mRNA_C-australica_Contig_1000.1.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_1000.1.1 vs. uniprot
Match: D7FNG6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNG6_ECTSI) HSP 1 Score: 117 bits (294), Expect = 2.360e-27 Identity = 73/181 (40.33%), Postives = 100/181 (55.25%), Query Frame = 1 Query: 58 LVHSDVRRSMLTPG--MHVLDVLLQLLRCPVPAALKGAIFKVLAACAQDEAVAAWLWQQLEAMQVINTNPD-------GGGQ----------EATGLKFEMETVESSSKTYPATEGFCCLMQELLLRNLPLDLGANQQRR--PGLGPYLDFLIEDVLLKADEREYTQPGEKWRIVARVLQV 537 ++ VRRS+ G VL L L+ C V +LKG+I+K LAACA+D A +W +E Q++ T GGG + GL EME VES +TYP TEGFCCL+QEL+ +LP LG + R G+ PY+ +L++ VL+ E + GE+WR+ ARVLQV Sbjct: 1 MLDEGVRRSLTNSGNSFRVLTTLTNLVTCGVRPSLKGSIYKALAACAKDPETARRIWIFIEEAQLVPTGTGRQEGVIVGGGMAKNANSSSNSQPRGLFAEMEQVESRERTYPVTEGFCCLIQELVQHDLPYTLGEKTRYRGASGIQPYVAYLLKCVLIP--ELRFADAGERWRVAARVLQV 179
BLAST of mRNA_C-australica_Contig_1000.1.1 vs. uniprot
Match: A0A433SNW3_ELYCH (Uncharacterized protein (Fragment) n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A433SNW3_ELYCH) HSP 1 Score: 114 bits (285), Expect = 4.920e-26 Identity = 66/175 (37.71%), Postives = 95/175 (54.29%), Query Frame = 1 Query: 19 DLLGAFCELLQRVLVHSDVRRSMLTPGMH--VLDVLLQLLRCPVPAALKGAIFKVLAACAQDEAVAAWLWQQLEAMQVINTNPDGGGQEATGLKFEMETVESSSKTYPATEGFCCLMQELLLRNLPLDLGANQQRRPGLGPYLDFLIEDVLLKADEREYTQPGEKWRIVARVLQV 537 + + A L + + S+ RS V+ VL LL C VP +KG I + LA+ AQ AA +WQ LE+ Q++ T ++ +K E+E VES ++ +P T GF LM L +PL LGA R PG PYLDF++ VLLK D R Y + EKW++V+ L++ Sbjct: 585 EAVCACLRLTRHIAEQSETCRSAFCENQQWSVVMVLFGLLSCSVPFTMKGEILRTLASIAQTPVFAATIWQALESSQILPTISSHDKKQPNSIKVELEEVESRNEEFPFTRGFLQLMSALTQFPVPLGLGAGT-RTPGFDPYLDFILNSVLLKYDTRAYKERAEKWQVVSSCLEI 758
BLAST of mRNA_C-australica_Contig_1000.1.1 vs. uniprot
Match: Q16G68_AEDAE (AAEL014502-PA n=2 Tax=Culicinae TaxID=43817 RepID=Q16G68_AEDAE) HSP 1 Score: 113 bits (282), Expect = 1.180e-25 Identity = 68/187 (36.36%), Postives = 99/187 (52.94%), Query Frame = 1 Query: 1 LSPRVADLLGAFCELLQRVLVHSDVRRSMLT--PGMHVLDVLLQLLRCPVPAALKGAIFKVLAACAQDEAVAAWLWQQLEAMQVINTNPDGGGQEATGLKFEMETVESSSKTYPATEGFCCLMQELLLRNLPLDLGANQQRRPGLGPYLDFLIEDVLLKADEREYTQPGEKWRIVARVLQVKECMSQ 555 ++P+ L A ++++ V H +V R L P L VLL L+ C VP +LK + + LAA + + A LW LEA QVI T P G++ E+E +ES ++TYP T G L+ L +P LGA R+PGL PY+ F+I+ V L+ R Y P EKW+I + L++ Q Sbjct: 579 INPQEIAGLQAVLQVIRAVATHDEVARVALCEHPNWAPLHVLLGLISCSVPISLKAELVQTLAALGKSKETALQLWNNLEASQVITTIPTTSTFANRGIESELEEIESRNETYPLTLGMLDLLYTLCETAIPRGLGAGP-RKPGLDPYVTFIIDAVFLRFYNRNYKNPTEKWQIAEKCLRLLNAFVQ 764
