mRNA_C-australica_Contig_1008.2.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_1008.2.1 vs. uniprot
Match: A0A6H5KHJ6_9PHAE (Rad51 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHJ6_9PHAE) HSP 1 Score: 148 bits (374), Expect = 1.110e-37 Identity = 103/284 (36.27%), Postives = 155/284 (54.58%), Query Frame = 3 Query: 96 MGVLSIQADETALSLFRRCNTVPFSTGISFLDGA------------GIVAGDVVEVYGPSPSGKSELLLNVVLQTVLPKEMGGRASRAVCVDLDGNLSVLRIEQMLRERVGASACFRA-----------GTMPIPDVALPAEVDPGSPEGRVTSVMLQCMQRIKFVSCQNHLQLIAAMEVLHYESAQEATLVVAIDSLGSLVGKSKLSDS----ALVLQNAALRATARLASERSVVVMAAKPALFANLGWGQGMGNRSGSKMEHWEYMPSAWQKVVSHRVMLQR 866 M LS+Q DETAL LFRR + P TG++F D G+ GDVVE+YGPS SGKSE+L+NVV + V+P +GG AV D DG LS+LR+EQ+L+ ++ + F+ GT+ A P+ + + + V++ C++R++ V +L+AA+EVL +E +VV +D +GS + K++ S A+ +Q +A RL ER VV+ AAK G+ +G+ + EH EY+P WQ+ V+ RV+LQR Sbjct: 1 MMALSVQDDETALELFRRAHHKPLLTGLAFFDEVPAGSGSSKTKDKGVGRGDVVELYGPSGSGKSEVLINVVARCVMPAWLGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGGVGGGGGTIH----ASPSRLQ--QLQSDLEDVLIGCLRRLRVVRPAGLFELLAAIEVLRFELGHRPAVVV-VDGMGSFFWQDKMAQSCGGEAVSMQGIVAKALVRLTMERPVVLFAAKN--------GKDLGDAA---TEHREYLPQIWQRAVTFRVLLQR 266
BLAST of mRNA_C-australica_Contig_1008.2.1 vs. uniprot
Match: D7FPE2_ECTSI (Rad51 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPE2_ECTSI) HSP 1 Score: 119 bits (297), Expect = 3.180e-28 Identity = 74/201 (36.82%), Postives = 110/201 (54.73%), Query Frame = 3 Query: 96 MGVLSIQADETALSLFRRCNTVPFSTGISFLDGA------------GIVAGDVVEVYGPSPSGKSELLLNVVLQTVLPKEMGGRASRAVCVDLDGNLSVLRIEQMLRERVGASACFRA-----GTMPIPDVALPAEVDPGSPEGRVTSVMLQCMQRIKFVSCQNHLQLIAAMEVLHYESAQEATLVVAIDSLGSLVGKSKL 647 M LS+Q DETAL LFRR N P TG++F D G+ GDVVE+YGPS SGKSE+L+NVV + V+P +GG AV D DG LS+LR+EQ+L+ ++ + F+ G + P + + V++ C++R++ V +L+AA+EVL +E +VV +D +GS + K+ Sbjct: 1 MMALSVQDDETALELFRRANHKPLLTGLAFFDEVPAGSGGSKTKDKGVGRGDVVELYGPSGSGKSEVLINVVARCVMPAWLGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGGIGXXXXXXHASSSRPQQLQSDLEDVLIGCLRRLRVVRPAGLFELLAAIEVLRFELGHRPAVVV-VDGMGSFFWQDKV 200
BLAST of mRNA_C-australica_Contig_1008.2.1 vs. uniprot
