mRNA_C-australica_Contig_1015.11.2 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_1015.11.2 vs. uniprot
Match: D8LHT5_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHT5_ECTSI) HSP 1 Score: 242 bits (617), Expect = 4.860e-66 Identity = 211/605 (34.88%), Postives = 289/605 (47.77%), Query Frame = 2 Query: 308 REVRMKVAQDRAAHFARADEADRSRPQRAKKQ------------RSRGSEFVRKAASGEGEEP-DAWCGPWTVARQLGAKRDEAKAMRQN-DMNGQADSEXXXXXXXXXXXXNQKEGKVAIEWTPTGKGSLLDKRNQVPPLFKSCLQFIADNFDCVDALGEVHAEIRNKLARILCQQLKLTPMALQRLAGPGVTEVILPDCSRIDPEQLMTSLLQCRGTLSVLSLEMCGRCFTNSTAAALASAGGLPNLTVLTLTGSYQLSESHLNKLLQSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----TLNECALVSADSLKKLSGLKQLTSLSMAHMDRLSDDSLSAILKGCGSSLRHLDISGCAMLTDTSIACISECCTSLSSLSAGLDPLFTNEQLIELFRFE-------------------AQDGGKSQALC------------------------------------------------------------LQKLSLRNLTVVEDNTIVALAKASSGTLTALDLAGCDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDLTLWGNMHIGDRFLLGHSNENLRLS 1831 RE +VA+ R AHFAR D+ RA R RG+ +A G+ P + W GP+ AR+L R+ A A+R++ +NG+A ++ + ++W PTGKGS K +P LF+ CL +ADNFD +++LG+V E+RN LA ++C+QLKLT ALQRL+ PGVTE+ILPDCSRI+P+Q+ S+LQCR TL VL L CGRC ++T AL AGG+P L + +L G+YQL+++ + +LL +L +C + D L+ L G+ L LS++ + +L+D L IL+ CG LRHLDIS C LTD ++ I E C L SL+ GL PL T+ + E+F++ AQD G C L ++SLR L V+D + A+A A SG+L +LD XXXXXXXXXXXXXXXXXXXXXXXX + L LWG M + DRFL GH+ E L +S Sbjct: 166 REAFAQVARARGAHFARPDKPPAPGTARAXXXXXXXXXXXXXSGRRRGAASDAASAGEGGDAPKELWPGPFAEARRLMDNREAAAALRESIRVNGKAQP-ASDEDGDSDDEGDETPPPIKVDWKPTGKGSRSGKSRTIPSLFRLCLDLLADNFDHIESLGDVSPEVRNHLAAVMCRQLKLTTEALQRLSEPGVTEIILPDCSRIEPDQMRNSILQCRRTLRVLRLGTCGRCVGDATLEALTKAGGVPRLEMASLAGTYQLTDAGVLELLSCCPRLTGLELSANSRITLKALEKMVDKERPIGMALTTLSLTDCIQLGPDELEPLKGMACLERLSLSGVIKLTDGILLQILEACGGRLRHLDISDCTDLTDATLKAIGERCGVLESLNLGLCPLLTSGAIQEIFQYSGSSAEASTGRLAQNPSATTAQDDGGINPACSGEGGALNGKXXXXXXXXXXXXXXXXXXXXXXXXXXXSASAEDGGDGGGARKGHTMLKSRLTRVSLRGLAQVDDKAVEAMAAACSGSLRSLDXXXXX-XXXXXXXXXXXXXXXXXXXXXXXXFCRSATEDGLGHLVDSCDGLRSLCLWGCMQVTDRFLRGHTKEELVIS 768
BLAST of mRNA_C-australica_Contig_1015.11.2 vs. uniprot
