mRNA_C-australica_Contig_10101.1.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_10101.1.1 vs. uniprot
Match: A0A4V2Q3X3_9RHOB (Uncharacterized protein YdeI (YjbR/CyaY-like superfamily) n=2 Tax=Shimia isoporae TaxID=647720 RepID=A0A4V2Q3X3_9RHOB) HSP 1 Score: 110 bits (274), Expect = 1.820e-28 Identity = 50/87 (57.47%), Postives = 65/87 (74.71%), Query Frame = 1 Query: 7 MDAEIIDRMEITDAGALWAWLENNAASRDGLWLVTYKREQGPHHVAPNAVRDALIAYGWVDGKRVTLDAARTMQMIAPWQQKIWAAS 267 MDA+ DR+EIT++ LW WLE NA+ R LWLVTYKR QG +V+ + V DAL+A+GW+DG+R+ LD ARTMQ+I P +Q WA S Sbjct: 1 MDADKFDRVEITNSQMLWDWLEANASRRSSLWLVTYKRHQGAAYVSRDEVLDALVAFGWIDGRRMALDDARTMQLIGPRKQNAWAES 87
BLAST of mRNA_C-australica_Contig_10101.1.1 vs. uniprot
Match: A0A0M6YLM2_9RHOB (Uncharacterized protein n=2 Tax=Jannaschia donghaensis TaxID=420998 RepID=A0A0M6YLM2_9RHOB) HSP 1 Score: 98.2 bits (243), Expect = 1.030e-23 Identity = 45/86 (52.33%), Postives = 63/86 (73.26%), Query Frame = 1 Query: 10 DAEIIDRMEITDAGALWAWLENNAASRDGLWLVTYKREQGPHHVAPNAVRDALIAYGWVDGKRVTLDAARTMQMIAPWQQKIWAAS 267 DA+ ++R+EI ALWAWLE + G+WLVT+K +++ +AV DALIAYGW+DG+R+ LDA RTMQ+IAP +Q+ WAA+ Sbjct: 11 DADSVERVEIASEPALWAWLEAHYERDRGVWLVTWKAAHRDRYLSRDAVLDALIAYGWIDGRRMKLDADRTMQLIAPRKQQAWAAT 96
BLAST of mRNA_C-australica_Contig_10101.1.1 vs. uniprot
Match: A0A1H8JL10_9RHOB (Uncharacterized conserved protein YdeI, YjbR/CyaY-like superfamily, DUF1801 family n=1 Tax=Loktanella fryxellensis TaxID=245187 RepID=A0A1H8JL10_9RHOB) HSP 1 Score: 87.8 bits (216), Expect = 9.560e-20 Identity = 39/85 (45.88%), Postives = 57/85 (67.06%), Query Frame = 1 Query: 7 MDAEIIDRMEITDAGALWAWLENNAASRDGLWLVTYKREQGPHHVAPNAVRDALIAYGWVDGKRVTLDAARTMQMIAPWQQKIWA 261 MD E R+E+ + +W+WL+ N A + +WLVT+K +V + V DALIAYGW+DG+R+ LD RTMQ+I+P +Q+ WA Sbjct: 1 MDHEKFARVEVRSSAEVWSWLDVNHAMLESVWLVTWKASHRDRYVGRDDVLDALIAYGWIDGRRLKLDEDRTMQLISPRKQQAWA 85
BLAST of mRNA_C-australica_Contig_10101.1.1 vs. uniprot
Match: A3V6W6_9RHOB (Uncharacterized protein n=2 Tax=Yoonia vestfoldensis TaxID=245188 RepID=A3V6W6_9RHOB) HSP 1 Score: 87.4 bits (215), Expect = 1.470e-19 Identity = 40/89 (44.94%), Postives = 57/89 (64.04%), Query Frame = 1 Query: 1 DIMDAEIIDRMEITDAGALWAWLENNAASRDGLWLVTYKREQGPHHVAPNAVRDALIAYGWVDGKRVTLDAARTMQMIAPWQQKIWAAS 267 + MD E ++EIT+A LW W N A + +WLVT+K + + V DALIAYGW+DG+R+ LD RTMQ+++ +Q+ WAAS Sbjct: 4 EAMDQEKFAKVEITNADELWEWFAKNHAQDESIWLVTWKAVNRDKYTTRDQVLDALIAYGWIDGRRLKLDDDRTMQLLSKRKQQAWAAS 92
BLAST of mRNA_C-australica_Contig_10101.1.1 vs. uniprot
Match: UPI001BC4E7F3 (YdeI/OmpD-associated family protein n=2 Tax=unclassified Jannaschia TaxID=2645469 RepID=UPI001BC4E7F3) HSP 1 Score: 86.3 bits (212), Expect = 3.400e-19 Identity = 39/80 (48.75%), Postives = 57/80 (71.25%), Query Frame = 1 Query: 22 IDRMEITDAGALWAWLENNAASRDGLWLVTYKREQGPHHVAPNAVRDALIAYGWVDGKRVTLDAARTMQMIAPWQQKIWA 261 +DR+E+T ALWAWL + DG+ LVT+K +++ +AV DALIA+GW+DG+R LDA RTMQ+I+P +++ WA Sbjct: 4 MDRIEVTSEAALWAWLGAHHGRADGVLLVTWKATHRDKYLSRDAVLDALIAHGWIDGRRYKLDADRTMQLISPRREQTWA 83
BLAST of mRNA_C-australica_Contig_10101.1.1 vs. uniprot
Match: A0A0Q2XTK9_9RHOB (Uncharacterized protein n=2 Tax=Loktanella sp. 3ANDIMAR09 TaxID=1225657 RepID=A0A0Q2XTK9_9RHOB) HSP 1 Score: 84.0 bits (206), Expect = 2.870e-18 Identity = 40/84 (47.62%), Postives = 56/84 (66.67%), Query Frame = 1 Query: 7 MDAEIIDRMEITDAGALWAWLENNAASRDGLWLVTYKREQGPHHVAPNAVRDALIAYGWVDGKRVTLDAARTMQMIAPWQQKIW 258 MD + ++ I D ALW WL + A D +WLVT+KR GP V+ +AV DAL+A+GW+DG+R+ D RTMQ+I+P Q+ W Sbjct: 1 MDPDRFAQVMIDDDAALWDWLHQHHAQSDSVWLVTWKRGAGPT-VSRDAVLDALLAHGWIDGRRMARDDGRTMQLISPRSQQRW 83
