mRNA_C-australica_Contig_1003.6.3 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_1003.6.3 vs. uniprot
Match: A0A7S3XTG9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XTG9_HETAK) HSP 1 Score: 153 bits (386), Expect = 1.040e-40 Identity = 82/192 (42.71%), Postives = 119/192 (61.98%), Query Frame = 1 Query: 607 SEYRSKTVAEITNDWNKQLREDAATFTTEALKVAAWDTQLRDNQKAITELADQVQRMLLVHQELENKVTAVSTSQTEMDQALQTLETQVDGLFKKNQSRVPDDADVEREQTYQLAIDLDQQLTTMLGTLRDVVKGLNESFSAQSDSSSTVVKIIKVLNAHHHSLSWLETSAKKLQVEVGSASREMRATAGSG 1182 +EY++KTV EI DW +L +D A F +A +VAAWD LR++Q+A+ +D+V R+LL EL+ + V Q E++ L LE QVD F++ +R PDDAD+ERE+ YQLA+ DQ+L +L LR + +N F Q D ++ V KI+++LNAHH SL+WLE A L E+ R M+ +G Sbjct: 7 AEYQAKTVDEILGDWGVRLEQDVAAFARQAARVAAWDQALREHQEALGSASDRVHRLLLGQAELDRTLDTVQAYQGELEATLGALEAQVDEQFRRCAARAPDDADLERERAYQLAVATDQRLGGVLDGLRALADDINAGFDRQVDDANPVSKILRILNAHHQSLAWLERQASGLDRELAQVGRRMQRLEATG 198
BLAST of mRNA_C-australica_Contig_1003.6.3 vs. uniprot
Match: A0A484E958_BRELC (Nsp1_C domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E958_BRELC) HSP 1 Score: 156 bits (395), Expect = 1.220e-39 Identity = 80/196 (40.82%), Postives = 135/196 (68.88%), Query Frame = 1 Query: 574 SAEVTSLNTLISEYRSKTVAEITNDWNKQLREDAATFTTEALKVAAWDTQLRDNQKAITELADQVQRMLLVHQELENKVTAVSTSQTEMDQALQTLETQVDGLFKKNQSRVPDDADVEREQTYQLAIDLDQQLTTMLGTLRDVVKGLNESFSAQSDSSSTVVKIIKVLNAHHHSLSWLETSAKKLQVEVGSASREM 1161 +A +T+++ +EY +TV +I N W++QL +A TFTTEA+KV+ WD+ + D+Q+ + +LA V+R+ + EL++ + + Q E+ L+ LE VD +++ +Q ++P AD+EREQT QL++DLD QL +M TL++ V+ LN++ + +D S+ +V+I+KVLN HHHSL W+E SA ++ E+G SR++ Sbjct: 235 TAPMTAVDMPPAEYMGRTVEDIINSWSEQLERNADTFTTEAVKVSQWDSDVLDSQRKLGDLAGDVRRIQVAQNELDSNLDTIFAYQMELKSTLEQLEKSVDKMYE-SQDQMPVAADIEREQTLQLSVDLDDQLNSMTTTLKETVETLNQAHNDVADESNPMVQIMKVLNVHHHSLQWIEGSADRITSEIGQLSRKL 429
BLAST of mRNA_C-australica_Contig_1003.6.3 vs. uniprot
Match: A0A225WLQ3_9STRA (Nuclear pore glycoprotein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WLQ3_9STRA) HSP 1 Score: 150 bits (379), Expect = 3.080e-37 Identity = 76/197 (38.58%), Postives = 133/197 (67.51%), Query Frame = 1 Query: 574 SAEVTSLNTLISEYRSKTVAEITNDWNKQLREDAATFTTEALKVAAWDTQLRDNQKAITELADQVQRMLLVHQELENKVTAVSTSQTEMDQALQTLETQVDGLFKKNQSRVPDDADVEREQTYQLAIDLDQQLTTMLGTLRDVVKGLNESFSAQSDSSSTVVKIIKVLNAHHHSLSWLETSAKKLQVEVGSASREMR 1164 +A VT + +EY +T+ +I N W++QL +A TFTTEA+KV+ WD+ L D+Q+ + ++A V+R+ + EL++ + + Q E+ L+ LE VD +++ +Q ++P AD+EREQT QL++D+D QL +M TL++ V+ LN++ +D ++ +V+I+KVLN HH+SL W+E SA ++ ++G SR+++ Sbjct: 251 TAPVTETDKPPAEYMGRTIEDIINTWSEQLERNADTFTTEAVKVSKWDSDLMDSQRKLGDIAGDVRRIQVAQNELDSNLDTIFAYQMELKSTLEQLEKSVDKMYE-SQDQMPVAADIEREQTLQLSVDIDDQLNSMTTTLKETVEKLNKAQDDVADDNNPMVQIMKVLNVHHNSLQWIEGSASRINSDIGQLSRKLQ 446