Match: A0A836CJL7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJL7_9STRA) HSP 1 Score: 202 bits (513), Expect = 1.990e-51 Identity = 198/649 (30.51%), Postives = 272/649 (41.91%), Query Frame = 2 Query: 302 NMREVRMKVAQDRAAHFARADEA-DRSRPQRAKKQRSRGSEFVRKAASGEGEEPDAWCGPWTVARQLGAKRDEAKAMRQNDMNGQ------ADSEXXXXXXXXXXXXNQKEGKVAIE-----------------WTPTGKG--SLLDKRNQVPPLFKSCLQ-----------------------------FIADNFDCVDALGEVHAEIRNKLARILCQQLKLTPMALQRLAGPGVTEVILPDCSRIDPEQL----------------------------------------MTSLLQCRGTLSVLSLEMCGRCFTNSTAAALASAGGLPNLTVLTLTGSYQLSESHLNKLLQSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-TLNECALVSADSLKKLSGLKQLTSLSMAHMDRLSDDSLSAILKGCGSSLRHLDISGCAMLTDTSIACISECCTSLSSLSAGLDPLFTNEQLIELFRFEAQDGGKSQALC------------------------------------------LQKLSLRNLTV--VEDNTIVALAKASSGTLTALDLAGCDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDLTLWGNMHIGDRFLLGHSNENLRL 1828 N+RE + +VA+DRAAHFAR D+ + + P ++ S G A EP+ WCGP+ AR+L R +A A RQ +NG+ +D+E K A W+ G+G SL+ + +V PLF CL +ADNFDCV+ LG+V E+RN+L +LC+QL+LTP L RLA PGV EV+LPDCSRID +Q+ +T+LL+CR TL+ L L MCGRCFT +T AALASAGGLP++T L LTG+Y L ++ L+ LL +A +L C V A +L ++ LT+L ++ + ++D++L+ +L CG L L ++ C TD ++ I LS PL T L LF A A C L+ ++LR V+D +V LA+A +GTL D G XXXXXXXXXXXXXX + L LWG++ IGD FL HSNE L + Sbjct: 193 NLREAQARVARDRAAHFARVDKTPEATAPAVVRRISSAGGSAAAAA------EPEEWCGPFATARRLLNARADAAAARQRKLNGEDVSEEDSDAENGDGSAKKPAKPAHKGANYARRCATDGVRSGTVPQAAWWWSGEGRGRGSLIGRACRVAPLFNLCLSVVVQWXXXXXXXXXXXXXXXXXXXXXXXXLVADNFDCVEELGDVTPEVRNRLGALLCRQLQLTPEVLSRLAAPGVAEVVLPDCSRIDAQQMQXXXXXXXXXXXXXXQPLPRSAAVVPRHAVRFDHTMASLGVTTLLRCRETLAALELRMCGRCFTGATVAALASAGGLPSVTRLALTGTYLLPDTALDALLAAAPRLRHLTLAQSARLGARGAAAIADRCGATLQSLSLASCEGVDAAALAHIARCGALTALDLSGVAAVTDEALARVLSACGEKLEALRVAHCDXXTDGAVQAI---------LSLADVPLVTGAALAVLFGDAAAAHDLGDAFCGPPLVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASHALASLRAVALRGAARGGVDDAVVVPLARACAGTLREADFGG--SGXXXXXXXXXXXXXXASLVRLDLSFCRGVSDAGVGRLVDAAPRLRALALWGDLQIGDAFLKRHSNEELHV 824
BLAST of mRNA_C-australica_Contig_1015.11.2 vs. uniprot
Match: A0A1Z5KS78_FISSO (DNA repair protein RAD7 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KS78_FISSO) HSP 1 Score: 112 bits (279), Expect = 3.630e-22 Identity = 101/360 (28.06%), Postives = 162/360 (45.00%), Query Frame = 2 Query: 452 EEPDAWCGPWTVARQLGAKRDEAKAMRQNDMNGQADSEXXXXXXXXXXXXNQKEGKV---AIEWTPTGKGSL-----------LDKRNQVPPLFKSCLQFIADNFDCVDALGEVHAEIRNKLARILCQQLKLTPMALQRLAGPGVTEVILPDCSRIDPEQLMTSLLQC-RGTLSVLSLEMCGRCFTNSTAAALASAGG-LPNLTVLTLTGSYQLSE---SHLNKLLQSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLNECALVSADSLKKL----SGLKQLTSLSMAHMDRLSDDSLSAILKGCGSSLRHLDISGCAMLTDTSIACISECCTSLSSLSAGLDPLFTNEQLIELF 