mRNA_C-australica_Contig_10129.1.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_10129.1.1 vs. uniprot
Match: A0A222E361_9RHOB (HTH-type transcriptional repressor RspR n=3 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A222E361_9RHOB) HSP 1 Score: 132 bits (331), Expect = 6.570e-37 Identity = 68/72 (94.44%), Postives = 68/72 (94.44%), Query Frame = 1 Query: 1 EKPKVARLCTLGGSKEDRMPQLVEDHREIATAVKDHDPDRAVAAGMLHLSRLDDTIERISATNSTYFDSEND 216 EK KV RLCTLG SKEDRMPQLVEDHREIATAVKDHD DRAVAAGMLHLSRLDDTIERISATNSTYFDSEND Sbjct: 159 EKIKVDRLCTLGLSKEDRMPQLVEDHREIATAVKDHDADRAVAAGMLHLSRLDDTIERISATNSTYFDSEND 230
BLAST of mRNA_C-australica_Contig_10129.1.1 vs. uniprot
Match: A0A848W284_9RHOB (GntR family transcriptional regulator n=1 Tax=Silicimonas sp. TaxID=2058390 RepID=A0A848W284_9RHOB) HSP 1 Score: 106 bits (265), Expect = 5.560e-27 Identity = 53/68 (77.94%), Postives = 59/68 (86.76%), Query Frame = 1 Query: 1 EKPKVARLCTLGGSKEDRMPQLVEDHREIATAVKDHDPDRAVAAGMLHLSRLDDTIERISATNSTYFD 204 EK KV RLC LG SKEDRMP+LVEDHR IA AVK HDP+RAV AGMLHLSRLD+TIERI ATN++YF+ Sbjct: 159 EKSKVDRLCMLGLSKEDRMPELVEDHRAIAAAVKAHDPERAVDAGMLHLSRLDETIERIGATNASYFE 226
BLAST of mRNA_C-australica_Contig_10129.1.1 vs. uniprot
Match: A0A2C9CVF9_9RHOB (DNA-binding transcriptional regulator, GntR family n=1 Tax=Monaibacterium marinum TaxID=1690039 RepID=A0A2C9CVF9_9RHOB) HSP 1 Score: 104 bits (259), Expect = 4.400e-26 Identity = 52/68 (76.47%), Postives = 57/68 (83.82%), Query Frame = 1 Query: 1 EKPKVARLCTLGGSKEDRMPQLVEDHREIATAVKDHDPDRAVAAGMLHLSRLDDTIERISATNSTYFD 204 EK KV RLC LG SKEDRMP+LVEDHR IA A+K HD DRA+ AGMLHLSRLDDTI RISATN+ YF+ Sbjct: 159 EKSKVDRLCVLGLSKEDRMPELVEDHRVIADALKAHDADRAIEAGMLHLSRLDDTIRRISATNANYFE 226
BLAST of mRNA_C-australica_Contig_10129.1.1 vs. uniprot
Match: A0A2D8WYI8_PARSX (GntR family transcriptional regulator n=1 Tax=Paracoccus sp. TaxID=267 RepID=A0A2D8WYI8_PARSX) HSP 1 Score: 100 bits (250), Expect = 9.770e-25 Identity = 51/70 (72.86%), Postives = 57/70 (81.43%), Query Frame = 1 Query: 1 EKPKVARLCTLGGSKEDRMPQLVEDHREIATAVKDHDPDRAVAAGMLHLSRLDDTIERISATNSTYFDSE 210 EK KV RLCTLG SKEDRMP LV DHR IA AVK+HD ++AV G+LHLSRLDDTI RISATN+ YF+ E Sbjct: 159 EKSKVDRLCTLGLSKEDRMPHLVADHRGIAEAVKNHDAEKAVEIGVLHLSRLDDTIARISATNANYFEPE 228
BLAST of mRNA_C-australica_Contig_10129.1.1 vs. uniprot
Match: A0A2M8J4S7_9RHOB (GntR family transcriptional regulator n=1 Tax=Pseudooceanicola lipolyticus TaxID=2029104 RepID=A0A2M8J4S7_9RHOB) HSP 1 Score: 100 bits (249), Expect = 1.380e-24 Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 1 Query: 1 EKPKVARLCTLGGSKEDRMPQLVEDHREIATAVKDHDPDRAVAAGMLHLSRLDDTIERISATNSTYFDSE 210 EK KV RLC LG +KE RMP+LVEDHR IA AVK HD +RAVAAG+LHLSRLD+TIERIS+ N+ YF+ E Sbjct: 159 EKSKVDRLCVLGLAKESRMPELVEDHRAIAEAVKAHDAERAVAAGILHLSRLDETIERISSNNANYFEPE 228
BLAST of mRNA_C-australica_Contig_10129.1.1 vs. uniprot
Match: A0A6B3RRD9_9RHOB (GntR family transcriptional regulator n=2 Tax=Tabrizicola algicola TaxID=2709381 RepID=A0A6B3RRD9_9RHOB) HSP 1 Score: 99.4 bits (246), Expect = 3.870e-24 Identity = 51/68 (75.00%), Postives = 55/68 (80.88%), Query Frame = 1 Query: 1 EKPKVARLCTLGGSKEDRMPQLVEDHREIATAVKDHDPDRAVAAGMLHLSRLDDTIERISATNSTYFD 204 EK KV RLC LG SKEDRMP+LVEDHR IA AVK +DP RAV GMLHLSRLD TIERIS TN+ YF+ Sbjct: 159 EKSKVDRLCMLGLSKEDRMPELVEDHRAIAAAVKANDPARAVELGMLHLSRLDKTIERISVTNANYFE 226
