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Homology
BLAST of mRNA_C-australica_Contig_1001.1.1 vs. uniprot
Match: A0A835YNG4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNG4_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 3.440e-18 Identity = 40/69 (57.97%), Postives = 49/69 (71.01%), Query Frame = 1 Query: 1 SSYYNAPVSINICQCEEVIPGTYNRVVELQISGHKFCTAHSIIALHSDACIEAVRGKSIGIGQLFRSCE 207
SSYYNAPV ++I QC+ Y R+V L + G +FC A SI+ LHSDACIEAV KS+GIGQLFR +
Sbjct: 142 SSYYNAPVDVHIHQCDRQGEHVYERLVTLSVGGVQFCEAKSIVVLHSDACIEAVETKSVGIGQLFRHLD 210
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 0 |
| Seed ortholog | 2850.Phatr48906 |
| Model size | 240 |
| Max annot lvl | 2836|Bacillariophyta |
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Evalue | 4.96e-05 |
| EggNOG OGs | 2DIV6@1|root,2RWUQ@2759|Eukaryota,2XDTI@2836|Bacillariophyta |
| Cds size | 240 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1682586736.0938144-CDS-C-australica_Contig_1001:135..375 | 1682586736.0938144-CDS-C-australica_Contig_1001:135..375 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_1001 136..375 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_1001.1.1 >prot_C-australica_Contig_1001.1.1 ID=prot_C-australica_Contig_1001.1.1|Name=mRNA_C-australica_Contig_1001.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=80bp
SSYYNAPVSINICQCEEVIPGTYNRVVELQISGHKFCTAHSIIALHSDAC
IEAVRGKSIGIGQLFRSCELAWHFSSRCS* back to topmRNA from alignment at C-australica_Contig_1001:136..375+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-australica_Contig_1001.1.1 ID=mRNA_C-australica_Contig_1001.1.1|Name=mRNA_C-australica_Contig_1001.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=240bp|location=Sequence derived from alignment at C-australica_Contig_1001:136..375+ (Chrysoparadoxa australica CS_1217)
AGCTCCTACTACAATGCACCAGTATCTATCAACATCTGCCAGTGCGAAGA
GGTCATCCCAGGCACTTACAATAGAGTTGTAGAGCTCCAAATTAGTGGTC
ACAAGTTTTGCACGGCTCACTCCATTATTGCACTGCACAGTGATGCATGT
ATCGAAGCTGTCAGGGGCAAGAGCATAGGAATTGGGCAGCTCTTCAGGTC
ATGTGAGCTGGCATGGCACTTCTCCAGTCGTTGCTCATAA back to topCoding sequence (CDS) from alignment at C-australica_Contig_1001:136..375+ >mRNA_C-australica_Contig_1001.1.1 ID=mRNA_C-australica_Contig_1001.1.1|Name=mRNA_C-australica_Contig_1001.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=240bp|location=Sequence derived from alignment at C-australica_Contig_1001:136..375+ (Chrysoparadoxa australica CS_1217)
AGCTCCTACTACAATGCACCAGTATCTATCAACATCTGCCAGTGCGAAGA
GGTCATCCCAGGCACTTACAATAGAGTTGTAGAGCTCCAAATTAGTGGTC
ACAAGTTTTGCACGGCTCACTCCATTATTGCACTGCACAGTGATGCATGT
ATCGAAGCTGTCAGGGGCAAGAGCATAGGAATTGGGCAGCTCTTCAGGTC
ATGTGAGCTGGCATGGCACTTCTCCAGTCGTTGCTCATAA back to top
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