Match: A0A1Y1IMM9_KLENI (DNA recombination and repair protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IMM9_KLENI) HSP 1 Score: 92.4 bits (228), Expect = 3.400e-17 Identity = 87/341 (25.51%), Postives = 143/341 (41.94%), Query Frame = 3 Query: 111 IQADETALSLFRRCNTVPFSTGISFLDGAGIVAGDVVEVYGPSPSGKSELLLNVVLQTVLPKEM-----GGRASRAVCVDLDGNLSVLRIEQMLRERVGASACFRAGTMPIPDVALPAEVDPGSPEGRVTSVMLQCMQRIKFVSCQNHLQLIAAMEVLHYESAQ-------EATLVVAIDSLGSLVGKSK-----------LSDSALVLQNAALRATARLASERSVVVMAAKPALFANLGW---GQGMGNRSGSKME---------------------HWEYMPSAWQKVVSHRVMLQ--RVPDQGEGQ-----GFTLFNACVVQPHEGRAAEALVMSADP 971 +Q DE+ R P T + F+D A I G+VVE++G S SGK+E+L V +LP E+ GG A+ DLDG +LR+ ++L R+ + + G + D ++ V ++R + + C N L+AA+++L E Q ++ ++ IDS+G+ K L+ S L A + + +++A K A+ A W G G SG + H EYMP+ WQ V+HR++LQ PD G G +F+A +P A+ +++ +P Sbjct: 16 LQPDESMRDFLLRTFVEPLGTSVPFIDSAAIRPGNVVEIFGASGSGKTEILTQAVATCILPSEVDGVGYGGAGGAALFFDLDGRFDILRLVRILESRINEAQVAQGG----------GDAD------ALSQVFTASLRRFRLLHCHNSFHLLAALKMLQPEIRQIVQNHGPDSLHLICIDSIGAFHWLDKGLHLWAGHRDALTQSGL--SKAVVTELKHIMKRHRPLMLATKSAIGAPNRWRPYGSGSTTASGRSPQEGARGSHEDEDPELPQKAVLYHKEYMPAVWQDFVTHRLVLQGPASPDPGGPHQQALLGPPVFSAQWEKPPGSDIAKFVILDVNP 338
BLAST of mRNA_C-australica_Contig_1008.2.1 vs. uniprot
Match: W7U480_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U480_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 3.570e-17 Identity = 98/310 (31.61%), Postives = 138/310 (44.52%), Query Frame = 3 Query: 192 GAGIVAGDVVEVYGPSPSGKSELLLNVVLQTVLPKEMGGRASRAVCVDLDGNLSVLRIEQMLRERV------------------------GASAC-----------FRAGTMP---IPDVALPAEVDPGSPEGRVTSVMLQC-MQRIKFVSCQNHLQLIAAMEVLHY-----ESAQEATLVVAIDSLGSLVGKSKLSDSALVLQNA----ALRATARLASERSVVVMAAKPALFANL----------GWGQGMGNRSGSKMEHWEYMPSAWQKVVSHRVMLQRVPDQGEGQGFTLFNACVV-----QPHE 932 G G++ G V+E+YG S SGK+E+ LN V VLP++ G AV VD+D + V R+ +L R+ G S FRA TM PD A + +P V Q M ++ V C + L+ + +E L Y E A TLVV +DSLGS + K ++S Q+ R R+A ++V V+A KPALFA G +G G +EH EYMP W ++V+HR+ L V + GEG +F+A V QPH+ Sbjct: 68 GGGLLPGTVLELYGASGSGKTEVALNAVCGWVLPRKFSGVGGVAVVVDMDFRVDVRRLRCLLLGRIRKALQLGQGGWDERRQGTKRKWSNGESETSYGQGISGNNGFRATTMGSIGTPDSAGACQGGEDTP-----FVWTQAAMDQVVLVRCVDDLEAFSVLETLKYDLDRGEGAGTPTLVV-LDSLGSCFYERKAAESCHQGQSCFDYMIARCIGRMAQSQAVSVIACKPALFAGQRTVHEGGKEGGKEEGNGRYRYPGLEHKEYMPGQWSRLVTHRLTL--VKEGGEGGREAVFSARAVLLGALQPHQ 369
BLAST of mRNA_C-australica_Contig_1008.2.1 vs. uniprot
Match: A0A445A873_ARAHY (RECA_2 domain-containing protein n=11 Tax=Arachis TaxID=3817 RepID=A0A445A873_ARAHY) HSP 1 Score: 90.9 bits (224), Expect = 6.480e-17 Identity = 77/287 (26.83%), Postives = 127/287 (44.25%), Query Frame = 3 Query: 111 IQADETALSLFRRCNTVPFSTGISFLDGAGIVAGDVVEVYGPSPSGKSELLLNVVLQTVLPKEM-----GGRASRAVCVDLDGNLSVLRIEQMLRERVGASACFRAGTMPIPDVALPAEVDPGSPEGRVTSVMLQCMQRIKFVSCQNHLQLIAAMEVLHYESAQE-----ATLVVAIDSLGSLVGKSKLS---------DSALVLQN---AALRATARLASERSVVVMAAKPALFANL---------GWGQGMGNRSGSKMEHWEYMPSAWQKVVSHRVMLQRVPDQ 