mRNA_C-australica_Contig_1002.3.2 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_1002.3.2 vs. uniprot
Match: A0A6H5KFP0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP0_9PHAE) HSP 1 Score: 154 bits (389), Expect = 1.100e-37 Identity = 74/167 (44.31%), Postives = 99/167 (59.28%), Query Frame = 1 Query: 502 LPLEVLHGVAAFLRPEEVLSLTQTVKSLSDACNGDEVWRELWKLKYGPMWDSAYSKDAKNRWGLEHWDPCKHKPKQGWKLLFAQFECMWLDILAAGCNSEEGPCLVGIEGGLYDIAKFVNKHPGSPDTLLDNAGRDATQLFHDVGHSQEARKLMAGYLVLEPAFKGC 1002 L + L FL P ++L L Q + +A + VWRE+W ++G +W+S K A RW L W+P QGW+ F +FE WL+ LAAG N E CLVG+ G LYDI F+++HPGSP+TL++NAG DA++ F DVGHS +AR LM L P GC Sbjct: 337 LNADALQRALTFLEPRDLLELAQASRGAREAADSQLVWREVWWARFGAIWESEICKKAARRWHLHDWNPKSSAVTQGWREFFFEFEATWLEWLAAGQNFESS-CLVGVHGRLYDITDFMHRHPGSPETLMENAGADASEFFEDVGHSLDARGLMKSLDSLAP---GC 499
BLAST of mRNA_C-australica_Contig_1002.3.2 vs. uniprot
Match: A0A7S3Y614_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y614_HETAK) HSP 1 Score: 144 bits (363), Expect = 2.040e-35 Identity = 69/152 (45.39%), Postives = 102/152 (67.11%), Query Frame = 1 Query: 526 VAAFLRPEEVLSLTQTVKSLSDACNGDEVWRELWKLKYGPMWDSAYSKDAKNRWGLEHWDPCKHKP-KQGWKLLFAQFECMWLDILAAGCNSEEGPCLVGIEGGLYDIAKFVNKHPGSPDTLLDNAGRDATQLFHDVGHSQEARKLMAGYLV 978 V++FL+PE+++ L QT K + +C D VW++ W+ ++G + + K W + W+ KP QGWK F +FE W++++AAG ++ CL+GIEGGLYDI F++ HPGSP+TLL+NAGRD TQ F++VGHS AR+LM +LV Sbjct: 99 VSSFLQPEDLVRLGQTCKGGNKSCQTDLVWKKQWENRFGKLIVTNAWKKCLEFWDIS-WEVFVRKPPSQGWKRFFFEFEASWINMVAAGHDTLSS-CLIGIEGGLYDITNFIDLHPGSPETLLENAGRDVTQFFNEVGHSATARRLMRNHLV 248
BLAST of mRNA_C-australica_Contig_1002.3.2 vs. uniprot
Match: A0A835Z6K8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6K8_9STRA) HSP 1 Score: 137 bits (345), Expect = 2.840e-32 Identity = 64/139 (46.04%), Postives = 88/139 (63.31%), Query Frame = 1 Query: 502 LPLEVLHGVAAFLRPEEVLSLTQTVKSLSDACNGDEVWRELWKLKYGPMWDSAYSKDAKNRWGLEHWDPCKHKPKQGWKLLFAQFECMWLDILAAGCNSEEGPCLVGIEGGLYDIAKFVNKHPGSPDTLLDNAGRDATQ 918 LP ++ A L+PE++ L Q K A + + +W LW+ ++G +W S +DA RW HWDP +H P QGWKL F+QF W+ AAG N+EE C++GI G LY++ F+ +HPGSPDTLLD+AG DATQ Sbjct: 103 LPDDLRLRCLALLQPEDLFELAQASKGCQAAADAEPLWAGLWQYRFGRVWASQPLQDAAERWHC-HWDPLRHAPLQGWKLFFSQFALSWIGWAAAGSNTEER-CILGINGALYNVTDFLMEHPGSPDTLLDSAGCDATQ 239
