mRNA_C-australica_Contig_10062.1.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_10062.1.1 vs. uniprot
Match: A0A3D2EQT6_9PROT (IS21 family transposase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3D2EQT6_9PROT) HSP 1 Score: 373 bits (958), Expect = 2.250e-125 Identity = 184/230 (80.00%), Postives = 198/230 (86.09%), Query Frame = 1 Query: 1 MKRLPMRKIREALRLRAEGLSGRRVAQSLSLGRATVSEYFRRADVAGLAWPLADDLSDTALEHRLYPHEPGASARAIAQPNWAYVHGELRRKGVTLALFWEEYRAIHPYGYGYSRYCELYTRREGWLSPVMRQRHPAGERLFVDYAGHTVDVV*PETGEVRRAQIFVAALGASNYTYVEASWTQTLPDWIASHVRAFDFFGGVPGMIVSDYLTGGVHKASIYNHEINRTY 690 M+RL MRKIREALRLRA+GLSGR+VAQSLSLGRATVSEYFRRADVA L WPL DDLSD LE RL+PH+PGAS RAI QP+WAYVH ELRRKGVTLAL WEEYR ++P GYGYSRYCELYTR EG LSPVMRQRHPAGERLFVDYAGHTVDV+ P TGEVR AQIFVAALGASNYTYVEASWTQ+LPDWI+SHVRAF F GGVP +V D L V KA ++ INRTY Sbjct: 1 MQRLSMRKIREALRLRADGLSGRQVAQSLSLGRATVSEYFRRADVARLGWPLPDDLSDVDLEQRLFPHQPGASTRAIPQPDWAYVHAELRRKGVTLALLWEEYRGVYPDGYGYSRYCELYTRWEGRLSPVMRQRHPAGERLFVDYAGHTVDVICPGTGEVRTAQIFVAALGASNYTYVEASWTQSLPDWISSHVRAFAFLGGVPAQVVPDNLKAAVIKACFHDPAINRTY 230
BLAST of mRNA_C-australica_Contig_10062.1.1 vs. uniprot
Match: A0A285MB90_9HYPH (HTH IS408-type domain-containing protein n=2 Tax=Cohaesibacter sp. ES.047 TaxID=1798205 RepID=A0A285MB90_9HYPH) HSP 1 Score: 363 bits (931), Expect = 1.070e-124 Identity = 177/229 (77.29%), Postives = 198/229 (86.46%), Query Frame = 1 Query: 1 MKRLPMRKIREALRLRAEGLSGRRVAQSLSLGRATVSEYFRRADVAGLAWPLADDLSDTALEHRLYPHEPGASARAIAQPNWAYVHGELRRKGVTLALFWEEYRAIHPYGYGYSRYCELYTRREGWLSPVMRQRHPAGERLFVDYAGHTVDVV*PETGEVRRAQIFVAALGASNYTYVEASWTQTLPDWIASHVRAFDFFGGVPGMIVSDYLTGGVHKASIYNHEINRT 687 MKRLPMRKIREALRLRAEGLSGRRVAQSLS+GRAT+S+YFRRAD+AGLAWPL DLSD+ LE LYP +PGAS+RA+ QP+WA++H ELRRKGVTLAL W+EYR +HP GYGYS+YC Y+ EG LSPVMRQRHPAGERLFVDYAG TVDV+ P+TGEVR AQIFVA LGA NYTYVEASWTQ+LPDWI+SHVRAFDFFGGVP MIVSD L V KA ++ INRT Sbjct: 1 MKRLPMRKIREALRLRAEGLSGRRVAQSLSIGRATISDYFRRADLAGLAWPLPVDLSDSDLELLLYPSQPGASSRAVPQPDWAHMHAELRRKGVTLALLWQEYREVHPDGYGYSQYCARYSAWEGKLSPVMRQRHPAGERLFVDYAGQTVDVICPQTGEVRTAQIFVATLGAPNYTYVEASWTQSLPDWISSHVRAFDFFGGVPAMIVSDNLKSAVIKACFHDPAINRT 229
BLAST of mRNA_C-australica_Contig_10062.1.1 vs. uniprot