878 I DETA + RR + + + + L + G+V+E++GPSPS K+++L+ V + VLPKE GG + +DLD + R QML R+ + D+ CMQR + C N + + ++ LHY +E + ++ IDS+G+ + S L LQ+ A ++ +L ++V+A K +F N G + + RS +++ EYMPS WQ V+HR++L+R DQ Sbjct: 16 IDGDETAHYMLRRISALRSTLLVPPLHRVPLRLGNVIEIFGPSPSAKTQILIQVAINCVLPKEWNGVRYGGFDHSVLFLDLDCRFDISRFSQMLTHRIMEGNAIGDCDKTLYDL---------------------CMQRFLYARCSNSFEFLQTLKSLHYRLKREKDHGVSVQLLLIDSIGAFHWVDRASMFLSLKEHNRKKLFLQSVSEAVVQDIKKLLQVHPMLVIATKSVIFGNTYSTASEEVNGCSRNV-TRSPQHIQYREYMPSVWQSFVTHRILLRRSDDQ 280
BLAST of mRNA_C-australica_Contig_1008.2.1 vs. uniprot
Match: A0A059Q132_9POAL (RECA_2 domain-containing protein n=2 Tax=Saccharinae TaxID=1648026 RepID=A0A059Q132_9POAL) HSP 1 Score: 90.5 bits (223), Expect = 9.210e-17 Identity = 87/279 (31.18%), Postives = 128/279 (45.88%), Query Frame = 3 Query: 111 IQADETALS-LFRRCNTVPFSTGISFLDGAGIVAGDVVEVYGPSPSGKSELLLNVVLQTVLPKE-----MGGRASRAVCVDLDGNLSVLRIEQMLRERVGASACFRAGTMPIPDVALPAEVDPGSPEGRVTSVMLQC----------MQRIKFVSCQNHLQLIAAMEVLHYESAQEAT----LVVAIDSLGSLVGKSKLSDSALVLQNAALRATARLASERSVVVMAAKPALFANLG---WGQGMG-----NRSGSKMEHWEYMPSAWQKVVSHRVMLQ 863 + +ETA++ L R ++ P T L A + G+VVE+ GPS SGKS LLL +Q +LPKE GG + +DLD VLR+ Q+LR R+ A C A + G PE T QC MQR + C N L+ IAA++ + +S +E + V IDS+G+ + S A + L++ ++ +PAL +G+G NR ++ + EYMPS WQ V+HR+ LQ Sbjct: 13 LAVNETAVAFLSRSLSSRPPITLPPPLHRAPLRPGNVVEIAGPSNSGKSHLLLMAAVQCILPKEWEGIYFGGLGRAVMYLDLDCRFDVLRLVQILRNRI-AKGCRSA------------HLRNGDPENDGTKDEFQCSLENTLFSDCMQRFLYARCCNSLEFIAALKTVQSQSRREVSGAGIYFVMIDSIGAFYWIDRGSQPARENKGRTLQSITESVVHELRKLLQLQPALVLVTKAPIYGEGTTTANDFNRGKKELSNREYMPSIWQSFVTHRINLQ 278
BLAST of mRNA_C-australica_Contig_1008.2.1 vs. uniprot
Match: A0A8B7BQY3_PHODC (DNA repair protein XRCC2 homolog isoform X5 n=5 Tax=Phoenix dactylifera TaxID=42345 RepID=A0A8B7BQY3_PHODC) HSP 1 Score: 90.1 bits (222), Expect = 1.010e-16 Identity = 86/300 (28.67%), Postives = 137/300 (45.67%), Query Frame = 3 Query: 111 IQADETALSLFRRCNTVPFSTGISFLDGAGIVAGDVVEVYGPSPSGKSELLLNVVLQTVLPKE-----MGGRASRAVCVDLDGNLSVLRIEQMLRERVGASACFRAGTMPIPDVALPAEVDPGSPEGRVTSV-------MLQCMQRIKFVSCQNHLQLIAAMEVLHYESAQEATLV------VAIDSLGSL-----------VGKSKLSDSALVLQNAA---LRATARLASERSVVVMAAKPALF--------ANLGWGQGMGNRS---------GSKMEHWEYMPSAWQKVVSHRVMLQ 863 I DETA ++ R T + L + G+VVE+ GPSPS KS++LL+ + +LP+E GG + DLD VLR+ Q+L+ R+ A A + D + D +T + L CM+R ++ C + + +AA++ +H+ +E+ + + IDS+G+ +G SK + L