BLAST of mRNA_C-australica_Contig_1002.3.2 vs. uniprot
Match: A0A7S2XZA4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZA4_9STRA) HSP 1 Score: 129 bits (324), Expect = 3.760e-30 Identity = 69/240 (28.75%), Postives = 121/240 (50.42%), Query Frame = 1 Query: 526 VAAFLRPEEVLSLTQTVKSLSDACNGDEVWRELWKLKYGPMWDSAYSKDAKNRWGLEHWDPCKHKPKQGWKLLFAQFECMWLDILAAGCNSEEGPCLVGIEGGLYDIAKFVNKHPGSPDTLLDNAGRDATQLFHDVGHSQEARKLMAGYLVLEPAFKGCCVLK---SVCDEVQEVRKKWD-----------AVPSCEICHRT----------------VGRCHAVFMPVEGTWSRWWSCC 1155 +A+F+ P+EV + T K+ + +W+E ++++G ++ S +D+ + HW+ + +P QGWK Q +C W DI AG N+E CLVGI+ ++++ +F+++HPGSP+T+L NAG + T+ F +VGHS A+ +M + L G + +CDE++ K+ ++P C C + + R F+P+ W+ WW CC Sbjct: 117 IASFMSPDEVGKFSMTDKNQYNRLQQPWIWKEQCQIQFGHIFSSQIFQDSLQKLHC-HWNE-EAEPIQGWKRFLLQLDCWWTDIACAGHNTERS-CLVGIDSSVFELTQFLDEHPGSPETILVNAGSNCTRFFEEVGHSVTAKAMMPAFECLSAKAGGIFSQRHRQKICDEMKAELKREHKELFHGPQIVYSLPLCNHCEKRGTGHLTEFHTPCMDMHLARAQVFFVPMTNRWAFWWPCC 353
BLAST of mRNA_C-australica_Contig_1002.3.2 vs. uniprot
Match: A0A7S3Y620_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y620_HETAK) HSP 1 Score: 127 bits (320), Expect = 8.270e-30 Identity = 61/135 (45.19%), Postives = 88/135 (65.19%), Query Frame = 1 Query: 577 KSLSDACNGDEVWRELWKLKYGPMWDSAYSKDAKNRWGLEHWDPCKHKP-KQGWKLLFAQFECMWLDILAAGCNSEEGPCLVGIEGGLYDIAKFVNKHPGSPDTLLDNAGRDATQLFHDVGHSQEARKLMAGYLV 978 K + +C D VW++ W+ ++G + + K W + W+ KP QGWK F +FE W++++AAG ++ CL+GIEGGLYDI F++ HPGSP+TLL+NAGRD TQ F++VGHS AR+LM +LV Sbjct: 57 KGGNKSCQTDLVWKKQWENRFGKLIVTNAWKKCLEFWDIS-WEVFVRKPPSQGWKRFFFEFEASWINMVAAGHDTLSS-CLIGIEGGLYDITNFIDLHPGSPETLLENAGRDVTQFFNEVGHSATARRLMRNHLV 189
BLAST of mRNA_C-australica_Contig_1002.3.2 vs. uniprot
Match: W7TKW6_9STRA (Cytochrome b5 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TKW6_9STRA) HSP 1 Score: 130 bits (327), Expect = 2.060e-29 Identity = 72/191 (37.70%), Postives = 107/191 (56.02%), Query Frame = 1 Query: 502 LPLEVLHGVAAFLRPEEVLSLTQTVKSLSDACNGDEVWRELWKLKYGPMWDSAYSKDAK-----NRWGLEHWDPCKHKPKQGWKLLFAQFECMWLDILAAGCNSEEGPCLVGIEGGLYDIAKFVNKHPGSPDTLLDNAGRDATQLFHDVGHSQEARKLMAGYLVLEPAFKG-----CCVLKSVCDEVQEVR 1044 LP EV + +L+P +VL LT ++ G++VWR W ++GP+W SA + A+ R + + + GW+ ++ FE W L AG N E+ C VG+EGG+YD+ F+ HPGS +T+L NAG DAT F DVGHS +AR +MA + ++ P +G CVL SV + ++E R Sbjct: 305 LPDEVQLEIVEYLQPRDVLRLTPVSRAARRLGEGEQVWRTKWAARFGPIWRSAPVQKAEMARKARRADGQRASATDGEMEGGWRHFYSVFELEWAAWLCAGRNREDS-CWVGLEGGVYDLTAFLEIHPGSKETILVNAGGDATAFFQDVGHSAQARAMMADFCIVPPPPQGVGHTEACVLHSVKEALREGR 494