BLAST of mRNA_C-australica_Contig_1000.1.1 vs. uniprot
Match: UPI001C728B15 (nuclear pore complex protein Nup205 n=1 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=UPI001C728B15) HSP 1 Score: 112 bits (281), Expect = 1.710e-25 Identity = 64/183 (34.97%), Postives = 102/183 (55.74%), Query Frame = 1 Query: 1 LSPRVADLLGAFCELLQRVLVHSDVRRSMLTPGMHVLD--VLLQLLRCPVPAALKGAIFKVLAACAQDEAVAAWLWQQLEAMQVINTNPDGGGQEATGLKFEMETVESSSKTYPATEGFCCLMQELLLRNLPLDLGANQQRRPGLGPYLDFLIEDVLLKADEREYTQPGEKWRIVARVLQVKE 543 ++P D L + +L+ +++ ++ R L+ H + V+L L+ C VPA+LK A+ +AA A ++ +WQ LE QVI T +G+ E+E VE+ + YP T G L+ LL P +LG + R PG+ PYL+F+++ VLLK + R Y PGEKW+I+A ++ E Sbjct: 583 ITPLELDGLISVLKLISQIVKLDEIARITLSENTHYVPTVVILGLITCSVPASLKAALLNCMAAFATSPDISLNIWQGLEMAQVIPTVKSVAVYHPSGILMELEEVETRMEEYPVTRGMLTLLDSLLNHPFPNNLG-HATRHPGIEPYLEFVLDCVLLKCNSRAYKNPGEKWKIMALCYKILE 764
BLAST of mRNA_C-australica_Contig_1000.1.1 vs. uniprot
Match: UPI001651F797 (nuclear pore complex protein Nup205 n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI001651F797) HSP 1 Score: 112 bits (281), Expect = 1.710e-25 Identity = 66/181 (36.46%), Postives = 100/181 (55.25%), Query Frame = 1 Query: 1 LSPRVADLLGAFCELLQRVLVHSDVRRSMLTPGMH--VLDVLLQLLRCPVPAALKGAIFKVLAACAQDEAVAAWLWQQLEAMQVINTNPDGGGQEATGLKFEMETVESSSKTYPATEGFCCLMQELLLRNLPLDLGANQQRRPGLGPYLDFLIEDVLLKADEREYTQPGEKWRIVARVLQV 537 ++P+ + + + +L + + V ++ RS V+ VL LL C V +KG + + LAA +Q AA +WQ LEA Q++ T G++ G + E+E VES ++ YP T GF LM L L +P+ LGA R PG PYLDF++ +LLK + R Y EKW++V L+V Sbjct: 581 MTPQELEAVCSVLKLTRHIAVLNETCRSAFCENQQWSVVMVLFGLLGCSVTVQMKGELMRTLAAISQTPVFAATIWQTLEASQILPTTV-ASGEQPGGFRVELEEVESRNEEYPLTRGFLELMGSLTLFPVPMGLGAGT-RSPGFDPYLDFILNSILLKYNTRAYKSAEEKWQLVCGSLEV 759
BLAST of mRNA_C-australica_Contig_1000.1.1 vs. uniprot
Match: A0A2C9L850_BIOGL (Uncharacterized protein n=2 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9L850_BIOGL) HSP 1 Score: 108 bits (271), Expect = 3.400e-24 Identity = 66/181 (36.46%), Postives = 99/181 (54.70%), Query Frame = 1 Query: 1 LSPRVADLLGAFCELLQRVLVHSDVRRSMLTPGMH--VLDVLLQLLRCPVPAALKGAIFKVLAACAQDEAVAAWLWQQLEAMQVINTNPDGGGQEATGLKFEMETVESSSKTYPATEGFCCLMQELLLRNLPLDLGANQQRRPGLGPYLDFLIEDVLLKADEREYTQPGEKWRIVARVLQV 