1462 +E WCGP++VARQ+ A+R+EAK R +D + + E +++ K ++ W S L K+N P LF+ C+ F+ +F+ V++LG+V + IR+++A L + KL +L+ LA GV + L DCS I P+ L L G L L L+ CGRCF + A+ +A P+L +++ G+Y L++ + L L TL + L + D L + L+ + +LS+ + L+DD + +L G +L LD+S LTD ++ I E C +L SL+ L T E LF Sbjct: 71 QETHEWCGPFSVARQMIAQREEAKRKRLHDEEEEGEYESSHPLDSVRKEFEEEQQKKLHPSLSWKGRPSTSAPGYAKRRQRATLGKQNCFPTLFELCVDFVVQHFEHVESLGDVDSSIRSRIAHALVARGKLNNNSLEALAEKGVETLELIDCSHIAPDHLKRILHDLIPGGLRYLVLDQCGRCFGTAAVQAVVTASRKTPHLQAVSIGGAYLLNDEAAADLVTALAPTVTSLEFKACPLLGSLFCQALRDSFHSNQLLELTLEDIPL-TVDHFDILMSAKTSLRYIRNLSLQRLANLNDDIVEQLLAIMGPTLEGLDLSQDYHLTDRTLGAIREYCPALHSLTLNGLRLLTAEGFEALF 429
BLAST of mRNA_C-australica_Contig_1015.11.2 vs. uniprot
Match: A0A803MG37_CHEQI (Uncharacterized protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803MG37_CHEQI) HSP 1 Score: 112 bits (279), Expect = 7.530e-22 Identity = 104/409 (25.43%), Postives = 177/409 (43.28%), Query Frame = 2 Query: 461 DAWCGPWTVARQLGAKRDEAKAMRQNDMNGQADSEXXXXXXXXXXXXNQKEGKVAIEWTPTGKGSLLDKRNQVPPLFKSCLQFIADNFDCVDALGEVHAEIRNKLARILCQQLKLTPMALQRLAGPGVTEVILPDCSRIDPEQLMTSLLQCRG--TLSVLSLEMCGRCFTNSTAAALASAGGLPNLTVLTLTGSYQLSESHLNKLLQSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT-LNECALVSADS-LKKLSGLKQLTSLSMAHMDRLSDDSLSAILKGCGSSLRHLDISGCAMLTDTSIACISECCTSLSSLSAGLDPLFTNE----------------QLIELFRFEAQDGGKSQAL-----CLQKLSLRNLTVVEDNTIVALAKASSGTLTALDLAGC 1612 D W GP++ A ++ R++ + D++ + KEG + WTP + L + + P L CL +A+N D + +L V +RNKL+R+ C K+ P L L +E+ L DCS ++ E + L + ++VL L++CG C ++S+ GL LT ++L G+ ++S++ L L+ SA L++C + A L KL LK L LS+ + +SD + + + G +++ L ++ C LTD+S+ I+ C L L DP + + Q ++L R D + L L +LSL N++ V NT ++LA+ L +LDL+ C Sbjct: 307 DDWPGPFSTAMEIIRDREKNSNRQVRDLS------------------SVKEGFPLVSWTPRKESYLECSKREAPALISLCLNVLAENVDAITSLDSVPDALRNKLSRLFCDSRKMNPHFLSLLLDGSPSEIRLSDCSWLE-EHVFEKLFEACDFKIMTVLQLDLCGHCVSDSSLRKALVPKGLEALTTISLKGACRISDAGLAALVSSAPALRSMNLSQCSLLTDVGIESIANSLGLILQELYLDDCETLDAMRILPKLRQLKALEVLSLRGVVSVSDKFIKNLFEENGQNMKELVLANCVNLTDSSLKVIANTCPQLRVL----DPSYLGKLSDIGMAYITNGCRSIQDLKLCRSPFSDDAIAAFLETSRESLIELSLNNISKVGQNTTISLARRCKN-LESLDLSWC 691
BLAST of mRNA_C-australica_Contig_1015.11.2 vs. uniprot
