mRNA_C-australica_Contig_10115.1.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_10115.1.1 vs. uniprot
Match: UPI001AD9746E (hypothetical protein n=1 Tax=Endozoicomonas sp. G2_2 TaxID=2821092 RepID=UPI001AD9746E) HSP 1 Score: 146 bits (369), Expect = 9.280e-42 Identity = 73/136 (53.68%), Postives = 101/136 (74.26%), Query Frame = 1 Query: 19 DFDFESVLARFETSNTKLWVGLGAVIAALLVVIAFMGWYIAQVEDQKTLLANNRIMYAFPNDDGILVSSRRRPEAMVKRFGRDFLANRYTWDEDTVSRNFEAAARMVMPSRAVALARDLQVLSDRIQRNNISQKIT 426 DFD+ES L +E SNT+L++GL A++ L++ + MG + + Q T LANNRIMYAFP++DG+LVSSRRRP A VKR+ RDF++NR+ +D DTV NF+ AA MV+P +AV +AR L+ L++RIQ +SQK T Sbjct: 5 DFDWESPLVGYERSNTRLFLGLVAMVIILILTVVAMGAALLSMNAQNTKLANNRIMYAFPDEDGVLVSSRRRPPAAVKRYARDFVSNRFNYDADTVEANFKRAANMVVPGKAVGVARQLRDLAERIQNLQLSQKTT 140
BLAST of mRNA_C-australica_Contig_10115.1.1 vs. uniprot
Match: A0A0Q6Z644_9PSED (Uncharacterized protein n=2 Tax=Pseudomonas TaxID=286 RepID=A0A0Q6Z644_9PSED) HSP 1 Score: 67.8 bits (164), Expect = 4.120e-11 Identity = 39/131 (29.77%), Postives = 71/131 (54.20%), Query Frame = 1 Query: 34 SVLARFETSNTKLWVGLGAVIAALLVVIAFMGWYIAQVEDQKTLLANNRIMYAFPNDDGILVSSRRRPEAMVKRFGRDFLANRYTWDEDTVSRNFEAAARMVMPSRAVALARDLQVLSDRIQRNNISQKIT 426 ++L E +++ V L VIAA ++I+F+ + I ++ T L+ +R+MY +PN +G+ VS + P ++ F F+ N Y + D+ N A R++ PS + + L+ L+ R +I Q+IT Sbjct: 15 NILGASELRQSRIMVVLLFVIAAAALIISFLVFQIVELNRANTRLSEDRVMYGYPNAEGVFVSEKAIPRRHIEGFVTWFIQNYYNFTPDSAEENASEALRLMTPSLRIKQEQPLKTLA----RQSIEQEIT 141
BLAST of mRNA_C-australica_Contig_10115.1.1 vs. uniprot
Match: UPI0018E8933D (hypothetical protein n=1 Tax=Pseudomonas TaxID=286 RepID=UPI0018E8933D) HSP 1 Score: 66.6 bits (161), Expect = 1.120e-10 Identity = 40/128 (31.25%), Postives = 67/128 (52.34%), Query Frame = 1 Query: 34 SVLARFETSNTKLWVGLGAVIAALLVVIAFMGWYIAQVEDQKTLLANNRIMYAFPNDDGILVSSRRRPEAMVKRFGRDFLANRYTWDEDTVSRNFEAAARMVMPSRAVALARDLQVLSDRIQRNNISQ 417 ++L E N++L V + V AL+ VI F+ +++D L + R+MY FPN +G+ VSSR P ++ F +LAN Y + ++ N A R++ P V + L+ L+ + NI+Q Sbjct: 15 NILGTSEIRNSRLIVVVMFVSLALVSVIGFLVKQNRELQDANVKLNDERVMYGFPNSEGVFVSSREIPRRHIEGFVSWYLANYYNFTPESAEANANEALRIMSPKLRVKQEQGLRTLARQAAEQNITQ 142
BLAST of mRNA_C-australica_Contig_10115.1.1 vs. uniprot
Match: A0A6I1NQX0_9PSED (Uncharacterized protein n=1 Tax=Pseudomonas sp. MWU12-2323 TaxID=2651296 RepID=A0A6I1NQX0_9PSED) HSP 1 Score: 60.1 bits (144), Expect = 3.110e-8 Identity = 38/131 (29.01%), Postives = 68/131 (51.91%), Query Frame = 1 Query: 34 SVLARFETSNTKLWVGLGAVIAALLVVIAFMGWYIAQVEDQKTLLANNRIMYAFPNDDGILVSSRRRPEAMVKRFGRDFLANRYTWDEDTVSRNFEAAARMVMPSRAVALARDLQVLSDRIQRNNISQKIT 426 +VL E ++L + L VIAA+ V F+ + + L+ +R+MY +PN +G+ VS++ P + ++ F ++ N Y + D+ + N A R++ PS V L+ L+ R +I Q+IT Sbjct: 15 NVLGASEIRQSRLMIALLFVIAAMGAVCVFLVFMTMDLTQANAKLSADRVMYGYPNAEGVFVSAKVIPRSHIEGFVTWYIQNYYNFTPDSATANATEALRIMSPSLRVKQEPSLKTLA----RQSIEQQIT 141
