mRNA_C-australica_Contig_10170.1.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_10170.1.1 vs. uniprot
Match: A0A5P9I2N3_9RHOB (Hint_2 domain-containing protein n=2 Tax=Roseovarius TaxID=74030 RepID=A0A5P9I2N3_9RHOB) HSP 1 Score: 407 bits (1045), Expect = 3.940e-142 Identity = 196/198 (98.99%), Postives = 197/198 (99.49%), Query Frame = 1 Query: 241 MGYVDSITVNDRTDRRYMTGICGEANVRTPLGGRRVEMLKPGDMVLVRHNGMQPVRMIWTWTVTAAEMRKHPELAPIRLKPRAVGPMMPNRDLRIASGHRVLIPGYRIAGAEDQPGCLMRVDGVASASDAAYSDWSSEEVTYYNLVFDRHEVITAEGLPIETFRPSPKALNLLDIGAQQRLKDLFPELNRRRCAYPGL 834 MGYVDSITVNDRTDRRY+TGICGEANVRTPLGGRRVEML PGDMVLVRHNGMQPVRMIWTWTVTAAEMRKHPELAPIRLKPRAVGPMMPNRDLRIASGHRVLIPGYRIAGAEDQPGCLMRVDGVASASDAAYSDWSSEEVTYYNLVFDRHEVITAEGLPIETFRPSPKALNLLDIGAQQRLKDLFPELNRRRCAYPGL Sbjct: 1 MGYVDSITVNDRTDRRYLTGICGEANVRTPLGGRRVEMLNPGDMVLVRHNGMQPVRMIWTWTVTAAEMRKHPELAPIRLKPRAVGPMMPNRDLRIASGHRVLIPGYRIAGAEDQPGCLMRVDGVASASDAAYSDWSSEEVTYYNLVFDRHEVITAEGLPIETFRPSPKALNLLDIGAQQRLKDLFPELNRRRCAYPGL 198
BLAST of mRNA_C-australica_Contig_10170.1.1 vs. uniprot
Match: UPI00143686E8 (Hint domain-containing protein n=1 Tax=Roseovarius aestuariivivens TaxID=1888910 RepID=UPI00143686E8) HSP 1 Score: 306 bits (784), Expect = 1.870e-102 Identity = 142/198 (71.72%), Postives = 168/198 (84.85%), Query Frame = 1 Query: 241 MGYVDSITVNDRTDRRYMTGICGEANVRTPLGGRRVEMLKPGDMVLVRHNGMQPVRMIWTWTVTAAEMRKHPELAPIRLKPRAVGPMMPNRDLRIASGHRVLIPGYRIAGAEDQPGCLMRVDGVASASDAAYSDWSSEEVTYYNLVFDRHEVITAEGLPIETFRPSPKALNLLDIGAQQRLKDLFPELNRRRCAYPGL 834 M +V S+T + + DRR++TG+CGE VRTPLGGRRVEML PGDMV+ RHNG+QPVRMIWTWT T A+M + PELAPIRLKPRA+GPMMP RDLRIASGHR LIPGY+IAGAED CLM++D +A ASDAA+ D S+ +VTYYNLVFD+HEVITAEGLP+ETFRPSPKAL+L+D+ A++RL LFP L RRR AYP L Sbjct: 1 MSFVSSVTSSVKPDRRFLTGLCGETTVRTPLGGRRVEMLHPGDMVVTRHNGLQPVRMIWTWTATDADMSRFPELAPIRLKPRAIGPMMPARDLRIASGHRALIPGYKIAGAEDSQPCLMQIDAIAGASDAAFVDRSASDVTYYNLVFDQHEVITAEGLPVETFRPSPKALHLVDVAARERLMSLFPNLARRRYAYPAL 198
BLAST of mRNA_C-australica_Contig_10170.1.1 vs. uniprot
Match: A0A1M7HA72_9RHOB (Hint domain-containing protein n=2 Tax=Roseovarius TaxID=74030 RepID=A0A1M7HA72_9RHOB) HSP 1 Score: 290 bits (742), Expect = 5.000e-96 Identity = 137/196 (69.90%), Postives = 161/196 (82.14%), Query Frame = 1 Query: 241 MGYVDSITVNDRTDRRYMTGICGEANVRTPLGGRRVEMLKPGDMVLVRHNGMQPVRMIWTWTVTAAEMRKHPELAPIRLKPRAVGPMMPNRDLRIASGHRVLIPGYRIAGAEDQPGCLMRVDGVASASDAAYSDWSSEEVTYYNLVFDRHEVITAEGLPIETFRPSPKALNLLDIGAQQRLKDLFPELNRRRCAYP 828 M Y +I RTDRRY+TGICGEANVRTPLG RR+EML PGDM++ R NG+QP+RMIWT TVTAA+MR+ PELAPIRLKPRAVGPMMP+RDLRIASGHR LIPGYRI+G D CLMR+DGVA ASDAA++D ++ VT+YNLVFD HEV +AEGLP+E++RPSPKAL LDI ++ L + FP L RRRC YP Sbjct: 1 MSYAAAIPTPARTDRRYLTGICGEANVRTPLGPRRIEMLHPGDMIVTRDNGLQPIRMIWTRTVTAAQMRERPELAPIRLKPRAVGPMMPSRDLRIASGHRALIPGYRISGVADDQPCLMRIDGVAVASDAAFADMGADAVTFYNLVFDSHEVFSAEGLPVESYRPSPKALVQLDISTREALLEHFPNLARRRCPYP 196
