mRNA_C-australica_Contig_1014.3.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_1014.3.1 vs. uniprot
Match: A0A6H5J951_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J951_9PHAE) HSP 1 Score: 119 bits (297), Expect = 1.700e-24 Identity = 89/262 (33.97%), Postives = 133/262 (50.76%), Query Frame = 3 Query: 3 LRPLDHKLKYETDKLLRLAHTGEGAPE---------NDPLSYRPNPGALVGPGEEXXXXXXXXXXXXXXXXXASLSKGPGGAG--AGVYRPPRMTAVPYDDE---KNTEKKEKIATRKKERLRRSEILDTLREDFSERPE--RVVDDIGTNMFKEDAKRKMQXXXXXXXXXXXDHMIRMQLSRKQKKERRRITQDASMMSNIADVGNVGELMRWTDDAPE-----ESGPKKGKGSARNVGG--------ALGAAVGAVGQTM 701 LRP+D KLKY+TDKLLR+A + G+ + +DPLS+RP P + GE+ +S S G GG G+YR PR+ ++PYD++ + EK R++++LRR E+++TLRE+F E+PE R V + G + E +K+ DHM+R+ ++RK KK R R+ +DA + IADVG+ + +R +A E G G ALG A+GAVG +M Sbjct: 214 LRPMDRKLKYQTDKLLRVAASAGGSADGEVGGSGGDDDPLSFRPRPEGMAPWGEDPSTAAEDSGIDAER---SSSSAGRGGEADQEGLYRAPRLASMPYDEDGLSTGAARGEKRLERRRDKLRRGEVMETLREEFGEQPETVRAVGNAGASGVSEAKMKKLLEEDKERLDFEEDHMVRLTVTRKAKKARARMEKDAGRLETIADVGSAADFIRVAKNADGFGADMEGGDDDAFGXXXXXXXXXXXXXXXALGRAMGAVGGSM 472
BLAST of mRNA_C-australica_Contig_1014.3.1 vs. uniprot
Match: A0A8D0B410_9SAUR (Neuroguidin n=2 Tax=Salvator merianae TaxID=96440 RepID=A0A8D0B410_9SAUR) HSP 1 Score: 96.7 bits (239), Expect = 5.650e-18 Identity = 73/213 (34.27%), Postives = 104/213 (48.83%), Query Frame = 3 Query: 3 LRPLDHKLKYETDKLLRLAHTGEGAPENDPLSYRPNPGALVGPGEEXXXXXXXXXXXXXXXXXASLSKGPGGAGAGVYRPPRMTAVPYDDEKNTEKKEKIATRKKERLRRSEILDTLREDFSERPERVVDDI---GTNMFKEDAKRKMQXXXXXXXXXXXDHMIRMQLSRKQKKERRRITQDASMMSNIADVGNVGELMRWTDDAPEESGPKK 632 +RP+D KLKY+ DKL++ A TG ENDPL ++PNPG L+ E SKG G Y PPR+ V Y DE E+++KI + K+R S I+ L+E +S+ PE V + T +ED R M+R+ SRK+K RRR+ S +S++ G++ L T A E+SGP+K Sbjct: 112 MRPIDQKLKYQVDKLVKAAITGAPG-ENDPLRFKPNPGNLMSKLNESEESEDEEPADRKKAAGRDASKG----GGRKYVPPRLVPV-YYDETEAEREKKILEQAKKRALSSSIIRELKEQYSDAPEEVREGRYAHATRQSREDEHRTSYEESM---------MVRLNFSRKEKARRRRVGALTSQLSSLTHFGDISALTGATALAEEDSGPQK 309
BLAST of mRNA_C-australica_Contig_1014.3.1 vs. uniprot
Match: A0A835ZC79_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC79_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 7.660e-17 Identity = 114/285 (40.00%), Postives = 143/285 (50.18%), Query Frame = 3 Query: 3 LRPLDHKLKYETDKLLRLAHTGEGAPEN-----------------DPLSYRPNPGALVGPGEEXXXXXXXXXXXXXXXXXASL--------SKGPGGAG----------AGVYRPPRMTAVPYDDEK---NTEKKEKIATRKKERLRRSEILDTLREDFSERPERVVDDIGTNMFKEDAKRKMQXXXXXXXXXXXDHMIRMQLSRKQKKERRRITQDASMMSNIADVGNVGELMRWTDDAPEESG-------PKKGKGSARNVGGALGAAVGAVGQTMRKKKTRR 722 LRPLD +LKY+ DKL R A DPLS+RPNP ALV XXXXXXXXXXXXXXXX L ++G G +G YR PRM AVPY+++ + E+ R+++R R EIL+TLRE+F +RPE V G+ M + A+RK+ XXXXXXXX IADVGNVG+ MR DD EE G PK G S R VGGALG AVG++G+ +K+++ R Sbjct: 113 LRPLDARLKYQLDKLFRAAAAPXXXXXXXXXXXXXXXXXXXXXXADPLSFRPNPDALVAKDGGXXXXXXXXXXXXXXXXEPRLGGYRAKAAARGRRGGXXXXXXXXXXDSGAYRAPRMAAVPYEEDGAAGTRRRDERRVERRRDRARTGEILETLREEFGDRPEVVRGGGGSGMVNDQARRKLDREEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTIADVGNVGDFMRLGDD--EEGGVGVRGRGPKSG--SKRAVGGALGMAVGSLGRKHKKQRSSR 393
BLAST of mRNA_C-australica_Contig_1014.3.1 vs. uniprot
Match: A0A7S2R5P9_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R5P9_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 7.050e-16 Identity = 88/233 (37.77%), Postives = 133/233 (57.08%), Query Frame = 3 Query: 6 RPLDHKLKYETDKLLRLAHT-------GEGAPE--------NDPLSYRPNPGALVGPGEEXXXXXXXXXXXXXXXXX--------------ASLSKGP--------GGAGAGVYRPPRMTAVPY-DDEKNTEKKEKIATRKKERLRRSEILDTLREDFSERPERVVDDIG---TNMFKEDAKRKMQXXXXXXXXXXXDHMIRMQLSRKQKKERRRIT-QDASMMSNIADVGNV 578 RP++ K++Y+ DKLL L+ T G G + NDPLS+RPNP ++ GE+ XXXXXXXXXXXXXXXX A+LS+G + G+Y+ PR+ +VP+ +EK +KKE+I ++KER+R+SE L T++ F E+PE DD+G T + +A R++ + +R+ SRK+KK R RI ++AS ++ I+D+GN+ Sbjct: 68 RPMEKKMRYQLDKLLSLSSTSSTFASAGAGGDDATLSVNNNNDPLSFRPNPEKMITKGEDDXXXXXXXXXXXXXXXXXXXXXXXXXXXAAKAALSEGKKKNKKDVDNHSKVGIYKAPRLASVPFATEEKEEQKKERILKKQKERMRKSEFLQTIQSQFGEKPEE--DDMGGGATIGKQREAARRLTERDAEKTRYEEESFVRLATSRKEKKARNRIMREEASNLNAISDIGNI 298
BLAST of mRNA_C-australica_Contig_1014.3.1 vs. uniprot
Match: A0A670K2T8_PODMU (Neuroguidin n=3 Tax=Lacertinae TaxID=162266 RepID=A0A670K2T8_PODMU) HSP 1 Score: 90.1 bits (222), Expect = 8.900e-16 Identity = 67/215 (31.16%), Postives = 107/215 (49.77%), Query Frame = 3 Query: 3 LRPLDHKLKYETDKLLRLAHTGEGAPENDPLSYRPNPGALVGPGEEXXXXXXXXXXXXXXXXXASLSKGPGGAGAGVYRPPRMTAVPYDDEKNTEKKEKIATRKKERLRRSEILDTLREDFSERPERVVDDI---GTNMFKEDAKRKMQXXXXXXXXXXXDHMIRMQLSRKQKKERRRITQDASMMSNIADVGNVGELMRWTDDAPEESGPKKGK 638 +RP+D KLKY+ DKL++ A TG ENDPL ++PNPG L+ ++ SKG G+ Y PPR+ V YD E E+++K+ + K+R S I+ L+E +S+ PE V + + +ED R M+R+ ++RK+K RRR+ S +S++ G++ L + E+SGP++ K Sbjct: 112 MRPIDQKLKYQVDKLVKAAVTG-ALGENDPLRFKPNPGNLMSKLDDSEESEDEEAAGGAKNSGKGASKG----GSRKYVPPRLVPVHYD-ETEAEREKKLLEQAKKRALSSSIIRELKEQYSDAPEEVREGRYAHASRQSREDEHRT---------NYEESMMVRLNVTRKEKARRRRVGDLGSQLSSLTHFGDITALTGAAAPSGEDSGPQRKK 311
BLAST of mRNA_C-australica_Contig_1014.3.1 vs. uniprot