BLAST of mRNA_C-australica_Contig_10101.1.1 vs. uniprot
Match: W8S1I1_9RHOB (Uncharacterized protein n=1 Tax=Roseibacterium elongatum DSM 19469 TaxID=1294273 RepID=W8S1I1_9RHOB) HSP 1 Score: 84.0 bits (206), Expect = 2.930e-18 Identity = 39/85 (45.88%), Postives = 55/85 (64.71%), Query Frame = 1 Query: 13 AEIIDRMEITDAGALWAWLENNAASRDGLWLVTYKREQGPHHVAPNAVRDALIAYGWVDGKRVTLDAARTMQMIAPWQQKIWAAS 267 A ++R+EIT LW WL N +WLVT+K ++V+ V DAL+AYGW+DG+R+ LD R+MQ+IAP +Q +WA S Sbjct: 4 APALERIEITAPSQLWEWLAENHTG-PSVWLVTWKAAHRANYVSREQVLDALVAYGWIDGRRMKLDENRSMQLIAPRKQSVWARS 87
BLAST of mRNA_C-australica_Contig_10101.1.1 vs. uniprot
Match: A0A0C1JFK4_9RHOB (Uncharacterized protein n=1 Tax=Ruegeria sp. ANG-S4 TaxID=1577904 RepID=A0A0C1JFK4_9RHOB) HSP 1 Score: 82.8 bits (203), Expect = 6.770e-18 Identity = 38/82 (46.34%), Postives = 54/82 (65.85%), Query Frame = 1 Query: 22 IDRMEITDAGALWAWLENNAASRDGLWLVTYKREQGPHHVAPNAVRDALIAYGWVDGKRVTLDAARTMQMIAPWQQKIWAAS 267 +D +E+ A LWAWLE N +S D + LVT+K +V+ V DALIAYGW+DG+R +D RT Q+I+P +Q+ W+ S Sbjct: 1 MDHLEVKSAIDLWAWLERNHSSSDSILLVTWKAAHQDKYVSREEVLDALIAYGWIDGRRFAVDDNRTSQLISPRKQQAWSKS 82
BLAST of mRNA_C-australica_Contig_10101.1.1 vs. uniprot
Match: A0A1Y5SXS3_9RHOB (Uncharacterized protein n=1 Tax=Pseudooctadecabacter jejudonensis TaxID=1391910 RepID=A0A1Y5SXS3_9RHOB) HSP 1 Score: 82.0 bits (201), Expect = 1.350e-17 Identity = 37/82 (45.12%), Postives = 54/82 (65.85%), Query Frame = 1 Query: 22 IDRMEITDAGALWAWLENNAASRDGLWLVTYKREQGPHHVAPNAVRDALIAYGWVDGKRVTLDAARTMQMIAPWQQKIWAAS 267 +D +EIT ALW WL+ NAA D L L+T+K+ +V V DAL+A+GW+DG+R +D RT Q+I+P +Q+ W+ S Sbjct: 1 MDDLEITTPDALWDWLDKNAAQPDSLRLITWKKHHPDKYVGREDVLDALLAHGWIDGRRFVVDDDRTAQLISPRKQQAWSQS 82
BLAST of mRNA_C-australica_Contig_10101.1.1 vs. uniprot
Match: A0A2D9Q3P7_9EURY (Uncharacterized protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2D9Q3P7_9EURY) HSP 1 Score: 80.9 bits (198), Expect = 4.680e-17 Identity = 36/84 (42.86%), Postives = 55/84 (65.48%), Query Frame = 1 Query: 10 DAEIIDRMEITDAGALWAWLENNAASRDGLWLVTYKREQGPHHVAPNAVRDALIAYGWVDGKRVTLDAARTMQMIAPWQQKIWA 261 D + +R+E++ + LW WL + +WLVT+K +V+ + V DALIA+GW+DG+R+ LD RTMQ+IAP Q++ WA Sbjct: 3 DLDDRERVEVSSSIQLWDWLLTAHTQHESVWLVTWKAANRDKYVSRDEVLDALIAFGWIDGRRMKLDEERTMQLIAPRQEQAWA 86 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10101.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_10101.1.1 >prot_C-australica_Contig_10101.1.1 ID=prot_C-australica_Contig_10101.1.1|Name=mRNA_C-australica_Contig_10101.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=87bp MDAEIIDRMEITDAGALWAWLENNAASRDGLWLVTYKREQGPHHVAPNAVback to top mRNA from alignment at C-australica_Contig_10101:1..267- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_10101.1.1 ID=mRNA_C-australica_Contig_10101.1.1|Name=mRNA_C-australica_Contig_10101.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=267bp|location=Sequence derived from alignment at C-australica_Contig_10101:1..267- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_10101:1..267- >mRNA_C-australica_Contig_10101.1.1 ID=mRNA_C-australica_Contig_10101.1.1|Name=mRNA_C-australica_Contig_10101.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=261bp|location=Sequence derived from alignment at C-australica_Contig_10101:1..267- (Chrysoparadoxa australica CS_1217)back to top |