BLAST of mRNA_C-australica_Contig_1002.3.2 vs. uniprot
Match: A0A7S2FKK9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FKK9_9STRA) HSP 1 Score: 119 bits (299), Expect = 5.450e-26 Identity = 61/177 (34.46%), Postives = 97/177 (54.80%), Query Frame = 1 Query: 475 VRADFTVYDLPLEVLHGVAAFLRPEEVLSLTQTVKSLSDACNGDEV------WRELWKLKYGPMWDSAYSKDAKNRWGLEHWDPCKHKPKQGWKLLFAQFECMWLDILAAGCNSEE--GPCLVGIEGGLYDIAKFVNKHPGSPDTLLDNAGRDATQLFHDVGHSQEARKLMAGYLVL 981 V +D T+ LP+E + FL + S+ ++L+ C+ + W+ W ++G W+S+ + A R HWDP + P W+ F ++E WL+ AG N E CL+G+ G +YD++ F+++HPG+P+T+LDNAG D T+ F DVGHS AR+ M V+ Sbjct: 200 VVSDLTLGCLPVETVLLTFDFLDLASLFSIAAVDQALNSLCDSTDTAFNECAWKSQWLRRFGAHWESSLMQAAAER-HHSHWDPSQPPPGGSWRRFFFEYEESWLEWSCAGQNVENVNQGCLIGVYGTVYDVSFFLDEHPGTPETILDNAGGDTTEFFEDVGHSTSARRRMKSLAVV 375
BLAST of mRNA_C-australica_Contig_1002.3.2 vs. uniprot
Match: A0A482SPR7_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SPR7_9ARCH) HSP 1 Score: 107 bits (267), Expect = 5.670e-22 Identity = 51/155 (32.90%), Postives = 89/155 (57.42%), Query Frame = 1 Query: 502 LPLEVLHGVAAFLRPEEVLSLTQTVKSLSDACNGDEVWRELWKLKYGPMWDSAYSKDAKNRWGLEHWDPCKH--KPKQGWKLLFAQFECMWLDILAAGCNSEEGPCLVGIEGGLYDIAKFVNKHPGSPDTLLDNAGRDATQLFHDVGHSQEARKL 960 L E+L + ++L E+++++ T + + D +W +LW++ YG W A + + + +WDP + P+ GW + FE WLD L AG +++ CL+ I+ +YD+ F+ +HPGSP+TL + AG DAT+LF+++ H+ A L Sbjct: 104 LSSELLVHLLSYLDTHEIVTISITSPRMRENFTSDIIWEQLWRVTYGSHWRHALIRQLRESRDI-YWDPADNFGPPQTGWYHFYLAFEVCWLDWLLAGYATQD-KCLLAIDNAIYDVTDFMFEHPGSPETLSEGAGCDATELFYEISHTSFAAGL 256
BLAST of mRNA_C-australica_Contig_1002.3.2 vs. uniprot
Match: A0A7S2B084_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B084_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 2.660e-19 Identity = 52/132 (39.39%), Postives = 71/132 (53.79%), Query Frame = 1 Query: 535 FLRPEEVLSLTQTVKSLSDACNGDE------VWRELWKLKYGPMWDSAYSKDAKNRWGLEHWDP---CKHKPKQGWKLLFAQFECMWLDILAAGCNSEEGPCLVGIEGGLYDIAKFVNKHPGSPDTLLDNAG 903 F+ VLSL T LS C+ +E VWR+ W ++G +W S A R G WDP C +GWK F +F W++ A N+ E CL+G+ GG+Y++ F+ HPGSPDT+LDNAG Sbjct: 32 FVDLRAVLSLAGTCSFLSHLCDNNETRHCNCVWRQRWTARFGSIWTSDLVSQAVKRDG-NAWDPKGGCPPAGCKGWKAFFFEFNETWINWTLAMQNTTEC-CLIGLHGGVYNMTDFLEVHPGSPDTILDNAG 161
