mRNA_C-australica_Contig_1018.1.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_1018.1.1 vs. uniprot
Match: A0A835YSU4_9STRA (CCHC-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSU4_9STRA) HSP 1 Score: 142 bits (359), Expect = 9.400e-36 Identity = 88/261 (33.72%), Postives = 134/261 (51.34%), Query Frame = 1 Query: 406 RLLGTALPSKQDFVVELGASTGMCTEILQRKAGRVVAVETSELMLEEARALCPEVQFECFDCMIELPRLFDLGRGADGVWLDIGGDRQVNHLLELIPHLQEEIGPP----------LIVVKSKRLAPMLLRKGCVRENGLVEGVRTWW----DRNNEDENAPCASIATVQ------GRDLMHPLRYPQV-LAPDG-----------------------TGTEICRFHNYLSCLK-ECCRRNHTNCHVCLEEGHRAIECSAF 1053 R L ALP++ D V++G S G CT +L K G V+ V+ S ++ +ARA+ P++ FEC D +++ L + G V+LDIGGDR+++ L+ LIP LQ + P +IVVK RLA + V+E+G + ++WW D+ NE + +VQ R +MHPL+YP++ L P G +ICR+HNY+ C + + C +HT CH C GH+A+EC + Sbjct: 3 RKLARALPTRADRCVDVGCSYGKCTALLAAKGGSVLGVDNSRQVVAKARAMHPDIHFECIDAILDRQTLVEKAAGPQLVFLDIGGDRELDTLVLLIPLLQRLLKPEASGSGRAAHCVIVVKGYRLARAASK--TVQEDGRICNFKSWWGAICDKANERMTQAGKKLGSVQQGTGKPSRRVMHPLQYPRMFLRPQGGLAGLAGNSSTAAVAGNSSIAGGDWKQICRYHNYMYCKRGDRCPHDHTACHCCGRAGHKAVECEVY 261
BLAST of mRNA_C-australica_Contig_1018.1.1 vs. uniprot
Match: A0A261Y2W6_9FUNG (Uncharacterized protein n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261Y2W6_9FUNG) HSP 1 Score: 142 bits (359), Expect = 3.930e-35 Identity = 99/285 (34.74%), Postives = 146/285 (51.23%), Query Frame = 1 Query: 271 GKFKGRVRVRYLSDGSTYHSRPERLIKI-PSCQQKMVMVTEDTKTFRLLGTALPSKQDFVVELGASTGMCTEILQRKA-GRVVAVETSELMLEEARALCPEVQFECFDCMIELPRLFDLGRGADGVWLDIGGDRQVNHLLELIPHLQEEIGP-PLIVVKSKRLAPMLLRKGCVRENGLVEGVRTWWDRNNEDENAPCASIATVQGRDLM---------------------HPLRYPQVLAPDGTGTEICRFHNYL--SCLK-ECCRRNHTNCHVCLEEGHRAIEC 1044 G R VRY DGST R+ ++ P +Q V+VT DT +R L + D V+ELG+S G+CT IL + G+V+ ++ S L+++E +A P +QFEC D M R+ L +G V++DIGGDR + ++ ++ + E++ LIVVKS+ L L + CVR +G +E WW ++ + T+QG+ L+ P RYP + DG ICR HNY C K + C NH+ CH CL +GHRA+ C Sbjct: 60 GDVATRYLVRYAHDGSTCSVNEARIHRVYPRNEQPTVIVTFDTTHYRRLARSQVYPPDSVLELGSSYGLCTTILHEHSNGQVIGIDNSSLLVKECQAKYPHMQFECVDVMQHGERVDALLQGRTIVFVDIGGDRCLEDVVAVLSFIMEKMKEVQLIVVKSESLVRDLEERDCVRPDGWIEDA--WWPSIHQ-------VVKTLQGQALLGSDRPKAEPWYLTAKAAQFVRKPSRYPSRVTADGQW--ICRVHNYTRAGCPKIDACAYNHSVCHHCLVDGHRALHC 333
BLAST of mRNA_C-australica_Contig_1018.1.1 vs. uniprot
Match: A0A7S4CH02_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4CH02_9EUGL) HSP 1 Score: 129 bits (323), Expect = 1.510e-31 Identity = 64/165 (38.79%), Postives = 106/165 (64.24%), Query Frame = 1 Query: 274 KFKGRVRVRYLSDGSTYHSRPERLIKIPSCQQKMVMVTEDTKTFRLLGTALPSKQDFVVELGASTGMCTEILQRKAGRVVAVETSELMLEEARALCPEVQFECFDCMIELPRLFDLGRGADGVWLDIGGDRQVNHLLELIPHLQEEIGPPLIVVKSKRLAPMLLR 768 ++ GRV+V++ +DG TYH RP R++++ Q+ V++ DT +R + + DFVVE+G+S G+CT+++ ++ RV+ VE SE + A A P V+F+CFD + +L + G D ++LD+GGDR + LL L+ LQE++ P L+V+KSK+L + R Sbjct: 22 QYYGRVKVQF-ADGKTYHVRPTRIVRVCGDWQRTVLLCGDTNQYRDVARSQVRASDFVVEIGSSYGVCTDMIAKRGARVIGVEISEEAVASACAKFPSVEFQCFDAVTRTEQLEAVATGCDKLFLDVGGDRDLPALLHLLVFLQEQLRPQLVVLKSKKLLAHMQR 185
