mRNA_C-australica_Contig_1001.6.7 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-australica_Contig_1001.6.7 vs. uniprot
Match: D7FWY6_ECTSI (MORN repeat variant family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWY6_ECTSI) HSP 1 Score: 298 bits (762), Expect = 4.640e-82 Identity = 177/499 (35.47%), Postives = 248/499 (49.70%), Query Frame = 3 Query: 498 MKRYLFRLDHGLRADRRLREAKDWIDAQQGAKAKFWSDIREVTAMKQEGAALHIQSCYRGYRGRLRASERRAQNAAATCVQRHXXXXXXXRIAEEKKWDKVRVTPTSYALKITLSRSHVTQTSKTGWREYYDPDTRGFFYYEPETRNSTWDPPTCFADSMICLWDPWPYPYSSPHDRPCRARFTTMHAYQSHRLSAHSWHCPACSSENTAMTFPVCEMCGNSRDENGEDLEKVLKAKLKQMLFEAHNPNQPDFTSAWEGAEHSMEVAVFASEPAPERMVQLPNSRSEAEDEFGAHEFSDAMSKGMQCPPQHSKDKEIKEQLSSDPISSTEQLSNFSRPALAFGARLRVCHCFLNGQCSLTTCPMAHPGVRDDAKISESEVPGLRSIMEV--------------------------------EICSEALRAMWGEGEE-CPHGGLCHKYHPYVRPATADIIKKIYPKKNGPRVRMYPSGAKMDGTVKNEVFEGWGVYTWP 1895
M+ +L R D RA RRL++A++W+D K +W D++ A ++E AA +Q+ YRG+ GR A++RRA XXXXXXX E++W +++V TSY+LK+ RS Q GW EY+DPDT F+Y E T++STW+ P F+DSM C+WDPWP PYSSP D+PCR FT M +Q+HRL+AH W C + N+ MTFP CE+ D + +L + P + D + + AV + + + + G P G LRVCH F G+C+L+TCP AHPG+RDDAK+ E G R + +V ++C AL A +G+GE CP G C YHPYVRP+T +I+ +IYP++NG R ++YPSGA + G V NEVF+G+GVY+WP
Sbjct: 1 MRAFLRRRDRDGRASRRLQQAREWVDGCSSTKMGYWEDLKAAEADRREQAATAMQAAYRGWEGRQIAADRRAXXXXXXXXXXXXXXXXXXXXXTEERWKQLQVVRTSYSLKLLTQRSRQVQ-EVGGWVEYFDPDTSAFWYLENSTKHSTWNAPKDFSDSMTCVWDPWPVPYSSPLDKPCRKVFTNMAEFQAHRLNAHPWQCASWGQRNSGMTFPRCELW---------DSKDILPTRSASKTTGV--PRRKDVANGVLADREGVGGAVLRAAXXXXXXXXXXXXXXXS--------ITTTIGSGATASP---------------------------------GMNLRVCHRFTQGRCNLSTCPHAHPGIRDDAKLQRLETKGSRGLFQVSQTYGSGVENDDDVESLLRRMGDGGVGTPPPPKVCPLALAAAFGDGEPPCPSGQGCKMYHPYVRPSTDEIVARIYPRRNGDRTKVYPSGASLKGRVVNEVFQGYGVYSWP 446
BLAST of mRNA_C-australica_Contig_1001.6.7 vs. uniprot
Match: A0A7S3MGV2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MGV2_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 9.500e-19 Identity = 52/181 (28.73%), Postives = 86/181 (47.51%), Query Frame = 3 Query: 597 KFWSDIREVTAMKQEGAALHIQSCYRGYRGRLRASERRAQNAAATCVQRHXXXXXXXRIAEEKKWDKVRVTPTSYALKITLSRS-----HVTQTSKT-GWREYYDPDTRGFFYYEPETRNSTWDPPTCFADSMICLWDPWPYPYSSPHDRPCRARFTTMHAYQSHRLSAHSWHCPACSSEN 1121
K S +++ ++ AA IQ+ +G+ R + ++ +QR + + W + V + AL +SRS HV K W+E++DP T F+YY T+++TW P F ++C W+ +P PH +PCR F T+ AY++H H+W+C AC N
Sbjct: 15 KIASKSQQIHKAREYYAASKIQAIVKGFLDRKFCARKKKYQRVILLIQRVFKGKLGRLRWKREYWRSLSVVKSDSALHEIMSRSSKLREHVVPGKKPYKWKEFFDPLTESFWYYNTATKHNTWQVPLEFQKDLVCSWEGFPEAGGEPHVQPCRCTFDTVDAYRNHMRQGHAWYCVACHQRN 195
BLAST of mRNA_C-australica_Contig_1001.6.7 vs. uniprot
Match: A0A7S3MJB2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MJB2_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 4.200e-13 Identity = 48/126 (38.10%), Postives = 70/126 (55.56%), Query Frame = 3 Query: 1530 RLRVCHCFLNGQCSLTTCPMAHPGVRDDA----KISESEVPGLRSIME-VEICSEALRAMWGEGEECPHGGLCHKYHPYVRPATADIIKKIYPKKNGPRVRMYPSGAKMDGTVKNEVFEGWGVYTW 1892
+L VC FL G C+LTTCP+AHPG+RD + K V G + + V +C E C +G C YH Y+RP+T +II IYP G +++ + S A++ G V +F+G+GV T+
Sbjct: 60 KLTVCSKFLAGTCTLTTCPLAHPGLRDSSRPKQKTLRDPVSGEKVVTHYVYLCPEVTPLC----NNCHNGNACRNYHVYIRPSTQEIILAIYPILTGRKIKDFGS-ARLVGNVFRGLFDGYGVMTY 180 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1001.6.7 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_1001.6.7 >prot_C-australica_Contig_1001.6.7 ID=prot_C-australica_Contig_1001.6.7|Name=mRNA_C-australica_Contig_1001.6.7|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=897bp MKRYLFRLDHGLRADRRLREAKDWIDAQQGAKAKFWSDIREVTAMKQEGAback to top mRNA from alignment at C-australica_Contig_1001:9789..17384- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_1001.6.7 ID=mRNA_C-australica_Contig_1001.6.7|Name=mRNA_C-australica_Contig_1001.6.7|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=7596bp|location=Sequence derived from alignment at C-australica_Contig_1001:9789..17384- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_1001:9789..17384- >mRNA_C-australica_Contig_1001.6.7 ID=mRNA_C-australica_Contig_1001.6.7|Name=mRNA_C-australica_Contig_1001.6.7|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=2691bp|location=Sequence derived from alignment at C-australica_Contig_1001:9789..17384- (Chrysoparadoxa australica CS_1217)back to top |