mRNA_C-australica_Contig_1013.1.3 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_1013.1.3 vs. uniprot
Match: A0A6H5JJ63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ63_9PHAE) HSP 1 Score: 130 bits (328), Expect = 7.170e-31 Identity = 98/255 (38.43%), Postives = 129/255 (50.59%), Query Frame = 3 Query: 144 IDIVRHGETTANRDGIIQGHSNYDLTDSGVEQALAVAERLSSTKYNKVYSSDLIRASRTAETIVSALNASGEQSHTCHLEAN--LREFALGVFENLPRGTSLEDAQQIKAADKTLGHAP------LHEKPGDVEARAKQFLRHLMDDP------------------------DLATKPPSR--------CLVVSHGGFIRTMLSSVMGCKEVRS--LSNCSVSRVQVTKCEAGK--LSYEILSIDDTSHLTAEQI 776 I VRHGETTANR+GIIQGH +YDLT G+ QA+A A RL Y + YSSDL RAS TAE I+ E+ +L LREFALG E LPRGT+ A+++KA + G +P L E P DV RA+QFL L+ D + A +R LVVSHGG + M+ +VMG +E + NC+V+ V V GK + Y +++D SH ++ Sbjct: 22 IHFVRHGETTANREGIIQGHQDYDLTPIGINQAVATAIRLRGNTYWRTYSSDLTRASHTAEIIL-------EEHPGANLRKTPLLREFALGAQEGLPRGTTWPRARRMKA--EAAGVSPVAYKESLRESPADVHKRAQQFLTSLVSDAVRAADDGTVNRVGEGQNGRHDSAAEAAAAAEARHRDENARLALVVSHGGILNVMMLTVMGLEERACPLMRNCAVAVVDVFDDGRGKGRVRYVPRTLNDVSHFQVSEL 267
BLAST of mRNA_C-australica_Contig_1013.1.3 vs. uniprot
Match: D8LF56_ECTSI (Phosphoglycerate mutase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF56_ECTSI) HSP 1 Score: 129 bits (325), Expect = 1.230e-30 Identity = 100/267 (37.45%), Postives = 133/267 (49.81%), Query Frame = 3 Query: 144 IDIVRHGETTANRDGIIQGHSNYDLTDSGVEQALAVAERLSSTKYNKVYSSDLIRASRTAETIVSALNASGEQSHTCHLEAN--LREFALGVFENLPRGTSLEDAQQIKAADKTLGHAP------LHEKPGDVEARAKQFLRHLMDDP------------------------DLATKPPSR--------CLVVSHGGFIRTMLSSVMGCKEVRS--LSNCSVSRVQVTKCEAGK--LSYEILSIDDTSHLTA--EQITTCGTKIENI 806 + VRHGETTANR+GIIQGH +YDLT G+ QA+A A RL Y + YSSDL RAS TAE I+ E+ +L LREFALG E LPRGT+ A+++KA + G +P L E P DV RA+QFL L+ D + A +R LVVSHGG + M+ +VMG E + NC+V+ V V GK + Y +++D SH + Q T K+ ++ Sbjct: 8 LHFVRHGETTANREGIIQGHQDYDLTPIGINQAVATAIRLRGNTYWQTYSSDLTRASHTAEIIL-------EEHAGANLRKTPLLREFALGAQEGLPRGTTWPRARRMKA--EAAGVSPVAYNESLRESPADVHKRAQQFLASLVSDAVRAADDGTVNRVGQGRNGRHDSAAEAAAAAEARNGDENARLALVVSHGGILNVMMLTVMGLDEKACPLMRNCAVAVVDVVDDGRGKGRVRYVPRTLNDVSHFQSIRRQCTASADKMMSL 265
BLAST of mRNA_C-australica_Contig_1013.1.3 vs. uniprot
Match: UPI001C7B1555 (phosphoglycerate mutase-like protein n=1 Tax=Guyanagaster necrorhizus MCA 3950 TaxID=1450536 RepID=UPI001C7B1555) HSP 1 Score: 92.4 bits (228), Expect = 9.350e-18 Identity = 77/233 (33.05%), Postives = 112/233 (48.07%), Query Frame = 3 Query: 144 IDIVRHGETTANRDGIIQGHSNYDLTDSGVEQALAVAERLSSTKYNKVYSSDLIRASRTAETIVSALNASGEQSHTCHLEANLREFALGVFENLPRGTSLEDAQQIKAADKTLGHAPLHEKPGDVEARAKQFL-----RHLMDDPDLATKPPSRCLVVSHGGFIRTMLSSVMGCKEVRSLS--------NCSVSRVQVTKCEAGKLSYEILSIDDTSHLTAEQITTCGTKIEN 