BLAST of mRNA_C-australica_Contig_1018.1.1 vs. uniprot
Match: A0A507EHK6_9FUNG (Uncharacterized protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507EHK6_9FUNG) HSP 1 Score: 121 bits (303), Expect = 1.580e-27 Identity = 80/273 (29.30%), Postives = 140/273 (51.28%), Query Frame = 1 Query: 172 VYPPPTPPILAENDLVYQRTQQERAV--VEEVVTEGKFKGRVRVRYLSDGSTYHSRPERLIKIPSCQQKMVMVTEDTKTFRLLGTALPSKQDFVVELGASTGMCTEILQRKAGRVVAVETSELMLEEARALCPEVQFECFDCMIELPRLFDLGRGADGVWLDIGGDRQVNHLLELIPHLQEEIGPPLIVVKSKRLAPMLLRKGCVRENGLVEGVRTWWDR-------NNEDENAPCASIATVQGRDLM-HPLRYPQVLAPDGTGTEICRFHNY 960 ++P PP L +D V+ + + E++ V T +GR V++L+DGST+ P R++ + + + ++M+ + T +R L + K D VVE+G+S G+CT IL + A V +E S ++EEAR P ++FE + + R +L +G V++DIGG+R + +++++ L E + P LI +KS+ + + +G++ + W++ N AP + +PLRYP + DG ICR HNY Sbjct: 9 IFPALKPPALKVSDPVFVKLRSEKSTGHASIVQTPETPEGRPVVQFLTDGSTHPVNPARILAVYT-EAPLIMICKSTTDYRTLARSQVYKNDAVVEIGSSYGVCTGILAQHANSVFGLEVSPKLVEEARKRYPALRFELLNVLENKERTIELMQGVRKVFVDIGGNRTIGDVVKIVTLLNEALKPDLICIKSEEMVDDAEKHLNGSSDGVIPDGQAWFEGLQTRHAINVSKSIAPEQWYLNARKAGFTRNPLRYPMRVTADGNA--ICRLHNY 278
BLAST of mRNA_C-australica_Contig_1018.1.1 vs. uniprot
Match: A0A2P6N5R5_9EUKA (DNA-directed RNA polymerase n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N5R5_9EUKA) HSP 1 Score: 114 bits (286), Expect = 8.280e-25 Identity = 71/231 (30.74%), Postives = 124/231 (53.68%), Query Frame = 1 Query: 286 RVRVRYLSDGSTYHSRPERLIKI----PSCQQKMVMVTEDTKTFRLLGTALPSKQDFVVELGASTGMCTEILQRKAGRVVAVETSELMLEEARALCPEVQFECFDCMIELPRLFDLGRGADGVWLDIGGDRQVNHLLELIPH-LQEEIGPPLIVVKSKRLAPMLLRKGCVRENGLVEGV--RTWWDR-----NNEDENAPCASIA-----TVQGRDLMHPLRYPQVLAPDG 927 RV VRY +GSTYH P R+I + + + ++ + ++T+ +R L + +K+D VV++G+S G+CT+IL + RV+ VE S+ ++E +RA P + F D + + L +G + V++DIGGDR + +++ I L+++I P +IVVK++ L + + +G+ WW++ E+E + I V+ HPLRYPQ + G Sbjct: 115 RVCVRYEHNGSTYHVNPTRIIPVRKLSSTAGETLIFLCDNTREYRRLARSQVNKEDDVVDIGSSYGVCTDILSQHCDRVIGVEISKPLIEHSRAAYPNIPFHHLDIVKNESQSIPLLKGKNKVFIDIGGDRDIQPVVQCIKFVLEKKIKPEMIVVKNRPLTRCAMEETKPLRVAGYDGLIPNAWWEKMSTEYGKEEEKSGDVVIEGWFKKAVEEGFKKHPLRYPQRMTEGG 345
BLAST of mRNA_C-australica_Contig_1018.1.1 vs. uniprot
