mRNA_C-australica_Contig_1002.2.4 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_1002.2.4 vs. uniprot
Match: D8LEW1_ECTSI (D27-like_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEW1_ECTSI) HSP 1 Score: 310 bits (795), Expect = 7.330e-100 Identity = 157/243 (64.61%), Postives = 186/243 (76.54%), Query Frame = 3 Query: 210 RPPLTVL-GRAGPTDAPPSYDAADSNPFNAALLGYFRSKLADECGGQSPT--EGYDGLMEMILALNSKFMSQVETQQASRRTLQALFPSWLPGAFAVMFSKPFPGFSNRLNAWVTWWASQWLMGPSELNNVEETNDGSSGKGQGLLVTRPPFDSCRFLEHSGCASVCLNNCKIPTEEFFAKDMGLLLEMKPDYEDFSCQFSFGKAPEPRESDQVFNVACFEQCPSQGSLRK-------KCHQI 908 +PPL V+ GRAGPTDA P+YD D+ P + LLG FRSKLA+E GG GYDGLM+MI LN KF S+ +TQ+ASRR L++LFPSWLP +FAVMFSKPFP FS+RLNAWVT ASQWLMGPS+LN++E +DG+ G G GLLV R CRFLE +GCASVC+N CK+PTEEFFAKDMGL LEM P+YEDFSCQFSF K P R+ D+ F VACFEQCPS+G+LR+ +CHQI Sbjct: 76 KPPLKVIRGRAGPTDATPTYD--DTRPLDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIE-IDDGTVGVGHGLLVER-----CRFLEAAGCASVCMNTCKVPTEEFFAKDMGLALEMTPNYEDFSCQFSFNKTPLARDMDEAFRVACFEQCPSRGALRQPNQPAVARCHQI 310
BLAST of mRNA_C-australica_Contig_1002.2.4 vs. uniprot
Match: A0A835ZDY9_9STRA (D27-like_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDY9_9STRA) HSP 1 Score: 254 bits (648), Expect = 2.650e-79 Identity = 126/205 (61.46%), Postives = 152/205 (74.15%), Query Frame = 3 Query: 300 LLGYFRSKLADECGGQSPTEGYDGLMEMILALNSK--FMSQVETQQASRRTLQALFPSWLPGAFAVMFSKPFPGFSNRLNAWVTWWASQWLMGPSELNNVEETNDGSSGKGQGLLVTRPPFDSCRFLEHSGCASVCLNNCKIPTEEFFAKDMGLLLEMKPDYEDFSCQFSFGKAPEPRESDQVFNVACFEQCPSQGSLRKKCHQI 908 LLG FR KLA E GY GL+EMI +LN + + +TQQA+R+ LQ+LFP WLPGAFAVMFSKPFP FS R+NAWVT ASQWLMGPS++N+VE + G G G GLLV R CR+LE +GCASVC+N CKIPT+EFF KDMGL L+M PDY+DFSCQFSFGK P E D+VF VACFEQCP++ S ++ CH++ Sbjct: 2 LLGLFRKKLAAELQYDGSDPGYAGLIEMIRSLNDGPGYPTAHDTQQAARKVLQSLFPPWLPGAFAVMFSKPFPQFSCRMNAWVTLVASQWLMGPSKINDVE-IDGGQMGVGHGLLVKR-----CRYLEEAGCASVCVNTCKIPTQEFFMKDMGLPLQMTPDYDDFSCQFSFGKIPLEPEQDEVFAVACFEQCPNKASTKRLCHKV 200
BLAST of mRNA_C-australica_Contig_1002.2.4 vs. uniprot