Match: UPI000B787988 (F-box/LRR-repeat protein 14-like n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B787988) HSP 1 Score: 110 bits (275), Expect = 1.000e-21 Identity = 103/407 (25.31%), Postives = 176/407 (43.24%), Query Frame = 2 Query: 467 WCGPWTVARQLGAKRDEAKAMRQNDMNGQADSEXXXXXXXXXXXXNQKEGKVAIEWTPTGKGSLLDKRNQVPPLFKSCLQFIADNFDCVDALGEVHAEIRNKLARILCQQLKLTPMALQRLAGPGVTEVILPDCSRIDPEQLMTSLLQCRG--TLSVLSLEMCGRCFTNSTAAALASAGGLPNLTVLTLTGSYQLSESHLNKLLQSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT-LNECALVSADS-LKKLSGLKQLTSLSMAHMDRLSDDSLSAILKGCGSSLRHLDISGCAMLTDTSIACISECCTSLSSLSAGLDPLFTNE----------------QLIELFRFEAQDGGKSQAL-----CLQKLSLRNLTVVEDNTIVALAKASSGTLTALDLAGC 1612 W GP++ A ++ R++ + D++ + KEG + WTP + L + + P L CL +A+N D + +L V +RNKL+R+ C K+ P L L +E+ L DCS ++ E + L + ++VL L++CG C ++S+ GL LT ++L G+ ++S++ L L+ SA L++C + A L KL LK L LS+ + +SD + + + G +++ L ++ C LTD+S+ I+ C L L DP + + Q ++L R D + L L +LSL N++ V NT ++LA+ L +LDL+ C Sbjct: 78 WPGPFSTAMEIIRDREKNSNRQVRDLS------------------SVKEGFPLVSWTPRKESYLECSKREAPALISLCLNVLAENVDAITSLDSVPDALRNKLSRLFCDSRKMNPHFLSLLLDGSPSEIRLSDCSWLE-EHVFEKLFEACDFKIMTVLQLDLCGHCVSDSSLRKALVPKGLEALTTISLKGACRISDAGLAALVSSAPALRSMNLSQCSLLTDVGIESIANSLGLILQELYLDDCETLDAMRILPKLRQLKALEVLSLRGVVSVSDKFIKNLFEENGQNMKELVLANCVNLTDSSLKVIANTCPQLRVL----DPSYLGKLSDIGMAYITNGCRSIQDLKLCRSPFSDDAIAAFLETSRESLIELSLNNISKVGQNTTISLARRCKN-LESLDLSWC 460
BLAST of mRNA_C-australica_Contig_1015.11.2 vs. uniprot
Match: A0A803M8M0_CHEQI (Uncharacterized protein n=2 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803M8M0_CHEQI) HSP 1 Score: 110 bits (275), Expect = 1.020e-21 Identity = 107/403 (26.55%), Postives = 176/403 (43.67%), Query Frame = 2 Query: 467 WCGPWTVARQLGAKRDEAKAMRQNDMNGQADSEXXXXXXXXXXXXNQKEGKVAIEWTPTGKGSLLDKRNQVPPLFKSCLQFIADNFDCVDALGEVHAEIRNKLARILCQQLKLTPMALQRLAGPGVTEVILPDCSRIDPEQLMTSLLQCRGT--LSVLSLEMCGRCFTNSTAAALASAGGLPNLTVLTLTGSYQLSESHLNKLLQSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT-LNECALVSADS-LKKLSGLKQLTSLSMAHMDRLSDDSLSAILKGCGSSLRHLDISGCAMLTDTSIACISECCTSLSSLSAG-LDPL-------FTNE----QLIELFRFEAQDGGKSQAL-----CLQKLSLRNLTVVEDNTIVALAKASSGTLTALDLAGC 1612 W GP++ A ++ R++ + + D + + KEG + WTP + L ++ + P L CL +A+N D + +L V +RNKL+R+LC K+ P L L +E+ L DCS ++ E++ L + T ++VL L++CG C ++S GL LT ++L G ++S++ L L+ SA L++C + A L KL LK L LS+ + +SD + + G + + L ++ C LTD+S+ I+ C+ L L L L TN Q ++L R D + L L LSL N++ V NT ++LA+ L +LDL+ C Sbjct: 80 