Match: A0A285LZA6_9HYPH (Transposase n=2 Tax=Cohaesibacter sp. ES.047 TaxID=1798205 RepID=A0A285LZA6_9HYPH) HSP 1 Score: 367 bits (942), Expect = 5.910e-123 Identity = 179/230 (77.83%), Postives = 200/230 (86.96%), Query Frame = 1 Query: 1 MKRLPMRKIREALRLRAEGLSGRRVAQSLSLGRATVSEYFRRADVAGLAWPLADDLSDTALEHRLYPHEPGASARAIAQPNWAYVHGELRRKGVTLALFWEEYRAIHPYGYGYSRYCELYTRREGWLSPVMRQRHPAGERLFVDYAGHTVDVV*PETGEVRRAQIFVAALGASNYTYVEASWTQTLPDWIASHVRAFDFFGGVPGMIVSDYLTGGVHKASIYNHEINRTY 690 MKRLPMRKIREALRLRAEGLSGRRVAQSLS+GRAT+S+YFRRAD+AGLAWPL DLSD+ LE LYP +PGAS+RA+ QP+WA++H ELRRKGVTLAL W+EYR +HP GYGYS+YC Y+ EG LSPVMRQRHPAGERLFVDYAG TVDV+ P+TGEVR AQIFVA LGASNYTYVEASWTQ+LPDWI+SHVRAFDFFGGVP MIVSD L V KA ++ INRTY Sbjct: 1 MKRLPMRKIREALRLRAEGLSGRRVAQSLSIGRATISDYFRRADLAGLAWPLPVDLSDSDLELLLYPSQPGASSRAVPQPDWAHMHAELRRKGVTLALLWQEYREVHPDGYGYSQYCARYSAWEGKLSPVMRQRHPAGERLFVDYAGQTVDVICPQTGEVRTAQIFVATLGASNYTYVEASWTQSLPDWISSHVRAFDFFGGVPAMIVSDNLKSAVIKACFHDPAINRTY 230
BLAST of mRNA_C-australica_Contig_10062.1.1 vs. uniprot
Match: A0A5R8Y5E6_9HYPH (IS21 family transposase n=1 Tax=Cohaesibacter sp. CAU 1516 TaxID=2576038 RepID=A0A5R8Y5E6_9HYPH) HSP 1 Score: 336 bits (862), Expect = 7.240e-111 Identity = 162/230 (70.43%), Postives = 183/230 (79.57%), Query Frame = 1 Query: 1 MKRLPMRKIREALRLRAEGLSGRRVAQSLSLGRATVSEYFRRADVAGLAWPLADDLSDTALEHRLYPHEPGASARAIAQPNWAYVHGELRRKGVTLALFWEEYRAIHPYGYGYSRYCELYTRREGWLSPVMRQRHPAGERLFVDYAGHTVDVV*PETGEVRRAQIFVAALGASNYTYVEASWTQTLPDWIASHVRAFDFFGGVPGMIVSDYLTGGVHKASIYNHEINRTY 690 MKRLPMRKI+EALRLRAEGLSG R QSLS+GRAT+SEYFRRAD+AGL WPL DLSD+ LE LYPH+P AS+R I QP+W Y+H ELRRKGVTL L W+EYR +HP GY YS+YC YT EG L PVMRQR+ GE LFVDYAG TVDV P+TGE+R AQIFV+ LGAS+Y Y+EA+WTQ+LPDWI SH RA FFGGVPGMIV D L GV KA Y+ INRTY Sbjct: 1 MKRLPMRKIKEALRLRAEGLSGLRTGQSLSIGRATISEYFRRADLAGLTWPLPSDLSDSDLEQLLYPHQPDASSRPIPQPDWPYMHAELRRKGVTLGLLWQEYREVHPDGYSYSQYCARYTAWEGKLRPVMRQRYVGGETLFVDYAGQTVDVACPKTGEIRTAQIFVSTLGASSYNYIEATWTQSLPDWIGSHTRALAFFGGVPGMIVPDNLKAGVTKACFYDPVINRTY 230
BLAST of mRNA_C-australica_Contig_10062.1.1 vs. uniprot