Match: A8IC34_CHLRE (Predicted protein n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8IC34_CHLRE) HSP 1 Score: 251 bits (642), Expect = 2.100e-77 Identity = 126/252 (50.00%), Postives = 159/252 (63.10%), Query Frame = 3 Query: 156 SAPRQARTRVVMSAEQ-PRRPPLTVLGRAGPTDAPPSYDAADSNPFNAALLGYFRSKLADECGGQSPTEGYDGLMEMILALNSKFMSQVETQQASRRTLQALFPSWLPGAFAVMFSKPFPGFSNRLNAWVTWWASQWLMGPSELNNVEETNDGSSGKGQGLLVTRPPFDSCRFLEHSGCASVCLNNCKIPTEEFFAKDMGLLLEMKPDYEDFSCQFSFGKAPEPRESDQVFNVACFEQCPSQGSLRKKCHQI 908 SAP +R+ +V P P L +AGP DA P Y DS P N ++ FR K+ + G S GYD ++++ LN+KF + ETQ+A+R L ALFPSWLPGAF VMFS+P P FS RLNA T QWLMGP ++N+VE + G G G G+LV R CR+LE +GCASVC+N+CK+PT+ FF KDMGL L M P+Y+DFSCQFSFGK P+P + D F CF QCPS+ S C I Sbjct: 23 SAPCSSRSTIVTRVSSAPGAPSPANLRQAGPVDAAPDYKPIDSQPLNIIVMALFRRKMVEALGSDSKLSGYDAIIDLTRKLNTKFRTAAETQEATRGILNALFPSWLPGAFKVMFSRPLPEFSCRLNALATAMTCQWLMGPCKVNDVE-IDGGKVGTGHGVLVER-----CRYLEQAGCASVCINSCKVPTQSFFEKDMGLPLTMTPNYDDFSCQFSFGKTPDPVDRDPAFATPCFTQCPSKRSRTPVCGGI 268
BLAST of mRNA_C-australica_Contig_1002.2.4 vs. uniprot
Match: A0A8J4BT63_9CHLO (D27-like_C domain-containing protein n=2 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4BT63_9CHLO) HSP 1 Score: 247 bits (631), Expect = 6.140e-76 Identity = 121/214 (56.54%), Postives = 146/214 (68.22%), Query Frame = 3 Query: 237 AGPTDAPPSYDAADSNPFNAALLGYFRSKLADECGGQSPTEGYDGLMEMILALNSKFMSQVETQQASRRTLQALFPSWLPGAFAVMFSKPFPGFSNRLNAWVTWWASQWLMGPSELNNVEETNDGSSGKGQGLLVTRPPFDSCRFLEHSGCASVCLNNCKIPTEEFFAKDMGLLLEMKPDYEDFSCQFSFGKAPEPRESDQVFNVACFEQCPSQ 878 AGPTD PSY DS P N ++ FR K+ G S GYD ++++ LNSKF + ETQ+A+R L ALFPSWLPGAF VMFSKPFP FS RLNA T QWLMGP ++N+VE + G GKG G+LV R CR+LE +GCASVC+N+CKIPT+ FF+KDMGL L M P+YEDFSCQF+FGK P E D+ F CF QCPS+ Sbjct: 42 AGPTDPAPSYRDIDSQPVNVVVMALFRRKMVAALGSDSELYGYDAIIDLTRRLNSKFRTGAETQEATRAILNALFPSWLPGAFKVMFSKPFPEFSCRLNALATALTCQWLMGPCKVNDVE-IDGGIVGKGHGVLVER-----CRYLEQAGCASVCINSCKIPTQTFFSKDMGLQLTMTPNYEDFSCQFAFGKTPMLAEMDEAFTTPCFRQCPSK 249
BLAST of mRNA_C-australica_Contig_1002.2.4 vs. uniprot
Match: I0YX40_COCSC (D27-like_C domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YX40_COCSC) HSP 1 Score: 243 bits (619), Expect = 1.320e-74 Identity = 118/217 (54.38%), Postives = 147/217 (67.74%), Query Frame = 3 Query: 228 LGRAGPTDAPPSYDAADSNPFNAALLGYFRSKLADECGGQSPTEGYDGLMEMILALNSKFMSQVETQQASRRTLQALFPSWLPGAFAVMFSKPFPGFSNRLNAWVTWWASQWLMGPSELNNVEETNDGSSGKGQGLLVTRPPFDSCRFLEHSGCASVCLNNCKIPTEEFFAKDMGLLLEMKPDYEDFSCQFSFGKAPEPRESDQVFNVACFEQCPSQ 