WPGPFSTAMKIIRDREKNSSRQARDSS------------------SVKEGFPLVSWTPRKERDLECRKREAPSLISLCLNVLAENVDAITSLDTVPDALRNKLSRLLCDSRKMNPHFLGLLLDGSPSEIRLSDCSWLE-ERVFEKLFEACDTKIMTVLQLDLCGHCVSDSLLRKALIPKGLEALTTISLKGGCRISDAGLAALVSSAPALRSMNLSQCTLLTDVGIDSIANSLGLILQELYLDDCETLDAMRILPKLQQLKALEVLSLRGIVSVSDKFIKKLFGENGQNTKELVLANCVNLTDSSLKVIANTCSQLRVLDLSYLGKLSDVGMAYITNGCRSIQDLKLCRSPFSDDAIAAFLETSGESLIDLSLNNISKVGQNTTISLARRCKN-LESLDLSWC 462
BLAST of mRNA_C-australica_Contig_1015.11.2 vs. uniprot
Match: A0A811R5E6_9POAL (Hypothetical protein n=2 Tax=Miscanthus lutarioriparius TaxID=422564 RepID=A0A811R5E6_9POAL) HSP 1 Score: 111 bits (277), Expect = 1.090e-21 Identity = 117/414 (28.26%), Postives = 187/414 (45.17%), Query Frame = 2 Query: 455 EPDA--WCGPWTVARQLGAKRDEAKAMRQNDMNGQADSEXXXXXXXXXXXXNQKEGKVA---IEWTPTGKGSLLDKRNQVPPLFKSCLQFIADNFDCVDALGEVHAEIRNKLARILCQQLKLTPMALQRLAGPGVTEVILPDCSRIDPEQLMTSLLQCRG-TLSVLSLEMCGRCFTN----STAAALASAGGLPNLTVLTLTGSYQLSESHLNKLLQSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT-LNECALVSADS-LKKLSGLKQLTSLSMAHMDRLSDDSLSAILKGCGSSLRHLDISGCAMLTDTSIACISECCTSLSSLSA-GLDPLFTNE----------QLIELFRFEAQDGGKSQAL-----CLQKLSLRNLTVVEDNTIVALAKASSGTLTALDLAGC 1612 +PDA W GP+ A ++ +R EAK +R ++N + K GK A I W+P+ K R Q P L CL +A++ +C+++LG + E++NKL +ILC K+ L L TE+ L +CS + + + +C +L L L++ GRC + ST A + + +P L ++L G+Y+LS++ L ++ +A ++EC V A + L L + L LSM+ + + D + ++ GS+L+ L +GC LT SI I E C L+SL LD L + + ++L R D SQ L CL +L L N+ V D T +A+++ S L ALDL+ C Sbjct: 232 DPDAQDWPGPFATAARIYEER-EAK-LRARELN------------------SSKVGKSANRVIVWSPS-KDRKNPARAQAPSLTSLCLNTLAEHSECIESLGGIPEELKNKLLKILCHSRKMKTHLLHELLCDSPTELHLSECSWLSEDDFEKTFEKCSTESLQDLQLDISGRCMPDYILPSTLAKVPNC--MPLLRKISLKGNYRLSDNGLGTIISAAPSLSSLNLCECSLLTSSGIDILANKLHSVLRELYIDECTNVDAMAILPALQKINHLEVLSMSGIQSVCDKFVKELIVVHGSNLKELAFAGCLELTSFSIKTIGEYCQELTSLDLRNLDRLRDSAMRHLRGCRLIRKLKLQRNAFSDEAVSQYLEKSGGCLTELMLNNVKKVGDLTALAISRKCSVLLEALDLSFC 622
BLAST of mRNA_C-australica_Contig_1015.11.2 vs. uniprot
Match: K0RFS3_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RFS3_THAOC) HSP 1 Score: 110 bits (274), Expect = 1.840e-21 Identity = 112/411 (27.25%), Postives = 171/411 (41.61%), Query Frame = 2 Query: 461 