BLAST of mRNA_C-australica_Contig_1003.6.3 vs. uniprot
Match: A0A0P1AZU3_PLAHL (Nuclear porin n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AZU3_PLAHL) HSP 1 Score: 149 bits (377), Expect = 5.920e-37 Identity = 75/189 (39.68%), Postives = 130/189 (68.78%), Query Frame = 1 Query: 607 SEYRSKTVAEITNDWNKQLREDAATFTTEALKVAAWDTQLRDNQKAITELADQVQRMLLVHQELENKVTAVSTSQTEMDQALQTLETQVDGLFKKNQSRVPDDADVEREQTYQLAIDLDQQLTTMLGTLRDVVKGLNESFSAQSDSSSTVVKIIKVLNAHHHSLSWLETSAKKLQVEVGSASREMRATA 1173 +EY +T+ +I N W++QL + TFTTEA+KV+ WD+ L D+Q+ + +LA V+R+ + EL+ + + Q E+ L+ LE VD +++ +Q ++P AD+EREQT QL++D+D QL +M TL+++V+ LN++ +D S+ +V+I+KVLN HH+SL W+E+SA ++ E+G SR+++ ++ Sbjct: 262 AEYMGRTIEDIINAWSEQLERNTDTFTTEAVKVSKWDSDLMDSQRKLGDLAIDVRRIQVAQNELDTNLDTIFAYQMELKSTLEQLEHSVDKMYE-SQDQMPVAADIEREQTLQLSVDIDGQLNSMTTTLKEIVERLNKAQDEVADESNPIVQIMKVLNVHHNSLQWIESSADQINNEIGQLSRKLQESS 449
BLAST of mRNA_C-australica_Contig_1003.6.3 vs. uniprot
Match: A0A7S1UKA1_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UKA1_9STRA) HSP 1 Score: 145 bits (365), Expect = 1.550e-36 Identity = 81/184 (44.02%), Postives = 108/184 (58.70%), Query Frame = 1 Query: 613 YRSKTVAEITNDWNKQLREDAATFTTEALKVAAWDTQLRDNQKAITELADQVQRMLLVHQELENKVTAVSTSQTEMDQALQTLETQVDGLFKKNQSRVPDDADVEREQTYQLAIDLDQQLTTMLGTLRDVVKGLNESFSAQSD----SSSTVVKIIKVLNAHHHSLSWLETSAKKLQVEVGSAS 1152 Y ++T+ E+ N WN+ L EDAA F A +V WD QLR NQ AITE+A+ VQR+ L +L+ V VS Q EM L+ LE +VD +F + SRVP+DAD+EREQTY+LA D+ Q+L M GTL V + LN F + ++K LN HH+ L WLE ++L E S Sbjct: 113 YVNQTIEEVVNGWNEALEEDAAQFLMLAQRVGEWDAQLRANQAAITEVAESVQRLALAQSDLDRTVDTVSAMQREMTTELEKLEVKVDQVFSQKSSRVPEDADLEREQTYKLASDVQQRLMQMHGTLHGVTQTLNRDFERSTGVGPAGMGNASLVLKTLNNHHNLLEWLERECRRLDAETSKIS 296
BLAST of mRNA_C-australica_Contig_1003.6.3 vs. uniprot
Match: A0A3R7IKR3_9STRA (Nsp1_C domain-containing protein n=5 Tax=Peronosporaceae TaxID=4777 RepID=A0A3R7IKR3_9STRA) HSP 1 Score: 141 bits (355), Expect = 1.880e-36 Identity = 71/184 (38.59%), Postives = 124/184 (67.39%), Query Frame = 1 Query: 622 KTVAEITNDWNKQLREDAATFTTEALKVAAWDTQLRDNQKAITELADQVQRMLLVHQELENKVTAVSTSQTEMDQALQTLETQVDGLFKKNQSRVPDDADVEREQTYQLAIDLDQQLTTMLGTLRDVVKGLNESFSAQSDSSSTVVKIIKVLNAHHHSLSWLETSAKKLQVEVGSASREMRATA 1173 +T+ +I N W++QL +A TFTTEA+KV+ WD+ L D+Q+ + ++A V+R+ + EL+ + + Q E+ L+ LE VD +++ +Q ++P AD+EREQT QL++D+D QL M TL++ V LN++ +D ++ +V+I+KVLN HH+SL W+E+SA ++ ++ SR+++ T+ Sbjct: 3 RTIEDIINAWSEQLERNADTFTTEAVKVSKWDSDLMDSQRKLGDIAGDVRRIQVAQNELDTNLDTIFAYQMELKSTLEQLEKSVDKMYE-SQDQMPVAADIEREQTLQLSVDIDDQLNQMTTTLKETVDKLNKAQDDVADDNNPMVQIMKVLNVHHNSLQWIESSADRINSDISQLSRKLQDTS 185