537 ++P+ + + A +L + + ++ RS V+ VL LL C V LKG + LA+ AQ AA +WQ LE+ Q++ T P Q +TG+K E+E VES + +P + GF LM L +P+ LGA R PG PYLDF++ +LLK + R Y EKW++V+ L+V Sbjct: 512 MTPQELEAVCAVLKLTKHIANLNETCRSAFCENQQWSVVMVLFGLLTCSVNIQLKGELLSTLASIAQTPVFAATIWQILESSQILQTLPTSRDQ-STGIKVELEEVESRHEEFPLSRGFLELMTSLTQFPVPMGLGAGT-RSPGFDPYLDFILNSLLLKYNARAYKMAEEKWKVVSGCLRV 690
BLAST of mRNA_C-australica_Contig_1000.1.1 vs. uniprot
Match: A0A6A4V883_AMPAM (Nuclear pore complex protein Nup205 n=2 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4V883_AMPAM) HSP 1 Score: 108 bits (270), Expect = 5.070e-24 Identity = 63/167 (37.72%), Postives = 91/167 (54.49%), Query Frame = 1 Query: 46 LQRVLVHSDVRRSML---TPGMHVLDVLLQLLRCPVPAALKGAIFKVLAACAQDEAVAAWLWQQLEAMQVINTNPDGGGQEATGLKFEMETVESSSKTYPATEGFCCLMQELLLRNLPLDLGANQQRRPGLGPYLDFLIEDVLLKADEREYTQPGEKWRIVARVLQV 537 L RV+ +D ++ TP L V+L+L C P LK + + LAA A+ VA LWQ LE Q++ T GQ+A G+K E+E VE+ ++ +P T F L+ L+ +P LGA R PG+ PY+ F+I DVLL D R Y P EK+ + L++ Sbjct: 574 LIRVIAENDASSRLVMCETPSWPPLVVMLRLQTCAAPGTLKAQLLRTLAALARAPEVAQALWQGLEQAQILQTTQVMPGQQARGIKMELEEVEARAEQFPQTRAFLGLLSVLVEAGVPASLGAGL-RAPGIHPYVAFVIHDVLLNFDSRAYKDPTEKYVVAGDCLEI 739
BLAST of mRNA_C-australica_Contig_1000.1.1 vs. uniprot
Match: A0A1I8PCB3_STOCA (Uncharacterized protein n=1 Tax=Stomoxys calcitrans TaxID=35570 RepID=A0A1I8PCB3_STOCA) HSP 1 Score: 108 bits (269), Expect = 6.920e-24 Identity = 65/179 (36.31%), Postives = 92/179 (51.40%), Query Frame = 1 Query: 1 LSPRVADLLGAFCELLQRVLVHSDVRRSMLT--PGMHVLDVLLQLLRCPVPAALKGAIFKVLAACAQDEAVAAWLWQQLEAMQVINTNPDGGGQEATGLKFEMETVESSSKTYPATEGFCCLMQELLLRNLPLDLGANQQRRPGLGPYLDFLIEDVLLKADEREYTQPGEKWRIVARVL 531 +SP+ + L A E+L+ V +H +V R + P + L L+ LL C VP LK I L+A + + A LW LEA Q+I T P + L+ E+E E + YP T L+ L+ +P +LG R+PGL PYL F+I + LK R Y P EKWR+ A+ L Sbjct: 567 ISPQEIEGLRAVLEVLRAVALHDEVARIAICEHPNWNPLFTLIGLLACSVPIYLKSDILMTLSALGRSKETAIPLWNNLEASQIIKTLPTNMTYDTCNLEMEIEQNECRLEQYPLTNSILDLLYSLVTTVIPKNLGGGP-RKPGLDPYLKFVINGIFLKFYNRTYKDPSEKWRVGAKCL 744
BLAST of mRNA_C-australica_Contig_1000.1.1 vs. uniprot