BLAST of mRNA_C-australica_Contig_1002.3.2 vs. uniprot
Match: A0A7S2SV73_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SV73_9STRA) HSP 1 Score: 99.0 bits (245), Expect = 1.040e-18 Identity = 74/297 (24.92%), Postives = 110/297 (37.04%), Query Frame = 1 Query: 526 VAAFLRPEEVLSLTQTVKSLSDACNGDE----VWRELWKLKYGPMWDSAYSKDAKNRWGLEHWDPC----KHKPKQG------------WKLLFAQFECMWLDILAAGCNSEEGPCLVGIEGGLYDIAKFVNKHPGSPDTLLDNAGRDATQLFHDVGHSQEARKLMAGYLVLEPA--FKGCCVLKSVCDEVQEVRKKWDAVPSCEICH------------------------------------------------------RTVGRCHAVFMPVEGTWSRWWSCCGSLLSEGE*RD 1188 V FL +L + T + + C+ WR+ W ++G +W + + A R G+ W P + + + G W+ F +F+ W+D G N+ CLV + G +YD+ +F +HPGS +TLLDNAG DAT +F VGHS+ AR+ MA + +EP L + + P ++ H GRC + P W WWSCC SL S RD Sbjct: 229 VLGFLDRMSLLPVALTSRLAAQLCDSPHFEGCAWRDRWLRRFGHLWSTREIQAALQRHGVS-WFPSTGLHEAEARNGPAGSFGAPNGLSWRRFFYEFDEAWMDWALVGMNTP-ARCLVALHGTIYDLTQFKQEHPGSVETLLDNAGGDATPMFEGVGHSRVARRQMAQLVRIEPLPPLNRTSALSAAAQRALDYTMSHATPPGDDVVHLLEPREYSQGPTNAHTSHGNGTDARASPRPGYDVLTNQERVFYRHMALVCQSRGEHCGRCRVFYDPFRRQWRSWWSCCYSLDSMQPSRD 523 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1002.3.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_1002.3.2 >prot_C-australica_Contig_1002.3.2 ID=prot_C-australica_Contig_1002.3.2|Name=mRNA_C-australica_Contig_1002.3.2|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=383bp MTFAMNWEGTVAVLFSWDIWVWTVLGYIALHRHKLSANREYRAERENSDCback to top mRNA from alignment at C-australica_Contig_1002:4622..7000- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_1002.3.2 ID=mRNA_C-australica_Contig_1002.3.2|Name=mRNA_C-australica_Contig_1002.3.2|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2379bp|location=Sequence derived from alignment at C-australica_Contig_1002:4622..7000- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_1002:4622..7000- >mRNA_C-australica_Contig_1002.3.2 ID=mRNA_C-australica_Contig_1002.3.2|Name=mRNA_C-australica_Contig_1002.3.2|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1149bp|location=Sequence derived from alignment at C-australica_Contig_1002:4622..7000- (Chrysoparadoxa australica CS_1217)back to top |