BLAST of mRNA_C-australica_Contig_1003.6.3 vs. uniprot
Match: A0A2P4XQD6_9STRA (Nuclear pore glycoprotein n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XQD6_9STRA) HSP 1 Score: 147 bits (371), Expect = 7.330e-36 Identity = 76/197 (38.58%), Postives = 131/197 (66.50%), Query Frame = 1 Query: 574 SAEVTSLNTLISEYRSKTVAEITNDWNKQLREDAATFTTEALKVAAWDTQLRDNQKAITELADQVQRMLLVHQELENKVTAVSTSQTEMDQALQTLETQVDGLFKKNQSRVPDDADVEREQTYQLAIDLDQQLTTMLGTLRDVVKGLNESFSAQSDSSSTVVKIIKVLNAHHHSLSWLETSAKKLQVEVGSASREMR 1164 +A VT + +EY KT+ +I N W++QL +A TFTTEA+KV+ WD+ L D+Q+ + ++A V+R+ + EL+ + + Q E+ L+ LE VD +++ +Q ++P AD+EREQT QL++D+D QL +M TL++ V+ LN++ +D ++ +V+I+KVLN HH+SL W+E SA ++ ++ SR+++ Sbjct: 287 TAPVTETDKPPAEYMGKTIEDIINAWSEQLERNADTFTTEAVKVSKWDSDLMDSQRKLGDIAGDVRRIQVAQNELDTNLDTIFAYQMELKSTLEQLEKSVDKMYE-SQDQMPVAADIEREQTLQLSVDIDDQLNSMTTTLKETVEKLNKAQDDVADDNNPLVQIMKVLNVHHNSLQWIEGSASRINSDIVQLSRKLQ 482
BLAST of mRNA_C-australica_Contig_1003.6.3 vs. uniprot
Match: K3WPB9_GLOUD (Nsp1_C domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WPB9_GLOUD) HSP 1 Score: 138 bits (348), Expect = 1.470e-35 Identity = 68/175 (38.86%), Postives = 122/175 (69.71%), Query Frame = 1 Query: 649 WNKQLREDAATFTTEALKVAAWDTQLRDNQKAITELADQVQRMLLVHQELENKVTAVSTSQTEMDQALQTLETQVDGLFKKNQSRVPDDADVEREQTYQLAIDLDQQLTTMLGTLRDVVKGLNESFSAQSDSSSTVVKIIKVLNAHHHSLSWLETSAKKLQVEVGSASREMRATA 1173 W++QL ++A TFT EA+KV+ WD++L ++QK + ++A V+R+ + +EL+ + + Q E+ L+ LE VD +++ Q +P AD+EREQT QL++D+D+QL +M TL++ V+ LN++ + +D S+ +V+I+KVLN HH+SL W+E++A K+ EV +R+++ ++ Sbjct: 2 WSEQLEKNADTFTNEAVKVSMWDSELMESQKKLGDIASDVRRIQVAQKELDTNLDTIFAYQMELKSTLEQLENSVDKMYEA-QDHMPIAADIEREQTLQLSVDIDEQLNSMSTTLKETVEKLNKAQNEAADESNPIVQIMKVLNVHHNSLQWVESNANKISKEVSQLTRKLQESS 175
BLAST of mRNA_C-australica_Contig_1003.6.3 vs. uniprot