803 I +VRHGET ANR I+QG + L +SG+EQA V+E L +++ YSSDL RAS+TAE I+ CH LR+ + G+ E G+ K A ++ P EK R+ + RH+ P+ A P LVVSHGGFI T++ +++ K + + NCSVS + + K GK E++ D SHL ++ E+ Sbjct: 6 IYLVRHGETEANRREIVQGQLDTHLNESGIEQAALVSEALQKISFDEGYSSDLSRASKTAEMILE-----------CHPRVQLRKQS-GLRER-HLGSLQGQTHARKRAFGSINSDPTAEKADAFVTRSLSWWENSVRRHIETLPERAM--PYHILVVSHGGFISTLIKNLLAKKRIAKVVSVDDWRCYNCSVSIIDIRK--DGKA--ELVQYSDISHLGNSKVVESNADTED 219
BLAST of mRNA_C-australica_Contig_1013.1.3 vs. uniprot
Match: A0A7W8JQ26_9DEIO (Putative phosphoglycerate mutase n=10 Tax=Deinococcus TaxID=1298 RepID=A0A7W8JQ26_9DEIO) HSP 1 Score: 92.4 bits (228), Expect = 1.600e-17 Identity = 67/207 (32.37%), Postives = 101/207 (48.79%), Query Frame = 3 Query: 150 IVRHGETTANRDGIIQGHSNYDLTDSGVEQALAVAERLSSTKYNKVYSSDLIRASRTAETIVSALNASGEQSHTCHLEANLREFALGVFENLPRGTSLE---DAQQIKAADKTLGHAPLHEKPGDVEARAKQFLRHLMDDPDLATKPPSRCLVVSHGGFIRTMLSSVMGCKEVRSLSNCSVSRVQVTKCEAGKLSYEILSIDDTSHL 761 +VRHGE+T N +G QG ++ L+ GV QA ++AERL+ ++ VY+SDL+RAS+TAET+ L E + T + LRE +G L E D + D P E D+ R+ L L A P R LV +HGG +R + +G + + SV+ +T+ G+ S +L +D +HL Sbjct: 32 VVRHGESTWNTEGRYQGQADVPLSHVGVLQAASLAERLTGQHFDAVYTSDLLRASQTAETVAERL----EGAPTVRPDPGLREIDVGELSGLVIADIRERHPDYLEALKTDPWTTRRPGGESMKDLYTRSGAALDALR-----ARHPGQRVLVFTHGGVVRVAVGLALGGVPANAWARLSVTNTSITRVLLGENSGTLLGFNDDAHL 229
BLAST of mRNA_C-australica_Contig_1013.1.3 vs. uniprot
Match: D5WV65_KYRT2 (Phosphoglycerate mutase n=4 Tax=Kyrpidia TaxID=1129704 RepID=D5WV65_KYRT2) HSP 1 Score: 90.9 bits (224), Expect = 2.770e-17 Identity = 77/213 (36.15%), Postives = 109/213 (51.17%), Query Frame = 3 Query: 144 IDIVRHGETTANRDGIIQGHSNYDLTDSGVEQALAVAERLSSTKYNKVYSSDLIRASRTAETIVSALNASGEQSHTCHLEANLREFALGVFENLPRGTSLEDAQQIKAADKTLGHAPLHEKPGDVEARAKQFLRHLMDDPDLATKPP-SRCLVVSHGGFIRTMLSSVMGCKEVRSLSNCSVSRVQVTKCEAGKLSYEILSIDDTSHLTAEQIT 779 I +VRHGETT NR+ +QGH + LTD G QA AVA RL+ ++ VYSSDL+RA TAE I A G T + LRE + G E L R E AQ+ GH+ HE G VE + R D+ + SR +VVSHGG+IR +L + +++S + +T + ++ ++ +DTSHL +I+ Sbjct: 13 ICLVRHGETTWNREQRLQGHRDVPLTDVGRRQAEAVARRLAEGHWDAVYSSDLMRARYTAEVIAKAC---GIHFVT---DPRLRERSYGQLEGLTR---TEIAQRYPHL---AGHSWEHEDSG-VEPWERMADRAQAALADMTARHKGSRLIVVSHGGWIRALLGRLFPNWDLKS----PIDNTSITVLRQERDTWRLVVANDTSHLVEPRIS 208
BLAST of mRNA_C-australica_Contig_1013.1.3 vs. uniprot