DAWCGPWTVARQLGAKRDEAKAMRQN-----DMNGQADSEXXXXXXXXXXXXNQKEGKVAIEWTP-------------------------TGKGSLLDKRNQVPPLFKSCLQFIADNFDCVDALGEVHAEIRNKLARILCQQLKLTPMALQRLAGPGVTEVILPDCSRIDPEQLMTSLLQCRGT-LSVLSLEMCGRCFTNSTAAALASAGGLPNLTVLTLTGSYQLSESHLNKLLQSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLNECAL----VSADSLKKLSG--LKQLTSLSMAHMDRLSDDSLSAILKGC-GSSLRHLDISGCAMLTDTSIACISECCTSLSSLSAGLDPLFTNEQLIELFRFEAQDGGKSQALCLQKLSLRNLTVVEDNTIVALAKASS 1579 + WCGP++VARQ+ A R+EA+ +R+ D + +A +KE ++ W TG G ++ VP LF C+ +IA NF+ V+ LG V +R L L + ++ A LA GV + L DC+++ +Q +L C L + L+ CGRCF N A L + L L+L+G+Y L +S L+ + L E AL +S ++L L L+QL SL + +D + D+ +S + K G SL ++D+SG LTD ++ I C T + + L L TN I L F L+KL L L V D+ + AKA+S Sbjct: 62 EEWCGPFSVARQMIAAREEARRLREEQQAAIDPDNKASHPLDYLHEQALLEKKRKENP-SMNWVGDNNSKDDSASANYYVKRRSRVSKMRTGSGG----KSCVPSLFHLCVDYIAKNFEHVETLGAVGHPVRRALCERLVELGEMNGAAFDVLAEKGVDTIELIDCAQVSEDQFCDALKICLPAGLKAIFLKHCGRCFGNQAAKILIDTKDI-QLFALSLSGAYILKDSCAADLISATARTLSSIDLTACPLIGAKFCQSIADCYRIEGNCLLELALQNVQISKEALLSLDSESLRQLKSLKLKEIDSVDDEVVSILTKSIDGGSLENVDLSGNPQLTDDILSSIRRCNTDGNLRALQLSGL-TNLTAIGLEAFFTSIDSLPAPPMLRKLDLSELASVNDSVVTLAAKAAS 465
BLAST of mRNA_C-australica_Contig_1015.11.2 vs. uniprot
Match: A0A0J8B8C1_BETVV (Uncharacterized protein n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8B8C1_BETVV) HSP 1 Score: 106 bits (264), Expect = 5.190e-20 Identity = 94/355 (26.48%), Postives = 156/355 (43.94%), Query Frame = 2 Query: 608 KEGKVAIEWTPTGKGSLLDKRNQVPPLFKSCLQFIADNFDCVDALGEVHAEIRNKLARILCQQLKLTPMALQRLAGPGVTEVILPDCSRIDPEQLMTSLLQCR-GTLSVLSLEMCGRCFTNSTAAALASAGGLPNLTVLTLTGSYQLSESHLNKLLQSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT-LNECALVSADS-LKKLSGLKQLTSLSMAHMDRLSDDSLSAILKGCGSSLRHLDISGCAMLTDTSIACISECCTSLSSLSAGLDPLFTNE------------QLIELFRFEAQDGG-----KSQALCLQKLSLRNLTVVEDNTIVALAKASSGTLTALDLAGC 1612 K G + WTP +G+ ++ P L CL +A N D + +L V +RNKL+++LC K+ P L L E+ L DCS ++ S C L+VL L++CG C ++S+ GLP LT ++L G+ ++S+ L L+ SA L++C + A L L LK L LS+ + +SD + ++ G +++ L ++ C LTD+S+ I+E C+ L L T+ Q ++L R D ++ L++L+L ++ V NT ++LA+ L +LDL+ C Sbjct: 360 KGGFPLVSWTPRKEGNPEWRKRVAPSLQSLCLNILAKNVDAITSLKYVPDALRNKLSQLLCDSRKMNPHFLNLLLDGSPAELRLADCSWLEERVFEESFEACDIKHLTVLQLDLCGHCLSDSSLHKALVPKGLPALTTISLKGACRISDGGLAALVSSAPALRSINLSQCSLLTDVGIDSIANSLGSILQELYLDDCDTLDAMRILPTLKRLKYLEVLSLRGIVSVSDKFIRELISTSGQNMKELVLANCVNLTDSSLKLIAEMCSQLHVLDLSCLGKLTDIGMAHLTNGCRTIQELKLCRSPFSDDAIAAFIETSGESLRELALNHIRKVGQNTTISLARRCRN-LESLDLSWC 713
BLAST of mRNA_C-australica_Contig_1015.11.2 vs. uniprot