BLAST of mRNA_C-australica_Contig_10115.1.1 vs. uniprot
Match: A0A1L7NMV4_PSEPU (Putative transmembrane protein n=7 Tax=Pseudomonas TaxID=286 RepID=A0A1L7NMV4_PSEPU) HSP 1 Score: 59.3 bits (142), Expect = 6.000e-8 Identity = 36/131 (27.48%), Postives = 67/131 (51.15%), Query Frame = 1 Query: 34 SVLARFETSNTKLWVGLGAVIAALLVVIAFMGWYIAQVEDQKTLLANNRIMYAFPNDDGILVSSRRRPEAMVKRFGRDFLANRYTWDEDTVSRNFEAAARMVMPSRAVALARDLQVLSDRIQRNNISQKIT 426 ++L E +++ V L +I A +I F+ + + ++ L+++R+MY +PN +G+ VS + P V+ F ++ N Y + D+ N A R++ PS V L+ L+ R +I Q+IT Sbjct: 15 NILGASELRQSRIMVVLLFIILAAAAIIGFLIFQVIDLQRANAQLSSDRVMYGYPNAEGVFVSEKVIPRRHVEGFVSWYIQNYYNFTPDSAEANATEALRIMSPSLRVKQEHPLKTLA----RQSIEQEIT 141
BLAST of mRNA_C-australica_Contig_10115.1.1 vs. uniprot
Match: A0A0G4E4J6_PSEFS (Uncharacterized protein n=1 Tax=Pseudomonas fluorescens (strain SBW25) TaxID=216595 RepID=A0A0G4E4J6_PSEFS) HSP 1 Score: 57.0 bits (136), Expect = 4.280e-7 Identity = 41/131 (31.30%), Postives = 64/131 (48.85%), Query Frame = 1 Query: 34 SVLARFETSNTKLWVGLGAVIAALLVVIAFMGWYIAQVEDQKTLLANNRIMYAFPNDDGILVSSRRRPEAMVKRFGRDFLANRYTWDEDTVSRNFEAAARMVMPSRAVALARDLQVLSDRIQRNNISQKIT 426 ++L E KL V L VIAA + +I F+ + L + R+MY FPN DG+ VSS+ P ++ F ++ N Y + ++ N A R++ PS V L+ L+ R +I Q+IT Sbjct: 15 NLLGTSELRQGKLMVVLLFVIAASVAIIGFLVSQNIALTRANVQLNDERVMYGFPNADGVFVSSKVIPRTHIEGFVTWYIQNYYNFMPESAEANATEALRIMSPSLRVKQEAPLRTLA----RQSIEQEIT 141
BLAST of mRNA_C-australica_Contig_10115.1.1 vs. uniprot
Match: UPI001ED9B73A (hypothetical protein n=1 Tax=Pseudomonas aeruginosa TaxID=287 RepID=UPI001ED9B73A) HSP 1 Score: 55.1 bits (131), Expect = 1.150e-6 Identity = 39/118 (33.05%), Postives = 62/118 (52.54%), Query Frame = 1 Query: 76 VGLGAVIAALLVVIAFMGWYIAQVEDQKTLLANNRIMYAFPNDDGILVSSRRRPEAMVKRFGRDFLANRYTWDEDTVSRNFEAAARMVMPSRAVALARD-LQVLSDRIQRNNISQKIT 426 + L A+ A VVIA + ++++ L + RIMY FPN +GI +S R+ P+ + F FL N Y + + N E A RM+ P R AL D L++++++ I+Q T Sbjct: 27 ITLIAISAVFAVVIAVLVGMNRELQETNRRLQSERIMYGFPNSEGIFISERQIPQRHIIAFVAVFLDNYYNFTPLSARTNAEEALRMMSP-RLRALKEDSLKIVANQSVEQQITQVFT 143
BLAST of mRNA_C-australica_Contig_10115.1.1 vs. uniprot
Match: UPI00193F9770 (hypothetical protein n=1 Tax=Pseudomonas arcuscaelestis TaxID=2710591 RepID=UPI00193F9770) HSP 1 Score: 55.5 bits (132), Expect = 1.560e-6 Identity = 35/117 (29.91%), Postives = 58/117 (49.57%), Query Frame = 1 Query: 76 VGLGAVIAALLVVIAFMGWYIAQVEDQKTLLANNRIMYAFPNDDGILVSSRRRPEAMVKRFGRDFLANRYTWDEDTVSRNFEAAARMVMPSRAVALARDLQVLSDRIQRNNISQKIT 426 + L AV A VVIA + +++ L + RIMY FPN +G+ +S R+ P+ + F FL N Y + + S N A RM+ P L++++++ + I+Q T Sbjct: 27 IALIAVAAVFAVVIAVLVNMNVALQETNRKLQSERIMYGFPNAEGVFISERQIPQRHIIAFVSVFLDNYYNFTPQSASTNAGEALRMMSPKLRALSEDSLKIVANQSVQQQITQVFT 143