Match: A0A662DS58_9ACTN (IS21 family transposase n=2 Tax=Bacteria TaxID=2 RepID=A0A662DS58_9ACTN) HSP 1 Score: 332 bits (852), Expect = 2.340e-109 Identity = 164/230 (71.30%), Postives = 183/230 (79.57%), Query Frame = 1 Query: 1 MKRLPMRKIREALRLRAEGLSGRRVAQSLSLGRATVSEYFRRADVAGLAWPLADDLSDTALEHRLYPHEPGASARAIAQPNWAYVHGELRRKGVTLALFWEEYRAIHPYGYGYSRYCELYTRREGWLSPVMRQRHPAGERLFVDYAGHTVDVV*PETGEVRRAQIFVAALGASNYTYVEASWTQTLPDWIASHVRAFDFFGGVPGMIVSDYLTGGVHKASIYNHEINRTY 690 MKR PMRKIREALRLRA G+S R +A SLS+GR T+ EY RA+ AGL WPL DLSD+ LE L+P + G AI QP+WAYVH ELR+KGVTL+L WEEYR +H GYGYSRYCELYTR EG LSPVMRQRHPAGERLFVDYAG T DV P+TGEVR AQ+FVA LGASNYTYVEASWTQ+LPDWI+SHVRAF+FFGGVP +V D L GV KA Y+ INRTY Sbjct: 1 MKRAPMRKIREALRLRASGMSTREMASSLSVGRTTLREYLSRANRAGLDWPLPVDLSDSDLEAHLFPQKKGDDFGAIPQPDWAYVHAELRQKGVTLSLLWEEYRTVHSDGYGYSRYCELYTRWEGKLSPVMRQRHPAGERLFVDYAGATFDVACPKTGEVRTAQLFVATLGASNYTYVEASWTQSLPDWISSHVRAFEFFGGVPAQVVCDNLKAGVTKACFYDPAINRTY 230
BLAST of mRNA_C-australica_Contig_10062.1.1 vs. uniprot
Match: A0A1H1F7G0_9HYPH (Transposase n=2 Tax=Pseudovibrio sp. Tun.PSC04-5.I4 TaxID=1798213 RepID=A0A1H1F7G0_9HYPH) HSP 1 Score: 330 bits (847), Expect = 1.150e-108 Identity = 161/225 (71.56%), Postives = 181/225 (80.44%), Query Frame = 1 Query: 16 MRKIREALRLRAEGLSGRRVAQSLSLGRATVSEYFRRADVAGLAWPLADDLSDTALEHRLYPHEPGASARAIAQPNWAYVHGELRRKGVTLALFWEEYRAIHPYGYGYSRYCELYTRREGWLSPVMRQRHPAGERLFVDYAGHTVDVV*PETGEVRRAQIFVAALGASNYTYVEASWTQTLPDWIASHVRAFDFFGGVPGMIVSDYLTGGVHKASIYNHEINRTY 690 MRKIREALRLR +G SGR+VA+SLSLGRAT+SEYFRRAD GL WPL DLSD LE RL+ H P A+ P+W YVH ELRRKGVTL L WEEYRA+HP G+GYSRYCELYTR G LSPVMRQ HPAGERLF+DYAG TVDVV P++G+VR AQIFVA LGAS+YTYVEASWTQ+LPDWI+S+VRAF+FFGGV +V D L GV KA Y+ INRTY Sbjct: 1 MRKIREALRLRGDGFSGRQVARSLSLGRATISEYFRRADQEGLRWPLPADLSDVELERRLFSHSPSEVRLAVPHPDWVYVHAELRRKGVTLLLLWEEYRAVHPDGFGYSRYCELYTRWSGKLSPVMRQCHPAGERLFLDYAGQTVDVVCPKSGKVRTAQIFVATLGASSYTYVEASWTQSLPDWISSNVRAFEFFGGVAAQLVPDNLKAGVTKACFYDPAINRTY 225
BLAST of mRNA_C-australica_Contig_10062.1.1 vs. uniprot
Match: A0A2G2DDS0_9HYPH (IS21 family transposase n=1 Tax=Hoeflea sp. TaxID=1940281 RepID=A0A2G2DDS0_9HYPH) HSP 1 Score: 325 bits (834), Expect = 1.210e-106 Identity = 160/230 (69.57%), Postives = 183/230 (79.57%), Query Frame = 1 Query: 1 MKRLPMRKIREALRLRAEGLSGRRVAQSLSLGRATVSEYFRRADVAGLAWPLADDLSDTALEHRLYPHEPGASARAIAQPNWAYVHGELRRKGVTLALFWEEYRAIHPYGYGYSRYCELYTRREGWLSPVMRQRHPAGERLFVDYAGHTVDVV*PETGEVRRAQIFVAALGASNYTYVEASWTQTLPDWIASHVRAFDFFGGVPGMIVSDYLTGGVHKASIYNHEINRTY 