LQN A ++ +L + V+V+A K +F A +G+ R G K+ + EYMPSAWQ V+HRV LQ Sbjct: 9 IHGDETAKAMLARVLTERPFLFLPPLHRVPLRVGNVVEIAGPSPSAKSQILLHAAVHCILPEEWKGIRFGGLERMVMYFDLDCRFDVLRLSQILKHRI-MEAYKSANSTYWEDNGEYQKYD----ATEITQMCFCDDELFLACMRRFLYIRCYSSFEFLAALKAMHFHLQRESEALGVGLHFLMIDSIGAFYWIDRACQPMPIGGSKRKN--LSLQNVAEAVVQEICKLLQTQPVLVLATKATIFGAGTSGNDAQRAFGKWCSERKMDSRTLSKEGEKLLYREYMPSAWQSFVTHRVRLQ 301
BLAST of mRNA_C-australica_Contig_1008.2.1 vs. uniprot
Match: A0A6G1CQT2_9ORYZ (RECA_2 domain-containing protein n=2 Tax=Oryza TaxID=4527 RepID=A0A6G1CQT2_9ORYZ) HSP 1 Score: 88.6 bits (218), Expect = 5.630e-16 Identity = 87/301 (28.90%), Postives = 134/301 (44.52%), Query Frame = 3 Query: 111 IQADETALS-LFRRCNTVPFSTGISFLDGAGIVAGDVVEVYGPSPSGKSELLLNVVLQTVLPKE-----MGGRASRAVCVDLDGNLSVLRIEQMLRERVGASACFRAGTMPIPDVALPAEVDPGSPEGRVTSVMLQCMQRIKFVSCQNHLQLIAAMEVLHYESAQEATLV------VAIDSLGSLVGKSKLSDSALVLQNAALRATARLASE------------RSVVVMAAKPALFANLGWGQG-------------------MGNRSGSKMEHWEYMPSAWQKVVSHRVMLQRVPDQGE 884 + DETA + L R + P L A + G+VVE+ GPS SGKS+LLL +Q +LPKE +GG + +DLD VLR+ QMLR R+ A C T + + GS E + S CM+R + C N IAA++ +H +S ++ ++ + IDS+GS + DS + +N + + +E + V+VMA K ++ G+ G G + + E+MPS WQ V+HR+ LQ + + E Sbjct: 13 LSVDETAAAFLSRSLSARPPILLPPPLHRAPLRPGNVVEIAGPSNSGKSQLLLTAAVQCILPKEWKGAYLGGLGKAVMYLDLDCRFDVLRLAQMLRNRI-AECC--GSTNSTNEEFAKDDATNGSAENTLFS---DCMKRFLYARCYNSSDFIAALQNMHSQSQAKSKVLSVGIYFLMIDSIGSFYWMDR--DSQPITENKGRTLSLQSMTEIVVQKLRNFLQLQPVLVMATKAPIYGE-GFMAGNDFPRGTSKQTSEDSTMRCAGQEEEKNISYREFMPSVWQSFVTHRIKLQDLGQEAE 304
BLAST of mRNA_C-australica_Contig_1008.2.1 vs. uniprot
Match: A0A2G9GVI2_9LAMI (DNA repair protein, member of the recA/RAD51 family n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9GVI2_9LAMI) HSP 1 Score: 87.8 bits (216), Expect = 7.120e-16 Identity = 79/291 (27.15%), Postives = 129/291 (44.33%), Query Frame = 3 Query: 111 IQADETAL-SLFRRCNTVPFSTGISFLDGAGIVAGDVVEVYGPSPSGKSELLLNVVLQTVLPKEM-----GGRASRAVCVDLDGNLSVLRIEQMLRERVGASACFRAGTMPIPDVALPAEVDPGSPEGRVTSVMLQCMQRIKFVSCQNHLQLIAAMEVLHYESAQE------ATLVVAIDSLGSLVGKSKLSDSA---------LVLQNAA---LRATARLASERSVVVMAAKPALFANLGWGQGMGNRS--GSKMEHWEYMPSAWQKVVSHRVMLQRVPDQGEGQGFTLF 905 I+ADETA +L R P L + G+VVE+ GPSPS K+ +L+ + +LPKE GG + VDL+ VL + L R+ + R+ G+ + + CM+R + C N + +A ++ LHY +E A ++ IDS+G+ + + S+ L LQ A ++ RL ++V+AAK + A G+ ++ H +YMPS WQ +VSHR++L+ D+ + Q +F Sbjct: 8 IKADETAKEALVRILTERPVVVLPPPLHRLPLRVGNVVEIVGPSPSAKTLILIQAAISCILPKEWKSEQYGGLERAVLFVDLECRFDVLSFSRALERRIIGANGLRSSMK-------------GNEKDYDKELFAACMKRFLYTRCYNSFEFLATLKTLHYRLQKEKEKQGGAVYMLMIDSIGAFYWVDRAAPSSSTGKNNRKSLSLQTVAESVVQEIQRLLLVNPMLVLAAKSTIEAIRNPGKWSDEKAVGARNQSHRDYMPSVWQSLVSHRILLRGSDDERKYQNHPIF 285
