 bits (844), Expect = 6.000e-110 Identity = 165/247 (66.80%), Postives = 207/247 (83.81%), Query Frame = 1 Query: 1 MALPVQDQMKYWAVAAAVFAVVLWFLGDVLLPFVLGGAIAYCLDPIADWLERVGLTRGAATAVITVAMLLVFVIMTLAVIPLLIQQAISLFEFAPQLFRDLQGFLAERFPTMMDEGSVVRSTLLDLGESIKQTGGQLIQAVLTSVGTLLNFVALFLITPVVAVYLLMDWDRMVARVDELVPLDHRAVIRHLAKEIDRVLAGFIRGMGSVCLILGTYYAVSLWLVGLQFGLVVGVIAGLLTFIPYVGA 741
MALPV+DQ+KYW + AAVF++VLWFLGDVLLPFVLGGAIAY LDP+AD LER+G +RGAAT ITV +L FV++ LA+IP LI QA++L +FAPQLF DLQ FL ERFP ++DE SVVR TL+ +G++I+ GG++I + S T+L+ LFLI PVVAVYLL+DWDRM+AR+D LVP DH V+R LA EID+VL+GF+RGMGSVC++LG YYA++LW+VGLQFGL+VGV+AG+LTFIPYVGA
Sbjct: 1 MALPVRDQLKYWGLTAAVFSLVLWFLGDVLLPFVLGGAIAYFLDPVADRLERMGFSRGAATGTITVIGVLAFVVLALAIIPTLISQALALVQFAPQLFNDLQSFLTERFPNLLDENSVVRETLIKIGQTIQDQGGRVINTLFNSAKTVLDIAILFLIVPVVAVYLLLDWDRMIARIDALVPRDHSEVVRQLAGEIDKVLSGFVRGMGSVCMVLGVYYALALWMVGLQFGLIVGVVAGMLTFIPYVGA 247 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10189.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_10189.1.1 >prot_C-australica_Contig_10189.1.1 ID=prot_C-australica_Contig_10189.1.1|Name=mRNA_C-australica_Contig_10189.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=247bp MALPVQDQMKYWAVAAAVFAVVLWFLGDVLLPFVLGGAIAYCLDPIADWLback to top mRNA from alignment at C-australica_Contig_10189:3..743- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_10189.1.1 ID=mRNA_C-australica_Contig_10189.1.1|Name=mRNA_C-australica_Contig_10189.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=741bp|location=Sequence derived from alignment at C-australica_Contig_10189:3..743- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_10189:3..743- >mRNA_C-australica_Contig_10189.1.1 ID=mRNA_C-australica_Contig_10189.1.1|Name=mRNA_C-australica_Contig_10189.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=741bp|location=Sequence derived from alignment at C-australica_Contig_10189:3..743- (Chrysoparadoxa australica CS_1217)back to top |