690 MKRLPMRKIR+ LRL AEGLS R++A SL++GR T+ Y RA GL+WPL ++SDT LEHRL+ R AQP+WA +H ELRRKGVTL+L WEEYRA HP GYGYSR+CELYTR EG LSPVMRQRHPAGERLFVDYAGHT+DV+ P+TGEVR AQ+FVAALGAS+YT+ EA+WTQ+LPDWIASHVRAF FFGGV IVSD L GV KA Y+ INRTY Sbjct: 1 MKRLPMRKIRDVLRLSAEGLSTRQIAASLAIGRTTLRGYIDRATELGLSWPLPPEMSDTDLEHRLFDRGYHNPQRIAAQPDWACIHRELRRKGVTLSLLWEEYRADHPEGYGYSRFCELYTRWEGKLSPVMRQRHPAGERLFVDYAGHTIDVIDPKTGEVRTAQLFVAALGASSYTFAEATWTQSLPDWIASHVRAFGFFGGVTAQIVSDNLKAGVTKACFYDPAINRTY 230
BLAST of mRNA_C-australica_Contig_10062.1.1 vs. uniprot
Match: A0A2W7PL57_9RHOB (Transposase n=1 Tax=Roseinatronobacter thiooxidans TaxID=121821 RepID=A0A2W7PL57_9RHOB) HSP 1 Score: 320 bits (819), Expect = 2.220e-104 Identity = 158/230 (68.70%), Postives = 181/230 (78.70%), Query Frame = 1 Query: 1 MKRLPMRKIREALRLRAEGLSGRRVAQSLSLGRATVSEYFRRADVAGLAWPLADDLSDTALEHRLYPHEPGASARAIAQPNWAYVHGELRRKGVTLALFWEEYRAIHPYGYGYSRYCELYTRREGWLSPVMRQRHPAGERLFVDYAGHTVDVV*PETGEVRRAQIFVAALGASNYTYVEASWTQTLPDWIASHVRAFDFFGGVPGMIVSDYLTGGVHKASIYNHEINRTY 690 MKRLPMRKIR+ LRL AEGLS R++A SL++GR T+ Y RA GLAWPL D+SDT LE L+ + R AQP+W Y+H ELRRKG+TL+L WEEYRA HP GYGYSR+CELYTR EG LSPVMRQRHPAGERLFVDYAG T+DV+ P+TGEVR AQ+FVA LGASNYT+VEA+WTQ+LPDWIASHVRA +FFGGV IVSD L GV KA Y+ INRTY Sbjct: 1 MKRLPMRKIRDVLRLSAEGLSTRQIAASLAIGRTTLRGYLDRATELGLAWPLPADMSDTDLERCLFHRAYQNTQRIEAQPDWPYIHRELRRKGMTLSLLWEEYRANHPDGYGYSRFCELYTRWEGKLSPVMRQRHPAGERLFVDYAGRTIDVIDPQTGEVRTAQVFVAVLGASNYTFVEATWTQSLPDWIASHVRALNFFGGVTAQIVSDNLKAGVTKACFYDPAINRTY 230
BLAST of mRNA_C-australica_Contig_10062.1.1 vs. uniprot
Match: UPI0013E92F0A (IS21 family transposase n=2 Tax=unclassified Leisingera TaxID=2614906 RepID=UPI0013E92F0A) HSP 1 Score: 310 bits (794), Expect = 2.550e-104 Identity = 148/224 (66.07%), Postives = 178/224 (79.46%), Query Frame = 1 Query: 16 MRKIREALRLRAEGLSGRRVAQSLSLGRATVSEYFRRADVAGLAWPLADDLSDTALEHRLYPHEPGASARAIAQPNWAYVHGELRRKGVTLALFWEEYRAIHPYGYGYSRYCELYTRREGWLSPVMRQRHPAGERLFVDYAGHTVDVV*PETGEVRRAQIFVAALGASNYTYVEASWTQTLPDWIASHVRAFDFFGGVPGMIVSDYLTGGVHKASIYNHEINRT 687 MRKIR+ LRL AEGLS R++A SL++GR T+ Y RA AGL+WPL ++SD+ LE LYP +AR +QP+W+YVH +LRRKGVTL+L WEEYRA HP GYGYSR+C+LY+ EG LSPVMRQRHPAGERLFVDYAG T+DV+ PETGEVR AQ+FVA LGASN+T+ EA+WTQTLPDWI+SHVRAF FFGGV +V D L GV+KA Y+ E+NRT Sbjct: 1 MRKIRDVLRLSAEGLSTRQMASSLAIGRTTLQGYLDRAHEAGLSWPLPAEMSDSELERHLYPRTAREAARRASQPDWSYVHLQLRRKGVTLSLLWEEYRAAHPDGYGYSRFCDLYSCWEGKLSPVMRQRHPAGERLFVDYAGATIDVIDPETGEVRAAQLFVATLGASNFTFAEATWTQTLPDWISSHVRAFSFFGGVTAQVVPDNLRAGVNKARFYDPELNRT 224