878 +AGP PSY++ DS P N A++ FR K+ G S EGYD ++++ LNSK + +TQ +R+ L +LFPSWLP AF VMFSKP P S +LNAWVT QWLMGP ++N+VE + G G GQG+LV R CR+LE +GCASVCLN+CKIPT+EFFAKDMGL L M P+YEDFSCQFSFG P+P D+ F CF QCPS+ Sbjct: 5 FSKAGPETPAPSYESIDSQPLNRAIMSLFRQKMVAAIGKNSDKEGYDAIVDLTRLLNSKSSNPRDTQVKTRQILLSLFPSWLPPAFKVMFSKPMPEVSCQLNAWVTMLTCQWLMGPCKVNDVE-LDGGRIGSGQGVLVER-----CRYLEETGCASVCLNSCKIPTQEFFAKDMGLPLTMTPNYEDFSCQFSFGLTPKPAAIDEAFATPCFSQCPSK 215
BLAST of mRNA_C-australica_Contig_1002.2.4 vs. uniprot
Match: A0A7J7QQS2_9CHLO (D27-like_C domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QQS2_9CHLO) HSP 1 Score: 243 bits (619), Expect = 1.500e-74 Identity = 112/222 (50.45%), Postives = 152/222 (68.47%), Query Frame = 3 Query: 234 RAGPTDAPPSYDAADSNPFNAALLGYFRSKLADECGGQSPTEGYDGLMEMILALNSKFMSQVETQQASRRTLQALFPSWLPGAFAVMFSKPFPGFSNRLNAWVTWWASQWLMGPSELNNVEETNDGSSGKGQGLLVTRPPFDSCRFLEHSGCASVCLNNCKIPTEEFFAKDMGLLLEMKPDYEDFSCQFSFGKAPEPRESDQVFNVACFEQCPSQGSLRKKC 899 +AGP + P Y A DS P N ++ FR K+ G S GY+ ++++ LN+ + + Q +R+ L++LFPSWLPGAFAVMFSKP P FS +LNA T QWLMGP ++N+VE +DGS G+G G+LV R CR+LE +GCAS+C+N+CK+PT+EFF KDMGL L M P+YEDFSCQF+FGKAP P++ D+ F+ CF+QCPS+ + C Sbjct: 1 QAGPVEPVPDYTAIDSQPLNQVVMALFRRKMVAAIGSDSQLSGYEAIIDLTRRLNASYSEARQVQLTTRKILKSLFPSWLPGAFAVMFSKPLPEFSCKLNALATALTCQWLMGPCKVNDVE-LDDGSVGQGMGVLVER-----CRYLEQAGCASICINSCKVPTQEFFEKDMGLPLTMTPNYEDFSCQFTFGKAPLPQQLDEAFSTPCFQQCPSRAARYSDC 216
BLAST of mRNA_C-australica_Contig_1002.2.4 vs. uniprot
Match: A0A0D2MYG1_9CHLO (D27-like_C domain-containing protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MYG1_9CHLO) HSP 1 Score: 241 bits (616), Expect = 2.460e-73 Identity = 120/255 (47.06%), Postives = 156/255 (61.18%), Query Frame = 3 Query: 156 SAPRQARTRVVMSAEQPRRPPLTVLGRAGPTDAP--------------PSYDAADSNPFNAALLGYFRSKLADECGGQSPTEGYDGLMEMILALNSKFMSQVETQQASRRTLQALFPSWLPGAFAVMFSKPFPGFSNRLNAWVTWWASQWLMGPSELNNVEETNDGSSGKGQGLLVTRPPFDSCRFLEHSGCASVCLNNCKIPTEEFFAKDMGLLLEMKPDYEDFSCQFSFGKAPEPRESDQVFNVACFEQCPSQ 878 SAPR+ PRRP LT+ AGP D PSY D+ P N ++ FR K+ + G S +GY ++++ LN ++ + +TQ A+RR L +LFPSWLPGAF VMFS P P FS RLNA T QWLMGP ++N+VE + G G G G+LV R CR+LE +GCAS+C+N+CK+PT+EFF KDMGL L M P+YEDFSCQF+FGK P P+ D+ F+ CF QCPS+ Sbjct: 24 SAPRRGAASSRPCPRAPRRPRLTLARAAGPLDGAAATQLRQAGPGTPAPSYAEIDAQPLNRVVMALFRRKMVESIGSDSQLQGYPAIIDLTRRLNRQYQTARDTQLATRRILNSLFPSWLPGAFKVMFSAPLPAFSCRLNALATALTCQWLMGPCKVNDVE-LDSGEVGSGMGVLVER-----CRYLEEAGCASICINSCKVPTQEFFEKDMGLPLTMTPNYEDFSCQFAFGKTPLPQSQDEAFSTPCFTQCPSK 272