BLAST of mRNA_C-australica_Contig_10170.1.1 vs. uniprot
Match: A0A1Y5SZW6_9RHOB (Hint_2 domain-containing protein n=1 Tax=Roseovarius litorisediminis TaxID=1312363 RepID=A0A1Y5SZW6_9RHOB) HSP 1 Score: 286 bits (733), Expect = 1.160e-94 Identity = 134/197 (68.02%), Postives = 163/197 (82.74%), Query Frame = 1 Query: 241 MGYVDSITVNDRTDRRYMTGICGEANVRTPLGGRRVEMLKPGDMVLVRHNGMQPVRMIWTWTVTAAEMRKHPELAPIRLKPRAVGPMMPNRDLRIASGHRVLIPGYRIAGAEDQPGCLMRVDGVASASDAAYSDWSSEEVTYYNLVFDRHEVITAEGLPIETFRPSPKALNLLDIGAQQRLKDLFPELNRRRCAYPG 831 MG+V V+ + DRRY+TGICG+AN+RTPLG RRVEML PGDMV+ R +G+QPVRMIWT TV+A++M+KHP+LAPIRLKPRA+GPMMP+RDLRIASGHR LIPGY IA D LMRVD VA ASDAAY D +++ V +YNLVFDRHEV AEG+PIE+FRPSPKA++LLD+ A++ + DLFP L R+RCAYP Sbjct: 1 MGFVSDTVVDGKLDRRYLTGICGDANLRTPLGPRRVEMLNPGDMVVTRDHGLQPVRMIWTRTVSASDMQKHPDLAPIRLKPRAIGPMMPSRDLRIASGHRALIPGYLIANVPDDTSYLMRVDAVALASDAAYMDRAADTVVFYNLVFDRHEVFCAEGVPIESFRPSPKAISLLDVDARETIVDLFPNLARKRCAYPS 197
BLAST of mRNA_C-australica_Contig_10170.1.1 vs. uniprot
Match: A0A1M6Y8R2_9RHOB (Hint domain-containing protein n=4 Tax=Roseovarius TaxID=74030 RepID=A0A1M6Y8R2_9RHOB) HSP 1 Score: 283 bits (725), Expect = 1.910e-93 Identity = 133/198 (67.17%), Postives = 161/198 (81.31%), Query Frame = 1 Query: 241 MGYVDSITVNDRTDRRYMTGICGEANVRTPLGGRRVEMLKPGDMVLVRHNGMQPVRMIWTWTVTAAEMRKHPELAPIRLKPRAVGPMMPNRDLRIASGHRVLIPGYRIAGAEDQPGCLMRVDGVASASDAAYSDWSSEEVTYYNLVFDRHEVITAEGLPIETFRPSPKALNLLDIGAQQRLKDLFPELNRRRCAYPGL 834 MG+ + ++ DRRY+TGICG+AN+RTPLG RRVEML PGDMV+ R +G+QPVRMIWT TV+AA+MR P+LAPIRLKPRA+GPMMP RDLRIASGHR LIPGY IAG D +MR+D VA SDAAY D +++EV +YNLVFDRHEV AEGLPIE+FRPSPKA++LLD+ A++ + DLFP L +RRCAYP L Sbjct: 1 MGFAKKTAMVEKVDRRYLTGICGDANIRTPLGPRRVEMLNPGDMVVTRDHGLQPVRMIWTRTVSAADMRAQPDLAPIRLKPRAIGPMMPTRDLRIASGHRGLIPGYLIAGVPDDKSYIMRIDAVALVSDAAYMDRAADEVIFYNLVFDRHEVFCAEGLPIESFRPSPKAISLLDVRAREAIVDLFPNLAQRRCAYPSL 198
BLAST of mRNA_C-australica_Contig_10170.1.1 vs. uniprot
Match: A0A1X7BMS5_9RHOB (Hint_2 domain-containing protein n=1 Tax=Roseovarius aestuarii TaxID=475083 RepID=A0A1X7BMS5_9RHOB) HSP 1 Score: 273 bits (699), Expect = 1.690e-89 Identity = 127/198 (64.14%), Postives = 153/198 (77.27%), Query Frame = 1 Query: 241 MGYVDSITVNDRTDRRYMTGICGEANVRTPLGGRRVEMLKPGDMVLVRHNGMQPVRMIWTWTVTAAEMRKHPELAPIRLKPRAVGPMMPNRDLRIASGHRVLIPGYRIAGAEDQPGCLMRVDGVASASDAAYSDWSSEEVTYYNLVFDRHEVITAEGLPIETFRPSPKALNLLDIGAQQRLKDLFPELNRRRCAYPGL 