BLAST of mRNA_C-australica_Contig_10062.1.1 vs. uniprot
Match: UPI001652F7EC (hypothetical protein n=1 Tax=Roseobacter litoralis TaxID=42443 RepID=UPI001652F7EC) HSP 1 Score: 308 bits (788), Expect = 5.070e-104 Identity = 151/178 (84.83%), Postives = 161/178 (90.45%), Query Frame = 1 Query: 16 MRKIREALRLRAEGLSGRRVAQSLSLGRATVSEYFRRADVAGLAWPLADDLSDTALEHRLYPHEPGASARAIAQPNWAYVHGELRRKGVTLALFWEEYRAIHPYGYGYSRYCELYTRREGWLSPVMRQRHPAGERLFVDYAGHTVDVV*PETGEVRRAQIFVAALGASNYTYVEASWT 549 MRKIREALRLRA+GLSGR+VAQSLSLGRATVSEYFRRADVAGLAWPL DDLSD LE RL+PH+PG SARAI QP+W+YVH ELRRKGVTLAL WEEYR ++P GYGYSRYCELYTR EG LSPVMRQRHPAGERLFVD AGHTVDV+ PETGEVR AQIFVA LGASN TYVEA+WT Sbjct: 1 MRKIREALRLRADGLSGRQVAQSLSLGRATVSEYFRRADVAGLAWPLPDDLSDIDLEQRLFPHQPGGSARAIPQPDWSYVHAELRRKGVTLALLWEEYRGVYPDGYGYSRYCELYTRWEGRLSPVMRQRHPAGERLFVDDAGHTVDVICPETGEVRTAQIFVATLGASNLTYVEATWT 178 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10062.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_10062.1.1 >prot_C-australica_Contig_10062.1.1 ID=prot_C-australica_Contig_10062.1.1|Name=mRNA_C-australica_Contig_10062.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=154bp MKRLPMRKIREALRLRAEGLSGRRVAQSLSLGRATVSEYFRRADVAGLAWback to top mRNA from alignment at C-australica_Contig_10062:1..690- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_10062.1.1 ID=mRNA_C-australica_Contig_10062.1.1|Name=mRNA_C-australica_Contig_10062.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=690bp|location=Sequence derived from alignment at C-australica_Contig_10062:1..690- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_10062:1..690- >mRNA_C-australica_Contig_10062.1.1 ID=mRNA_C-australica_Contig_10062.1.1|Name=mRNA_C-australica_Contig_10062.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=462bp|location=Sequence derived from alignment at C-australica_Contig_10062:1..690- (Chrysoparadoxa australica CS_1217)back to top |