BLAST of mRNA_C-australica_Contig_1008.2.1 vs. uniprot
Match: A0A6J0PF77_ELAGV (DNA repair protein XRCC2 homolog isoform X1 n=3 Tax=Cocoseae TaxID=169705 RepID=A0A6J0PF77_ELAGV) HSP 1 Score: 83.6 bits (205), Expect = 3.500e-14 Identity = 83/319 (26.02%), Postives = 140/319 (43.89%), Query Frame = 3 Query: 111 IQADETALSLFRRCNTVPFSTGISFLDGAGIVAGDVVEVYGPSPSGKSELLLNVVLQTVLPKE-----MGGRASRAVCVDLDGNLSVLRIEQMLRERVGASACFRAGTMPIPDVALPAEVDPGSPEGRVT-------SVMLQCMQRIKFVSCQNHLQLIAAMEVLHYESAQEATLV------VAIDSLGSL-----------VGKSKLSDSALV-LQNAALRATARLASERSVVVMAAKPALFA---------------NL----------GWGQGMG---------NRSGSKMEHWEYMPSAWQKVVSHRVMLQRVPD 875 I DETA ++ R T + L + G+VVE+ GPSPS KS++LL+ + +LP+E GG + DLD VLR+ Q+L+ R+ +R+ + + + + T + L CM+R ++ C N + +AA++ +H S +E+ + + IDS+G+ +G SK + +L L A ++ +L + V+V+A K +F NL +G+ +R G K+ + EYMPS+WQ V+HRV LQ + + Sbjct: 9 IHGDETAKAMLSRILTERPFLFLPPLHRVPLRVGNVVEIAGPSPSAKSQILLHAAVNCILPEEWKGIRFGGLGRMVMYFDLDCRFDVLRLSQILKHRI--MEAYRSTN----NTYWKEKGEHQKNDAPTTHMYLCDDELFLDCMRRFLYIRCYNSFEFLAALKAMHSHSQRESEALGVSVHFLMIDSIGAFYWMDRACQPMPIGGSKRKNVSLQSLAEAVVQEICKLLQMQPVLVLATKATIFGAGTSGNDAQRLAHDVNLPILRSTSSTRAFGKWCSEGKMDSRTSSREGEKLMYREYMPSSWQSFVTHRVHLQALDE 321 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1008.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_1008.2.1 >prot_C-australica_Contig_1008.2.1 ID=prot_C-australica_Contig_1008.2.1|Name=mRNA_C-australica_Contig_1008.2.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=306bp MGVLSIQADETALSLFRRCNTVPFSTGISFLDGAGIVAGDVVEVYGPSPSback to top mRNA from alignment at C-australica_Contig_1008:6702..9292+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_1008.2.1 ID=mRNA_C-australica_Contig_1008.2.1|Name=mRNA_C-australica_Contig_1008.2.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2591bp|location=Sequence derived from alignment at C-australica_Contig_1008:6702..9292+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_1008:6702..9292+ >mRNA_C-australica_Contig_1008.2.1 ID=mRNA_C-australica_Contig_1008.2.1|Name=mRNA_C-australica_Contig_1008.2.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=918bp|location=Sequence derived from alignment at C-australica_Contig_1008:6702..9292+ (Chrysoparadoxa australica CS_1217)back to top |