BLAST of mRNA_C-australica_Contig_1002.2.4 vs. uniprot
Match: A0A835YAW5_9CHLO (D27-like_C domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835YAW5_9CHLO) HSP 1 Score: 235 bits (600), Expect = 3.900e-71 Identity = 121/245 (49.39%), Postives = 162/245 (66.12%), Query Frame = 3 Query: 186 VMSAEQPRRPPLTVLGRAGPTDAP-PSYDAADSNPFNAALLGYFRSKLADECGGQSPTEGYDGLMEMILALNSKFMSQVETQQASRRTLQALFPSWLPGAFAVMFSKPFPGFSNRLNAWVTWWASQWLMGPSELNNVEETNDGSSGKGQGLLVTRPPFDSCRFLEHSGCASVCLNNCKIPTEEFFAKDMGLLLEMKPDYEDFSCQFSFGKAPEPRESDQVFNVACFEQCPSQ---GSLRKKCHQI 908 + S E P PP T +AGP D P PSY+ D N ++ FR K+ D G S +GY G++++ LN+K+ + V+TQ+A+R L+ALFPSWL AF ++F+KP P FS RLNA T QWLMGP ++N+VE +DG+ GKGQG+ V R CR+LE +GCASVC+N+CK+PT+ FFA+DMG+ L M P+Y+DFSCQFSFGKAP + D F ACF QCPS+ G++ C I Sbjct: 37 ISSVEAPT-PPATR--QAGPADVPAPSYEEIDRKAMNVLVMSLFRRKMVDALGVDSQQQGYAGIVDLTRKLNNKYRNPVDTQEATRAILKALFPSWLLPAFRMLFAKPMPDFSCRLNAVATALTCQWLMGPCKVNDVE-FDDGTVGKGQGVFVER-----CRYLEETGCASVCINSCKVPTQTFFARDMGIPLTMTPNYDDFSCQFSFGKAPPSVKLDGAFTTACFNQCPSKKARGAVATACGGI 272
BLAST of mRNA_C-australica_Contig_1002.2.4 vs. uniprot
Match: A0A2J8AIV6_9CHLO (D27-like_C domain-containing protein n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8AIV6_9CHLO) HSP 1 Score: 238 bits (607), Expect = 9.470e-71 Identity = 112/217 (51.61%), Postives = 151/217 (69.59%), Query Frame = 3 Query: 249 DAP-PSYDAADSNPFNAALLGYFRSKLADECGGQSPTEGYDGLMEMILALNSKFMSQVETQQASRRTLQALFPSWLPGAFAVMFSKPFPGFSNRLNAWVTWWASQWLMGPSELNNVEETNDGSSGKGQGLLVTRPPFDSCRFLEHSGCASVCLNNCKIPTEEFFAKDMGLLLEMKPDYEDFSCQFSFGKAPEPRESDQVFNVACFEQCPSQGSLRKK 896 D+P PSY A D P N ++ FR K+ G SP GYD ++++ LN+KF + ETQ+A+R L ALFPSWLPGAF VMF++P P S R+NA T QWLMGP ++N+VE T+DG+ G+G G+LV R CR+LE +GCA+VC+N+CK+PT+ FFAKDMGL L M P+Y+DFSCQF+FGK P P +D+ + +CF QCPS+ + R + Sbjct: 168 DSPTPSYAAIDVQPLNKIVMALFRRKMVAAVGSDSPLSGYDAIIDLTRRLNNKFRTAAETQEATRSILIALFPSWLPGAFKVMFARPLPELSCRMNALATALTCQWLMGPCKVNDVE-TDDGTVGEGHGVLVER-----CRYLEQAGCAAVCINSCKVPTQSFFAKDMGLALTMTPNYDDFSCQFAFGKTPLPVSADEAYTTSCFAQCPSKKARRNQ 378