Match: A0A2H3E0H9_ARMGA (Phosphoglycerate mutase-like protein n=3 Tax=Armillaria TaxID=47424 RepID=A0A2H3E0H9_ARMGA) HSP 1 Score: 90.9 bits (224), Expect = 3.230e-17 Identity = 79/233 (33.91%), Postives = 112/233 (48.07%), Query Frame = 3 Query: 144 IDIVRHGETTANRDGIIQGHSNYDLTDSGVEQALAVAERLSSTKYNKVYSSDLIRASRTAETIVSALNASGEQSHTCHLEANLREFALGVFENLPRGTSLEDAQQIKAADKTLGHAPLHEKPGDVEARAKQF----LRHLMDD-PDLATKPPSRCLVVSHGGFIRTMLSSVMGCKEVRSLSN--------CSVSRVQVTKCEAGKLSYEILSIDDTSHLTAEQITTCGTKIEN 803 I +VRHGET ANR I+QG + L SG+EQA V+E L +++ YSSDL RAS+TAE I+ + + C ++ LRE LG + K A + P EK R+ + +RH ++ PD AT P LVVSHGGFI T++ ++ K V N CSVS + + K GK E++ D SHL + ++ E+ Sbjct: 6 IYLVRHGETEANRREIVQGQLDTYLNKSGIEQAALVSEELQKIPFDEGYSSDLSRASKTAEMILK----NHPRVQLCE-QSGLRERHLGRLQG--------QTHAQKRAFGDINSDPTAEKSDAFVKRSLSWWDNSIRHHLETLPDRAT--PYHILVVSHGGFISTLIKNLAAKKRVTKAVNVDDWRCYNCSVSIIDIRK--DGKA--ELVQYSDISHLGSRKVVESNADTED 219
BLAST of mRNA_C-australica_Contig_1013.1.3 vs. uniprot
Match: A0A7C6X1W2_9FIRM (Histidine phosphatase family protein n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A7C6X1W2_9FIRM) HSP 1 Score: 90.5 bits (223), Expect = 4.030e-17 Identity = 76/213 (35.68%), Postives = 103/213 (48.36%), Query Frame = 3 Query: 150 IVRHGETTANRDGIIQGHSNYDLTDSGVEQALAVAERLSSTKYNKVYSSDLIRASRTAETIVSALNASGEQSHTCHL--EANLREFALGVFENLPRGTSLEDAQQIKAADKTLGHAPLH-EKPGDVEARA--KQFLRHLMDDPDLATKPPSRCLVVSHGGFIRTMLSSVM--GCKEVRSLSNCSVSRVQVTKCEAGKLSYEILSIDDTSHLTA 767 +VRHGET AN+ GI+QGH + L+++G QA AVAE LS + + VYSSDL RA TAE I+ TC L + LRE +G L S + A L H P +PG E+R + + +DD K +R +VSHGG I +L+ V G ++NCSV T E + + I+D HL A Sbjct: 6 VVRHGETEANKSGILQGHLDVPLSETGRRQAKAVAEALSRVRLDAVYSSDLSRARETAEAIM--------MGRTCRLILDRRLRELDMGGISGLTLEESRAKYPEFHAR---LAHDPYGVRRPGGGESRLDLRDRMSRALDDIYERHKD-ARIGIVSHGGAINALLNIVSPDGTWPSLVVANCSV-----TVLERDDTGWRTVKINDCDHLRA 201
BLAST of mRNA_C-australica_Contig_1013.1.3 vs. uniprot
Match: A0A1H0DUW3_9BACI (Uncharacterized phosphatase n=1 Tax=Alkalicoccus daliensis TaxID=745820 RepID=A0A1H0DUW3_9BACI) HSP 1 Score: 88.2 bits (217), Expect = 2.030e-16 Identity = 60/161 (37.27%), Postives = 79/161 (49.07%), Query Frame = 3 Query: 150 IVRHGETTANRDGIIQGHSNYDLTDSGVEQALAVAERLSSTKYNKVYSSDLIRASRTAETIVSALNASGEQSHTCHLEANLREFALGVFENLPRGTSLEDAQQIKAADKTLGHAPLHEKPGDVEARAKQFLRHLMDDPDLATKPPSRCLVVSHGGFIRTML 632 ++RHG++ AN IIQG S Y LT+ G+ QA A L ++KVYSSDL RA RTAE I L + LRE LG EN PRG L + +++ P E + AR + +RH ++ + T L VSHGGFI L Sbjct: 6 LIRHGQSEANVKHIIQGQSEYPLTNLGIRQAELAARSLQYIHFDKVYSSDLNRAFRTAEIIADPLKMKPQGME------ELREVFLGPLENKPRGDILAEYPELQHRSFVTSGIPGTETFDAISARCLKLMRHWHENHEGET-----ILAVSHGGFISIFL 155
BLAST of mRNA_C-australica_Contig_1013.1.3 vs. uniprot