834 MG+V + RTD+RY+TG+CGEANVRTPLG R VE+L PGDMV+ R NG+QPVRMIW TV AAEMR+ P+LAPIRLKPRAVGPMMP RDLRIA GHR LIPGYRI+G D CLMRV +A SD A+ D E VTYYNL+FD EV AEGLP+E+FRPSPK++ +D+ A+ L ++FP ++ +RCAYPGL Sbjct: 1 MGFVAELPTATRTDKRYLTGLCGEANVRTPLGARHVEILHPGDMVVTRDNGLQPVRMIWRRTVNAAEMRERPDLAPIRLKPRAVGPMMPMRDLRIACGHRALIPGYRISGVADVQSCLMRVGALAEVSDDAFVDMGEETVTYYNLIFDNQEVFCAEGLPVESFRPSPKSIAEMDVAARDELMEIFPHISPKRCAYPGL 198
BLAST of mRNA_C-australica_Contig_10170.1.1 vs. uniprot
Match: A0A7Y2IZD2_9RHOB (Hint_2 domain-containing protein n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A7Y2IZD2_9RHOB) HSP 1 Score: 202 bits (515), Expect = 1.100e-61 Identity = 96/186 (51.61%), Postives = 126/186 (67.74%), Query Frame = 1 Query: 274 RTDRRYMTGICGEANVRTPLGGRRVEMLKPGDMVLVRHNGMQPVRMIWTWTVTAAEMRKHPELAPIRLKPRAVGPMMPNRDLRIASGHRVLIPGYRIAGAEDQPGCLMRVDGVASASDAAYSDWSSEEVTYYNLVFDRHEVITAEGLPIETFRPSPKALNLLDIGAQQRLKDLFPELNRRRCAYPG 831 RT + G+ G A +RTP GGRR E ++ GD+++ R G+QPVRM+W+ TVTAA++ P LAP+RLKPRA+GPMMP RDL +A HRVL+PGYR+A D CL+ VA ASDAAY D + E+TYYN+VFD H+V A GLP+E+F PS L LD ++ L LFPEL+ + +P Sbjct: 8 RTSVQPAIGLAGSATLRTPCGGRRAENIRKGDLIVTRDAGLQPVRMVWSRTVTAAQISADPSLAPVRLKPRAIGPMMPQRDLVLAGAHRVLVPGYRLAEMPDTTACLLAARDVAEASDAAYVDKAVTEITYYNIVFDAHQVFCANGLPVESFLPSKTVLGQLDRSVREDLIALFPELDGQDAEFPA 193
BLAST of mRNA_C-australica_Contig_10170.1.1 vs. uniprot
Match: A0A7X6FTW2_9RHOB (Hint domain-containing protein n=1 Tax=Rhodobacteraceae bacterium R_SAG10 TaxID=2719012 RepID=A0A7X6FTW2_9RHOB) HSP 1 Score: 201 bits (511), Expect = 5.010e-61 Identity = 97/198 (48.99%), Postives = 133/198 (67.17%), Query Frame = 1 Query: 241 MGYVDSITVNDRTDRRYMTGICGEANVRTPLGGRRVEMLKPGDMVLVRHNGMQPVRMIWTWTVTAAEMRKHPELAPIRLKPRAVGPMMPNRDLRIASGHRVLIPGYRIAGAEDQPGCLMRVDGVASASDAAYSDWSSEEVTYYNLVFDRHEVITAEGLPIETFRPSPKALNLLDIGAQQRLKDLFPELNRRRCAYPGL 834 M Y+ I +RT R+ GI ANVRTP G RRVE++ GD+++ R NG+QPVRM+W VT+A+M + +LAPI +KPRA+GPMMP R +R+A HR+L+PGYR+ E GCL++ +A SDA Y D+++E V Y+ LVFD H+V GLP+E+F PS + + LD G + L LFP+L R+R AYP L Sbjct: 1 MSYLKKIEDLNRTSTRFPGGIAEGANVRTPCGARRVELVCAGDLIVTRDNGLQPVRMVWQREVTSADMAANIDLAPICIKPRAIGPMMPQRQMRLAPEHRILVPGYRLLCEEKTVGCLLKARELAGTSDAVYVDFTAEIVRYFTLVFDAHQVFCCNGLPVESFYPSAETILDLDDGLRDDLLCLFPKLKRKRTAYPAL 198
BLAST of mRNA_C-australica_Contig_10170.1.1 vs. uniprot