Match: B7FSV7_PHATC (Rad7-like protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FSV7_PHATC) HSP 1 Score: 105 bits (261), Expect = 7.960e-20 Identity = 96/370 (25.95%), Postives = 163/370 (44.05%), Query Frame = 2 Query: 458 PDAWCGPWTVARQLGAKRDEAKAMRQNDMNGQADSEXXXXXXXXXXXXNQKEGKVA---IEWTPTGKGS---------------------LLDKRNQVPPLFKSCLQFIADNFDCVDALGEVHAEIRNKLARILCQQLKLTPMALQRLAGPGVTEVILPDCSRIDPEQLMTSLLQCRGT-LSVLSLEMCGRCFTNSTAAALASA--GGLPNLTVLTLTGSYQLSESHLNKLLQSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLN---ECALVSADSLKKLSG----LKQLTSLSMAHMDRLSDDSLSAILKGCGSSLRHLDISGCAMLTDTSIACISECC-------TSLSSLSA-GLDPLFTN 1441 P WCGP++VARQ+ A R+E K + + D E ++ + A I W + G+ L+ +++++P LF++CLQF+ D+ + V++LG+V + IR +L + L + KL P A +A G + L D S I EQL +L + + L + L+ GRCF + A A+ A L +L L++ G+Y L + KL+++ L E + ++ L+ L+G + L SLSM + L+D + +L C ++L LD+S LTD +++ + C + L L+ GL+ LFT+ Sbjct: 99 PQEWCGPFSVARQMIAAREETKRREEAEAENGVDQEYHHPLDQVMEELELEKKRKAHPSISWKSSLPGAHEQSGSARNSSLYAKRKRRANLIAQKHRIPTLFQTCLQFLVDHIEFVESLGDVDSSIRTRLLQELVARHKLDPAAFDAIAENGTDVLELTDASSITQEQLTKALQRMMPSGLQYIMLDQAGRCFGPAAADAIVEAMSSKLGSLQALSIGGAYLLKDVDAVKLIEAVAPTLSSLEYKACPMLGVQFCKGLTKTFATTGKLLELSLEDIPIGSEGLETLTGETTAFRHLKSLSMRRIIDLTDAMVHKLLLSCTNTLERLDLSDNHDLTDATLSSLRSCVGLQALHVSGLKHLTPQGLEALFTH 468 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1015.11.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_1015.11.2 >prot_C-australica_Contig_1015.11.2 ID=prot_C-australica_Contig_1015.11.2|Name=mRNA_C-australica_Contig_1015.11.2|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=582bp MAPAKAKGKGKGKGKGKGKGKKKDDVDEDGPASAEKRKAEEEPAAEEAGEback to top mRNA from alignment at C-australica_Contig_1015:11710..16658- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_1015.11.2 ID=mRNA_C-australica_Contig_1015.11.2|Name=mRNA_C-australica_Contig_1015.11.2|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=4949bp|location=Sequence derived from alignment at C-australica_Contig_1015:11710..16658- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_1015:11710..16658- >mRNA_C-australica_Contig_1015.11.2 ID=mRNA_C-australica_Contig_1015.11.2|Name=mRNA_C-australica_Contig_1015.11.2|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1746bp|location=Sequence derived from alignment at C-australica_Contig_1015:11710..16658- (Chrysoparadoxa australica CS_1217)back to top |