Match: A0A812X3W9_SYMPI (CbiT protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812X3W9_SYMPI) HSP 1 Score: 99.4 bits (246), Expect = 6.070e-20 Identity = 82/238 (34.45%), Postives = 112/238 (47.06%), Query Frame = 1 Query: 373 MVMVTEDTKTFRLLGTALPSKQDFVVELGASTGMCTEILQRKAGRVVAVETSELMLEEARALCPEVQF------ECFDCMIELPRLFDLGRGADG----VWLDIGGDRQVNHLLELIPHLQEEIGPPL--IVVKSKRLAPMLLRKGCVRENGLVEGVR-TWWDRNNEDENAPCASIATVQGRDLMHPLRYPQVLAPDGTGTEICRFHNYLSCLK-ECCRRNHTNCHVCLEEGHRAIEC 1044 M V T +FR L P D ++E+G G CT IL +A V+A++TS+ ++ E Q E D + P L + D V+ DIGG+R++NH++EL+ L + + P L + VKS+ LA L R +EG R TWW E A R + L+ P PDGT EICRF NY C K E CR +H +CH C GH A +C Sbjct: 1 MAEVVASTDSFRKLAKCRPHDGDRILEIGCCFGQCTVILAERAAEVLALDTSKECVQLTSQRLHEDQLGDRARSERLDVLAH-PELLRILGSCDPPFTVVFADIGGNRELNHVVELLELLSQTM-PMLSYVAVKSEALAETLGR-------APLEGSRLTWWQ-----ELAQQVCRKKQAKRPMQRILQRPVRRTPDGT--EICRFANYAECSKGEDCRYDHAHCHCCGAVGHYARDC 222
BLAST of mRNA_C-australica_Contig_1018.1.1 vs. uniprot
Match: A0A6B2LGS1_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LGS1_9EUKA) HSP 1 Score: 92.4 bits (228), Expect = 5.680e-18 Identity = 68/225 (30.22%), Postives = 111/225 (49.33%), Query Frame = 1 Query: 448 VELGASTGMCTEILQRKAGRVVAVETSELMLEEARALCPEVQFECFDCMIELPRLFDLGRG-----ADGV------------WLDIGGDRQVNHLLELIPHLQEEIGPPLIVVKSKRLAPMLLRKGC--VRENGLVEGVRTWWDRNNEDENAPCASIATVQGRDL--MHPLRYPQVLAPDGTGTEICRFHNYLSCLK-ECCRRNHTNCHVCLEEGHRAIECSAFR 1056 +E+G+S GM T+IL K+ VV ++ SE ++++ + P V+FEC D + + L L + DGV ++DIGG+R++ + L+ + I P LIV+KS+ L R+ C + G W D +++ ++ L +HPL+ PDG ICR+HNY C K E C+ +H +C+ C + GH A +C F+ Sbjct: 1 MEIGSSFGMTTQILYEKSLSVVGIDISEELVQKTQERLPRVRFECLDAVKDTLGLMKLAKWDGVVREDGVLVEGEEVMCNCVFVDIGGNREIEMVALLLESVTTRIKPYLIVIKSEELFQHA-RQFCESIGSVGSFADSPEWRDS--------LSNMIQLKKNKLSRLHPLKQTPRSNPDGI--LICRYHNYQRCKKAELCQFDHIHCNECGKPGHTAKQCQPFK 214
BLAST of mRNA_C-australica_Contig_1018.1.1 vs. uniprot
Match: A0A812RQC7_SYMMI (CbiT protein n=5 Tax=Symbiodinium TaxID=2949 RepID=A0A812RQC7_SYMMI) HSP 1 Score: 87.4 bits (215), Expect = 1.790e-15 Identity = 72/241 (29.88%), Postives = 107/241 (44.40%), Query Frame = 1 Query: 373 MVMVTEDTKTFRLLGTALPSKQDFVVELGASTGMCTEILQRKAGRVVAVETSELMLEEARALCPEVQFECFDCMIELPR---------LFDLGRGADGVWLDIGGDRQVNHLLELIPHLQEEI-GPPLIVVKSKRLAPMLLRKGCVRENGLVEGVRTWWDRNNED---ENAPCASIATVQGRDLMHPLRYPQVLAPDGTGTEICRFHNYLSCLK-ECCRRNHTNCHVCLEEGHRAIECSAF 1053 +V V T +FR L D V+E+G G CT IL +A V+A++TS+ ++ E + L V++DIGG+R++NH++EL+ L + + VKS+ LA L+ L E WW + + +P + + L HP+R P+G EICRF NY C K + CR +HT+CH C EGH A +C F Sbjct: 23 VVEVVASTDSFRQLAKCRLHDGDRVLEIGCCFGQCTVILAERAAEVLALDTSKECVQLTSQRLREERLXXXXXXXXXXXXXXXXXXXILASCNPPFSVVFVDIGGNRELNHVVELLELLDRTMQNLSYVAVKSEALAEALVHAP------LNEMRLQWWKELTQQVCRKKSPKRPMQKI----LQHPVRR----TPEGK--EICRFANYAECSKGKDCRYDHTHCHCCGAEGHYARDCVQF 247
BLAST of mRNA_C-australica_Contig_1018.1.1 vs. uniprot