Match: A0A067CYY5_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CYY5_SAPPC) HSP 1 Score: 89.4 bits (220), Expect = 1.920e-15 Identity = 72/230 (31.30%), Postives = 110/230 (47.83%), Query Frame = 3 Query: 3 LRPLDHKLKYETDKLLRLAHTGEGAPENDPLSYRPNPGALVGPGEEXXXXXXXXXXXXXXXXXASLSKGPGGAGAGVYRPPRMTAVPYDDE-KNTEKKEKIATRKKERLRRSEILDTLREDFSERPERVVDDIGTNMFKEDAKRKMQXXXXXXXXXXXDHMIRMQLSRKQKKERRRITQDASMMSNIADVGNVGELMRWTDDAPEESGPKKGKGSARNVGGALGAAVGAV 689 +RPLD KLKY+ DKLL++A + + ++ LSY PNP AL + SK GVYR PRM +VPYD+E K +KK K R ++RL +S IL +RE++SERP+ ++ + + KE A + + +R+ SRK K +R+ +DA +I + N + D + G KG+ A G +G +G + Sbjct: 85 MRPLDRKLKYQVDKLLKIA-VSDVSQLDEALSYAPNPDALKA---DDDADSDAGENDDEDSYEGKKSKD------GVYRAPRMASVPYDEEEKEADKKAKRDERNRKRLAKSTILSEVREEYSERPQEILTSGSSALDKELANEAREKTDYEE-----ERFVRLVTSRKDKIRKRQRERDAMAADSIGKIDNFAGIHEALGDVVK--GQNKGRYVAPAQGKKIGGKIGGI 297
BLAST of mRNA_C-australica_Contig_1014.3.1 vs. uniprot
Match: A0A4D9DG17_9STRA (Sas10 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DG17_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 8.250e-15 Identity = 66/202 (32.67%), Postives = 97/202 (48.02%), Query Frame = 3 Query: 3 LRPLDHKLKYETDKLLRLAHT-GEGAPENDPLSYRPNPGALVGPGEEXXXXXXXXXXXXXXXXXASLSKGPGGAGAGV-YRPPRMTAVPYDDEKNTE-----KKEKIATRKKERLRRSEILDTLREDFSERPERVVDDIGTNMFKEDAKRKMQXXXXXXXXXXXDHMIRMQLSRKQKKERRRITQDASMMSNIADVGNVGEL 587 +RPLD KLKY D+L ++A G +DPLS+RPNP LVG L G V YRPPR+ AVPY ++ + KKE +A ++ E+LRRSE+L TL E + ++PE V + + +++ + R+ SR+ KK RR + A+ + IAD+G+ EL Sbjct: 325 MRPLDAKLKYHLDRLTKVASVDGSSRIHDDPLSFRPNPDLLVG---------KRGQDRVEDGNGKDLDNTEGNGHREVLYRPPRLAAVPYGEKTGVDGGRESKKEALARKRLEKLRRSELLQTLTEQYRDKPELVAEH---KSLENSVQQRADDAEEERRVFEEERFTRLVTSRRDKKARRLANEQATRLETIADIGDFHEL 514
BLAST of mRNA_C-australica_Contig_1014.3.1 vs. uniprot
Match: A0A5D6XJV1_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XJV1_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 1.070e-14 Identity = 67/193 (34.72%), Postives = 100/193 (51.81%), Query Frame = 3 Query: 3 LRPLDHKLKYETDKLLRLAHTGEGAPENDPLSYRPNPGALVGPGEEXXXXXXXXXXXXXXXXXASLSKGPGGAGA-GVYRPPRMTAVPYDDE-KNTEKKEKIATRKKERLRRSEILDTLREDFSERPERVVDDIGTNMFKEDAKRKMQXXXXXXXXXXXDHMIRMQLSRKQKKERRRITQDASMMSNIADVGN 575 +RPLD KLKY+ DK+L++A +G G ++ L+Y PNP LVG + S PG A G+YR PR+ +VPYD+E K KK K R ++R+++S IL LRE+FSERP + + + KE A+ + + +R+ SRK K +R+ Q+A+ N+ V N Sbjct: 89 VRPLDRKLKYQIDKMLKVAVSG-GKDMDESLNYAPNPDQLVGQDGQADSDDD--------------SGRPGAASKDGIYRAPRLASVPYDEEEKEAAKKAKREERNRKRMQKSTILSELREEFSERPTEIFAGGSSAVDKELAREEAEKKDYEE-----SRFVRLVTSRKDKIRKRQREQEANRADNVGSVDN 261
BLAST of mRNA_C-australica_Contig_1014.3.1 vs. uniprot