BLAST of mRNA_C-australica_Contig_10115.1.1 vs. uniprot
Match: A0A2Z1CA53_PSEPU (Uncharacterized protein n=9 Tax=Pseudomonas TaxID=286 RepID=A0A2Z1CA53_PSEPU) HSP 1 Score: 55.1 bits (131), Expect = 2.110e-6 Identity = 39/118 (33.05%), Postives = 62/118 (52.54%), Query Frame = 1 Query: 76 VGLGAVIAALLVVIAFMGWYIAQVEDQKTLLANNRIMYAFPNDDGILVSSRRRPEAMVKRFGRDFLANRYTWDEDTVSRNFEAAARMVMPSRAVALARD-LQVLSDRIQRNNISQKIT 426 + L A+ A VVIA + ++++ L + RIMY FPN +GI +S R+ P+ + F FL N Y + + N E A RM+ P R AL D L++++++ I+Q T Sbjct: 27 ITLIAISAVFAVVIAVLVGMNRELQETNRRLQSERIMYGFPNSEGIFISERQIPQRHIIAFVAVFLDNYYNFTPLSARTNAEEALRMMSP-RLRALKEDSLKIVANQSVEQQITQVFT 143
BLAST of mRNA_C-australica_Contig_10115.1.1 vs. uniprot
Match: UPI001FD9E8E6 (hypothetical protein n=1 Tax=Pseudomonas aeruginosa TaxID=287 RepID=UPI001FD9E8E6) HSP 1 Score: 53.9 bits (128), Expect = 4.160e-6 Identity = 38/115 (33.04%), Postives = 61/115 (53.04%), Query Frame = 1 Query: 76 VGLGAVIAALLVVIAFMGWYIAQVEDQKTLLANNRIMYAFPNDDGILVSSRRRPEAMVKRFGRDFLANRYTWDEDTVSRNFEAAARMVMPSRAVALARD-LQVLSDRIQRNNISQ 417 + L A+ A VVIA + ++++ L + RIMY FPN +GI +S R+ P+ + F FL N Y + + N E A RM+ P R AL D L++++++ I+Q Sbjct: 27 ITLIAISAVFAVVIAVLVGMNRELQETNRRLQSERIMYGFPNSEGIFISERQIPQRHIIAFVAVFLDNYYNFTPLSARTNAEEALRMMSP-RLRALKEDSLKIVANQSVEQQITQ 140 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10115.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_10115.1.1 >prot_C-australica_Contig_10115.1.1 ID=prot_C-australica_Contig_10115.1.1|Name=mRNA_C-australica_Contig_10115.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=142bp MAARSDDFDFESVLARFETSNTKLWVGLGAVIAALLVVIAFMGWYIAQVEback to top mRNA from alignment at C-australica_Contig_10115:271..696+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_10115.1.1 ID=mRNA_C-australica_Contig_10115.1.1|Name=mRNA_C-australica_Contig_10115.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=426bp|location=Sequence derived from alignment at C-australica_Contig_10115:271..696+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_10115:271..696+ >mRNA_C-australica_Contig_10115.1.1 ID=mRNA_C-australica_Contig_10115.1.1|Name=mRNA_C-australica_Contig_10115.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=426bp|location=Sequence derived from alignment at C-australica_Contig_10115:271..696+ (Chrysoparadoxa australica CS_1217)back to top |