Match: A0A383VEK1_TETOB (CCHC-type domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VEK1_TETOB) HSP 1 Score: 85.9 bits (211), Expect = 1.760e-14 Identity = 62/198 (31.31%), Postives = 90/198 (45.45%), Query Frame = 1 Query: 277 FKGRVRVRYLSDGSTYHSRPERLIKIPSCQQKMVMVTEDTKTFRLLGTALPSKQDFVVELGASTGMCTEILQRKAGRVVAVETSELMLEEARALCPEVQFECFDCMIELPRLFDLGRGADG------------------------------------------VWLDIGGDRQVNHLLELIPHLQEEIGPPLIVVKSK 744 + GR V + + G H RPERL+ + Q K+++VT T+ +R L + S D V+ELG S GM T +L A VV + SE + EAR P V+FE D + + + D+ RG V+ DIGG+RQ+ LL L+P + + I P L+VVKS+ Sbjct: 22 YAGRYLVHF-NTGQIAHVRPERLLPVLQ-QPKLILVTAATEDYRRLARSQVSSSDVVLELGCSYGMATNMLAEHAAAVVGTDNSEEAVAEARKRYPHVRFEIADVLDQPAAVLDIARGCSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQQCNVVFADIGGNRQLEALLRLLPWVLKHIKPRLLVVKSE 217
BLAST of mRNA_C-australica_Contig_1018.1.1 vs. uniprot
Match: A0A7S1F8A5_NOCSC (Hypothetical protein (Fragment) n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1F8A5_NOCSC) HSP 1 Score: 80.9 bits (198), Expect = 2.740e-14 Identity = 54/143 (37.76%), Postives = 80/143 (55.94%), Query Frame = 1 Query: 376 VMVTEDTKTFRLLGTALPSKQDFVVELGASTGMCTEILQRKAGRVVAVETSELMLEEARALCPEVQFECFDCMIELPRLFDL--GRGADGVWLDIGGDRQVNHLLELI-------PHLQEEIGPPLIVVKSKRLAPMLLRKGC 777 ++V T FR L + +K+D VVE+G+S G+CT+IL + + VV + S LEE+R PE++FE D E R + R +LDIGGDR++ H+L+ I PHL+ L+VVKS++L + KGC Sbjct: 37 IVVVAHTLEFRHLARSQVTKRDNVVEIGSSLGLCTKILAQASDVVVGFDVSAAHLEESRRTFPELRFEFLDIFEEAERFRGMPESRHCSVCFLDIGGDRELQHVLDAIKILRHCLPHLR------LMVVKSEQLEAAV-PKGC 172 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1018.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_1018.1.1 >prot_C-australica_Contig_1018.1.1 ID=prot_C-australica_Contig_1018.1.1|Name=mRNA_C-australica_Contig_1018.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=318bp MSDGEQELGSSIPLDKFGYRWMVYPPPTPPILAENDLVYQRTQQERAVVEback to top mRNA from alignment at C-australica_Contig_1018:4501..6277- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_1018.1.1 ID=mRNA_C-australica_Contig_1018.1.1|Name=mRNA_C-australica_Contig_1018.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1777bp|location=Sequence derived from alignment at C-australica_Contig_1018:4501..6277- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_1018:4501..6277- >mRNA_C-australica_Contig_1018.1.1 ID=mRNA_C-australica_Contig_1018.1.1|Name=mRNA_C-australica_Contig_1018.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=954bp|location=Sequence derived from alignment at C-australica_Contig_1018:4501..6277- (Chrysoparadoxa australica CS_1217)back to top |