Match: A0A812D8D7_SEPPH (NUP205 n=1 Tax=Sepia pharaonis TaxID=158019 RepID=A0A812D8D7_SEPPH) HSP 1 Score: 107 bits (268), Expect = 9.060e-24 Identity = 56/141 (39.72%), Postives = 81/141 (57.45%), Query Frame = 1 Query: 115 VLLQLLRCPVPAALKGAIFKVLAACAQDEAVAAWLWQQLEAMQVINTNPDGGGQEATGLKFEMETVESSSKTYPATEGFCCLMQELLLRNLPLDLGANQQRRPGLGPYLDFLIEDVLLKADEREYTQPGEKWRIVARVLQV 537 VL L C +PA LK I LAA + +AA LWQ LEA Q++ T + + G++ E+E VES ++ Y + F L+ L+ ++P LGA R PG GPYLDF++++VLLK R Y P EKW++ L++ Sbjct: 595 VLFGLAGCSIPAGLKAQILLTLAALGKSPEIAASLWQNLEASQIVATVSNSVRHQQGGIQVELEEVESRNEEYTLSRAFLTLINTLINSSIPQGLGAGY-RPPGFGPYLDFIVDNVLLKCLARAYKNPAEKWKVAIAALEI 734
BLAST of mRNA_C-australica_Contig_1000.1.1 vs. uniprot
Match: B0W9E4_CULQU (Nuclear pore complex protein Nup205 n=9 Tax=Culex TaxID=53527 RepID=B0W9E4_CULQU) HSP 1 Score: 107 bits (268), Expect = 9.440e-24 Identity = 66/181 (36.46%), Postives = 96/181 (53.04%), Query Frame = 1 Query: 1 LSPRVADLLGAFCELLQRVLVHSDVRRSMLT--PGMHVLDVLLQLLRCPVPAALKGAIFKVLAACAQDEAVAAWLWQQLEAMQVINTNPDGGGQEATGLKFEMETVESSSKTYPATEGFCCLMQELLLRNLPLDLGANQQRRPGLGPYLDFLIEDVLLKADEREYTQPGEKWRIVARVLQV 537 ++P+ L A +++ V + +V R L P L VLL L+ C VP ALK + + LAA + + A LW LEA QVI T P G++ E+E +ES ++TYP G L+ L +P +GA R+PGL PY+ F+I+ V L+ R Y P EKW+I + LQ+ Sbjct: 577 INPQEIAGLQAVLLVIRAVATYDEVARVALCEHPNWAPLHVLLGLISCSVPIALKAELVQTLAALGKSKETALQLWNNLEASQVIATIPTTSTFVNRGIESELEEIESRNETYPLALGMLDLLYTLCETAIPKGIGAGP-RKPGLDPYVTFIIDAVFLRFYNRNYKNPAEKWQIAEKCLQL 756 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1000.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_1000.1.1 >prot_C-australica_Contig_1000.1.1 ID=prot_C-australica_Contig_1000.1.1|Name=mRNA_C-australica_Contig_1000.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=186bp LSPRVADLLGAFCELLQRVLVHSDVRRSMLTPGMHVLDVLLQLLRCPVPAback to top mRNA from alignment at C-australica_Contig_1000:1525..2521+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_1000.1.1 ID=mRNA_C-australica_Contig_1000.1.1|Name=mRNA_C-australica_Contig_1000.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=997bp|location=Sequence derived from alignment at C-australica_Contig_1000:1525..2521+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_1000:1525..2521+ >mRNA_C-australica_Contig_1000.1.1 ID=mRNA_C-australica_Contig_1000.1.1|Name=mRNA_C-australica_Contig_1000.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=558bp|location=Sequence derived from alignment at C-australica_Contig_1000:1525..2521+ (Chrysoparadoxa australica CS_1217)back to top |