BLAST of mRNA_C-australica_Contig_1002.2.4 vs. uniprot
Match: A0A4D9DA54_9STRA (D27-like_C domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DA54_9STRA) HSP 1 Score: 233 bits (594), Expect = 3.370e-70 Identity = 122/236 (51.69%), Postives = 156/236 (66.10%), Query Frame = 3 Query: 222 TVLGRAGPTDAPPSYDAADSNPFNAALLGYFRSKLADECGGQ-SPTEGYDGLMEMILALNSKFMS--QVETQQASRRTLQALFPSWLPGAFAVMFSKPFPGFSNRLNAWVTWWASQWLMGPSELNNVEETNDGSSGKGQGLLVTRPPFDSCRFLEHSGCASVCLNNCKIPTEEFFAKDMGLLLEMKPDYEDFSCQFSFGKAPEPRESDQVFNVACFEQCPSQ----GSLRKKCHQI 908 T L R GP DAPP Y PF+ L +FR+KL + GG + ++ + GL+E+I LN+ F + +V TQ+A++ L++LFPSWLP AFAVMFSKPFP FS R+NA +T + WLMG SE+ +V+ T GS G GQGLLV R CR+LE +GCAS+C+N CKIPT+ FF +DMGL L M PDY+DFSC F+FG P P D+ VACF QCP+ G L CHQI Sbjct: 53 TRLQRRGPIDAPPEY-GMQRRPFDGLLYAFFRAKLVQQLGGSDTASKDFAGLIELIRKLNTHFPASGKVGTQKAAQNILRSLFPSWLPAAFAVMFSKPFPAFSARMNAIITGLTTYWLMGESEIIDVDVTG-GSVGVGQGLLVKR-----CRYLEEAGCASICVNTCKIPTQNFFCQDMGLPLTMTPDYDDFSCTFAFGLTPPPEVDDEAMRVACFSQCPTAKAPTGEL-SNCHQI 280 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1002.2.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_1002.2.4 >prot_C-australica_Contig_1002.2.4 ID=prot_C-australica_Contig_1002.2.4|Name=mRNA_C-australica_Contig_1002.2.4|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=283bp MKVAALVGCAMFMQSCSAWVGLPGPHLSAPRQARTRVVMSAEQPRRPPLTback to top mRNA from alignment at C-australica_Contig_1002:2176..4360- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_1002.2.4 ID=mRNA_C-australica_Contig_1002.2.4|Name=mRNA_C-australica_Contig_1002.2.4|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2185bp|location=Sequence derived from alignment at C-australica_Contig_1002:2176..4360- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_1002:2176..4360- >mRNA_C-australica_Contig_1002.2.4 ID=mRNA_C-australica_Contig_1002.2.4|Name=mRNA_C-australica_Contig_1002.2.4|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=849bp|location=Sequence derived from alignment at C-australica_Contig_1002:2176..4360- (Chrysoparadoxa australica CS_1217)back to top |