Match: A0A3M6VTM7_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VTM7_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 1.480e-14 Identity = 75/249 (30.12%), Postives = 116/249 (46.59%), Query Frame = 3 Query: 3 LRPLDHKLKYETDKLLRLAHT-GEGAPENDPLSYRPNPGALVGPGEEXXXXXXXXXXXXXXXXXASLSKGPGGAGAGVYRPPRMTAVPYDDEKNTEKKE-KIATRKKERLRRSEILDTLREDFSERPERVVDD----IGTNMFKEDAKRKMQXXXXXXXXXXXDHMIRMQLSRKQKKERRRITQDASMMSNIADVGNVGELM------RWTDDAPEESGPKKGKGSARNVGGALGAAVGAVGQTMRKKK 713 +RPLD K+KY+ DK+L++A + G+G E+ LSY PNPG L G +G GA G+YR PR+ AVPY++E+ + K+ K R ++RL++S IL LRE+FSERP ++ + + +E+A++K +R+ SRK K +R+ +AS N+ + N + + P PKK +GG G V KK+ Sbjct: 82 IRPLDRKMKYQVDKMLKVALSDGKGLDES--LSYAPNPGQLATSG--------------GLDDDEEGIEGSSGAKDGIYRAPRLAAVPYEEEERAQVKQAKQDERNRKRLQKSTILAELREEFSERPTEILASGTHVVDKEIAREEAEKK---------DFEESRFVRVVTSRKDKIRKRQREMEASRTDNVGSIENFASVQDILSLDKSKHRIPTPREPKK-------IGGKTGGIFSHVDAPTEKKR 298
BLAST of mRNA_C-australica_Contig_1014.3.1 vs. uniprot
Match: UPI00138FC27A (neuroguidin n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI00138FC27A) HSP 1 Score: 86.3 bits (212), Expect = 1.660e-14 Identity = 72/212 (33.96%), Postives = 112/212 (52.83%), Query Frame = 3 Query: 3 LRPLDHKLKYETDKLLRLAHTGEGAPENDPLSYRPNPGALVGPGEEXXXXXXXXXXXXXXXXXASLSKGPGGAGAGVYRPPRMTAVPYDDEKNTEKKEKIATRKKERLRRSEILDTLREDFSERPERVVDDIGTNMFKEDAKRKMQXXXXXXXXXXXDHMIRMQLSRKQKKERRRITQDASMMSNIADVGNVGELMRWTDDAPEESGPKKGK 638 LRP+D K+KY+ DKL++L G +NDPL +RPNP ++G +E + +K +G+Y PP+++AVPYD+ + K+ K+ K+R+ S +L LRE+FSE P + +D N A K XXXXXXXXXXX + IR+ +++K + R+ D +++ +D+ L D+ P KGK Sbjct: 117 LRPIDQKMKYQIDKLVKLVTAGLAGTDNDPLRFRPNPENMLGKLDESEDDSET----------SDTAKA-----SGIYVPPKVSAVPYDEGYGSRKERKLEEHTKKRVLNSRLLQELREEFSEAPVEIREDTLNNR----AMLKXXXXXXXXXXXXXXNFIRLAAKKRKKGDSARMKSDLDDLTSFSDLS---ALTGDKDERPSRFNSSKGK 306 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1014.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_1014.3.1 >prot_C-australica_Contig_1014.3.1 ID=prot_C-australica_Contig_1014.3.1|Name=mRNA_C-australica_Contig_1014.3.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=160bp MTAVPYDDEKNTEKKEKIATRKKERLRRSEILDTLREDFSERPERVVDDIback to top mRNA from alignment at C-australica_Contig_1014:3195..6932+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_1014.3.1 ID=mRNA_C-australica_Contig_1014.3.1|Name=mRNA_C-australica_Contig_1014.3.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=3738bp|location=Sequence derived from alignment at C-australica_Contig_1014:3195..6932+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_1014:3195..6932+ >mRNA_C-australica_Contig_1014.3.1 ID=mRNA_C-australica_Contig_1014.3.1|Name=mRNA_C-australica_Contig_1014.3.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=480bp|location=Sequence derived from alignment at C-australica_Contig_1014:3195..6932+ (Chrysoparadoxa australica CS_1217)back to top |