Match: H3GWZ9_PHYRM (Nsp1_C domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GWZ9_PHYRM) HSP 1 Score: 145 bits (366), Expect = 2.450e-35 Identity = 76/197 (38.58%), Postives = 129/197 (65.48%), Query Frame = 1 Query: 574 SAEVTSLNTLISEYRSKTVAEITNDWNKQLREDAATFTTEALKVAAWDTQLRDNQKAITELADQVQRMLLVHQELENKVTAVSTSQTEMDQALQTLETQVDGLFKKNQSRVPDDADVEREQTYQLAIDLDQQLTTMLGTLRDVVKGLNESFSAQSDSSSTVVKIIKVLNAHHHSLSWLETSAKKLQVEVGSASREMR 1164 +A T + +EY KT+ +I N W++QL +A TFTTEA+KV+ WD+ L D+Q+ + +A V+R+ + EL+ + + Q E+ L+ LE VD +++ +Q ++P AD+EREQT QL++D+D QL +M TL++ V+ LN++ +D ++ +V+I+KVLN HH+SL W+E SA ++ E+ SR+++ Sbjct: 260 AAPATETDKPPAEYMGKTIEDIINAWSEQLERNADTFTTEAVKVSKWDSDLMDSQRKLGGIAGDVRRIQVAQNELDTNLDTIFAYQMELKSTLEQLEKSVDKMYE-SQDQMPVAADIEREQTLQLSVDIDDQLNSMTTTLKETVEKLNKAQDDVADENNPMVQIMKVLNVHHNSLQWIEGSAGRINGEISQLSRKLQ 455
BLAST of mRNA_C-australica_Contig_1003.6.3 vs. uniprot
Match: A0A6A3WIJ5_9STRA (Nsp1_C domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3WIJ5_9STRA) HSP 1 Score: 145 bits (365), Expect = 3.130e-35 Identity = 74/186 (39.78%), Postives = 126/186 (67.74%), Query Frame = 1 Query: 607 SEYRSKTVAEITNDWNKQLREDAATFTTEALKVAAWDTQLRDNQKAITELADQVQRMLLVHQELENKVTAVSTSQTEMDQALQTLETQVDGLFKKNQSRVPDDADVEREQTYQLAIDLDQQLTTMLGTLRDVVKGLNESFSAQSDSSSTVVKIIKVLNAHHHSLSWLETSAKKLQVEVGSASREMR 1164 +EY +T+ +I N W++QL +A TFTTEA+KV+ WD+ L D+Q+ + ++A V+R+ + EL+ + + Q E+ L+ LE VD +++ +Q ++P AD+EREQT QL++D+D QL +M +L++ V+ LN++ +D ++ +V+I+KVLN HH+SL W+E SA KL E+ SR+++ Sbjct: 266 AEYMGRTIEDIINAWSEQLERNADTFTTEAVKVSKWDSDLMDSQRQLGDIAGDVRRIQVAQNELDTNLDTIFAYQMELKSTLEQLEKSVDKMYE-SQDQMPVAADIEREQTLQLSVDIDDQLNSMTTSLKETVEKLNKAQDDAADENNPMVQIMKVLNVHHNSLQWIEGSAGKLNGEIALLSRKLQ 450 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1003.6.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_1003.6.3 >prot_C-australica_Contig_1003.6.3 ID=prot_C-australica_Contig_1003.6.3|Name=mRNA_C-australica_Contig_1003.6.3|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=344bp MQTPSKTLSMDAGTPAPAPATTSAPAPAGGFSFGGTPAPAPAATSAPAPAback to top mRNA from alignment at C-australica_Contig_1003:7523..9417- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_1003.6.3 ID=mRNA_C-australica_Contig_1003.6.3|Name=mRNA_C-australica_Contig_1003.6.3|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1895bp|location=Sequence derived from alignment at C-australica_Contig_1003:7523..9417- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_1003:7523..9417- >mRNA_C-australica_Contig_1003.6.3 ID=mRNA_C-australica_Contig_1003.6.3|Name=mRNA_C-australica_Contig_1003.6.3|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1032bp|location=Sequence derived from alignment at C-australica_Contig_1003:7523..9417- (Chrysoparadoxa australica CS_1217)back to top |