Match: A0A2Z3JCS2_9DEIO (Histidine phosphatase family protein n=1 Tax=Deinococcus irradiatisoli TaxID=2202254 RepID=A0A2Z3JCS2_9DEIO) HSP 1 Score: 89.0 bits (219), Expect = 2.220e-16 Identity = 67/208 (32.21%), Postives = 101/208 (48.56%), Query Frame = 3 Query: 150 IVRHGETTANRDGIIQGHSNYDLTDSGVEQALAVAERLSSTKYNKVYSSDLIRASRTAETIVSALNASGEQSHTCHLEANLREFALGVFENLPRGTSLEDAQQIKAA---DKTLGHAPLHEKPGDVEARAKQFLRHLMDDPDLATKPPSRCLVV-SHGGFIRTMLSSVMGCKEVRSLSNCSVSRVQVTKCEAGKLSYEILSIDDTSHL 761 +VRHGE+T N DG QG ++ L+ GV QA ++AERL+ +++ VYSSDL RASRTAE + L E +E LRE +G L + AA D P E D+ ARA L +LA + +C++V +HGG +R + +G + + SV+ +T+ + +L +D +HL Sbjct: 24 VVRHGESTWNADGRYQGQTDVPLSLVGVLQASSLAERLTGQRFDAVYSSDLQRASRTAEIVTERLLGEPE----VQIETGLREIDVGDLSGLVLPEIRRRYPEYLAALQADPWATRRPGGESMADLYARASATLT------ELAARHRGQCVMVFTHGGVVRVAVGLALGGVPANAWARLSVANTSITRVLLSEQGGTLLGFNDAAHL 221
BLAST of mRNA_C-australica_Contig_1013.1.3 vs. uniprot
Match: UPI0016670ADB (histidine phosphatase family protein n=1 Tax=Deinococcus aerophilus TaxID=522488 RepID=UPI0016670ADB) HSP 1 Score: 89.0 bits (219), Expect = 2.360e-16 Identity = 66/207 (31.88%), Postives = 97/207 (46.86%), Query Frame = 3 Query: 150 IVRHGETTANRDGIIQGHSNYDLTDSGVEQALAVAERLSSTKYNKVYSSDLIRASRTAETIVSALNASGEQSHTCHLEANLREFALGVFENLPRGTSLE---DAQQIKAADKTLGHAPLHEKPGDVEARAKQFLRHLMDDPDLATKPPSRCLVVSHGGFIRTMLSSVMGCKEVRSLSNCSVSRVQVTKCEAGKLSYEILSIDDTSHL 761 +VRHGE+T N +G QG ++ L+ GV QA ++AERL+ + VYSSDL+RAS+TAE + L LRE +G L E + + AD P E D+ R + L L A P R LVV+HGG +R + +G + + SV+ +T+ G+ S +L +D +HL Sbjct: 28 VVRHGESTWNTEGRYQGQADVPLSHIGVLQAASLAERLTGKHFAAVYSSDLLRASQTAEAVAERLEGQPRVQQV----PGLREIDVGELSGLVIADIRERYPEYLEALVADPWTTRRPGGESMQDLYGRCGEALHALR-----ARHPGGRVLVVTHGGVVRVAVGLALGGVPEGAWARLSVTNTSITRVLLGENSGTLLGFNDDAHL 225 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1013.1.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_1013.1.3 >prot_C-australica_Contig_1013.1.3 ID=prot_C-australica_Contig_1013.1.3|Name=mRNA_C-australica_Contig_1013.1.3|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=253bp MRSQLSILLCVCLLSKLCQGFMLTASLLIDIVRHGETTANRDGIIQGHSNback to top mRNA from alignment at C-australica_Contig_1013:740..2711+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_1013.1.3 ID=mRNA_C-australica_Contig_1013.1.3|Name=mRNA_C-australica_Contig_1013.1.3|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1972bp|location=Sequence derived from alignment at C-australica_Contig_1013:740..2711+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_1013:740..2711+ >mRNA_C-australica_Contig_1013.1.3 ID=mRNA_C-australica_Contig_1013.1.3|Name=mRNA_C-australica_Contig_1013.1.3|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=759bp|location=Sequence derived from alignment at C-australica_Contig_1013:740..2711+ (Chrysoparadoxa australica CS_1217)back to top |