BLAST of mRNA_C-australica_Contig_10129.1.1 vs. uniprot
Match: A0A2T0VTI5_9RHOB (DNA-binding GntR family transcriptional regulator n=1 Tax=Yoonia maritima TaxID=1435347 RepID=A0A2T0VTI5_9RHOB) HSP 1 Score: 98.6 bits (244), Expect = 7.700e-24 Identity = 49/68 (72.06%), Postives = 56/68 (82.35%), Query Frame = 1 Query: 1 EKPKVARLCTLGGSKEDRMPQLVEDHREIATAVKDHDPDRAVAAGMLHLSRLDDTIERISATNSTYFD 204 EK KV RLC LG +KEDRMP+LV DH+ IA AVK HDPDRAV GMLHLSRLD+TIE ISAT ++YF+ Sbjct: 159 EKSKVDRLCMLGLAKEDRMPELVADHKAIAEAVKKHDPDRAVEIGMLHLSRLDETIEGISATKASYFE 226
BLAST of mRNA_C-australica_Contig_10129.1.1 vs. uniprot
Match: A0A411YXG0_9RHOB (GntR family transcriptional regulator n=2 Tax=Tabrizicola alkalilacus TaxID=2305252 RepID=A0A411YXG0_9RHOB) HSP 1 Score: 97.4 bits (241), Expect = 2.160e-23 Identity = 50/68 (73.53%), Postives = 55/68 (80.88%), Query Frame = 1 Query: 1 EKPKVARLCTLGGSKEDRMPQLVEDHREIATAVKDHDPDRAVAAGMLHLSRLDDTIERISATNSTYFD 204 EK KV RLC LG SKEDRMP+LV+DHR IA AVK +DP RAV GMLHLSRLD TIERIS TN+ YF+ Sbjct: 159 EKAKVDRLCMLGLSKEDRMPELVQDHRAIAEAVKANDPVRAVEIGMLHLSRLDKTIERISVTNANYFE 226
BLAST of mRNA_C-australica_Contig_10129.1.1 vs. uniprot
Match: A0A4R6ATR9_9RHOB (GntR family transcriptional regulator n=2 Tax=Rhodobacteraceae TaxID=31989 RepID=A0A4R6ATR9_9RHOB) HSP 1 Score: 97.1 bits (240), Expect = 3.040e-23 Identity = 49/72 (68.06%), Postives = 56/72 (77.78%), Query Frame = 1 Query: 1 EKPKVARLCTLGGSKEDRMPQLVEDHREIATAVKDHDPDRAVAAGMLHLSRLDDTIERISATNSTYFDSEND 216 EK KV RLC LG SKEDRMP+LV DHR IA A+K HD + A+ AGMLHLSRLD TIERISA N++YF+ D Sbjct: 159 EKSKVDRLCMLGLSKEDRMPELVADHRAIADAIKAHDAETAIKAGMLHLSRLDATIERISAINASYFEPSED 230
BLAST of mRNA_C-australica_Contig_10129.1.1 vs. uniprot
Match: A0A1Y5RCY6_9RHOB (Putative HTH-type transcriptional regulator YdfH n=1 Tax=Pacificibacter marinus TaxID=658057 RepID=A0A1Y5RCY6_9RHOB) HSP 1 Score: 96.7 bits (239), Expect = 4.290e-23 Identity = 47/68 (69.12%), Postives = 55/68 (80.88%), Query Frame = 1 Query: 1 EKPKVARLCTLGGSKEDRMPQLVEDHREIATAVKDHDPDRAVAAGMLHLSRLDDTIERISATNSTYFD 204 EK KV RLC LG SKEDRMP+LV DHR IA A+KDHDP++A+ GM HLSRLD TIE ISAT ++YF+ Sbjct: 159 EKSKVDRLCMLGLSKEDRMPELVADHRAIADAIKDHDPEKAIEFGMRHLSRLDKTIESISATKASYFE 226 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10129.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_10129.1.1 >prot_C-australica_Contig_10129.1.1 ID=prot_C-australica_Contig_10129.1.1|Name=mRNA_C-australica_Contig_10129.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=73bp EKPKVARLCTLGGSKEDRMPQLVEDHREIATAVKDHDPDRAVAAGMLHLSback to top mRNA from alignment at C-australica_Contig_10129:11..229+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_10129.1.1 ID=mRNA_C-australica_Contig_10129.1.1|Name=mRNA_C-australica_Contig_10129.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=219bp|location=Sequence derived from alignment at C-australica_Contig_10129:11..229+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_10129:11..229+ >mRNA_C-australica_Contig_10129.1.1 ID=mRNA_C-australica_Contig_10129.1.1|Name=mRNA_C-australica_Contig_10129.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=219bp|location=Sequence derived from alignment at C-australica_Contig_10129:11..229+ (Chrysoparadoxa australica CS_1217)back to top |