Match: A0A7C9J3U2_9RHOB (Hint_2 domain-containing protein n=1 Tax=Kangsaoukella pontilimi TaxID=2691042 RepID=A0A7C9J3U2_9RHOB) HSP 1 Score: 198 bits (503), Expect = 8.090e-60 Identity = 96/197 (48.73%), Postives = 127/197 (64.47%), Query Frame = 1 Query: 241 MGYVDSITVNDRTDRRYMTGICGEANVRTPLGGRRVEMLKPGDMVLVRHNGMQPVRMIWTWTVTAAEMRKHPELAPIRLKPRAVGPMMPNRDLRIASGHRVLIPGYRIAGAEDQPGCLMRVDGVASASDAAYSDWSSEEVTYYNLVFDRHEVITAEGLPIETFRPSPKALNLLDIGAQQRLKDLFPELNRRRCAYPG 831 M V + D + +TGIC AN+RTP GGRRVE L+ GD+V+ R NG+QPVRMIWT TVTA E+ P LAPI L+PRAVGPMMP R L + S HR+LIPG+R+ ED CL+ +A +D+ + D + +EVTYYN+VFD H+V A GLP+E+F P+P +L ++ K +FPE + YP Sbjct: 1 MTMVADFSKEDALAKTGVTGICAGANLRTPCGGRRVEFLRQGDLVVTRDNGLQPVRMIWTRTVTANEIAADPSLAPIVLRPRAVGPMMPQRTLSVGSAHRLLIPGWRLLDEEDSESCLVPARDIAGLNDSTFIDRAPDEVTYYNVVFDEHQVFAANGLPVESFLPTPDSLKETPKQVREDFKKVFPERAPKFADYPA 197
BLAST of mRNA_C-australica_Contig_10170.1.1 vs. uniprot
Match: A0A2M8IUD4_9RHOB (Hint_2 domain-containing protein n=1 Tax=Pseudooceanicola lipolyticus TaxID=2029104 RepID=A0A2M8IUD4_9RHOB) HSP 1 Score: 192 bits (488), Expect = 1.430e-57 Identity = 94/197 (47.72%), Postives = 130/197 (65.99%), Query Frame = 1 Query: 241 MGYVDSITVNDRTDRRYMTGICGEANVRTPLGGRRVEMLKPGDMVLVRHNGMQPVRMIWTWTVTAAEMRKHPELAPIRLKPRAVGPMMPNRDLRIASGHRVLIPGYRIAGAEDQPGCLMRVDGVASASDAAYSDWSSEEVTYYNLVFDRHEVITAEGLPIETFRPSPKALNLLDIGAQQRLKDLFPELNRRRCAYPG 831 M + I + + R+ GIC AN+RTP G RR+E+++PGD+++ R +G+QPV+M+W VT +MR P+LAPIRLKPRAVGPMMP RDL +A HR+LIPG+R+AG D L +A +SDA Y+D + E VT+Y LVFDRH+V+ A GLP+E+F P A+ L + L++ +PEL AYP Sbjct: 1 MSFQGKIELPEMVPTRFTGGICEGANLRTPCGMRRIEIVRPGDLIVTR-SGLQPVQMVWKRRVTREQMRLCPDLAPIRLKPRAVGPMMPQRDLLVAPDHRLLIPGFRLAGMPDTTCVLTEARKIAGSSDAIYADSAMESVTFYQLVFDRHQVLAANGLPVESFLPDAAAIAALGGEMRDALEERYPELREAPDAYPA 196 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10170.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_10170.1.1 >prot_C-australica_Contig_10170.1.1 ID=prot_C-australica_Contig_10170.1.1|Name=mRNA_C-australica_Contig_10170.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=270bp MRGGVSVMATVGTGSVSESRGGVCASSGPWRRRPQATPRKLSIRHDITSIback to top mRNA from alignment at C-australica_Contig_10170:2..835- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_10170.1.1 ID=mRNA_C-australica_Contig_10170.1.1|Name=mRNA_C-australica_Contig_10170.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=834bp|location=Sequence derived from alignment at C-australica_Contig_10170:2..835- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_10170:2..835- >mRNA_C-australica_Contig_10170.1.1 ID=mRNA_C-australica_Contig_10170.1.1|Name=mRNA_C-australica_Contig_10170.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=810bp|location=Sequence derived from alignment at C-australica_Contig_10170:2..835- (Chrysoparadoxa australica CS_1217)back to top |