mRNA_C-australica_Contig_10.2.6 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_10.2.6 vs. uniprot
Match: W7TYX5_9STRA (Glycine cleavage system regulatory protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TYX5_9STRA) HSP 1 Score: 119 bits (297), Expect = 6.920e-27 Identity = 68/179 (37.99%), Postives = 106/179 (59.22%), Query Frame = 2 Query: 11 TMLASVGRALGRREVIEVQRRSL----YHLLHAHGQDRVGIVKDLSKAVLDSGGSVVESRALRMGGDFAVMMRIQGDKAPSVQLD-------GLDIEIKE-TSQEIFERTPGAVHAADFDVQGPDVPGIVYAISNYISSKGLRIEQMHTEKRAAPFGGTDLFCMSGSVLSTEPIDIAVL 511 TM+ V L R ++ V R S + +L A G DR GIV D++K VLD+ G + ESR +RMG DF++MMR+ K + Q+ G+ + T++ + P A+F+V+G + PG+VY ++ ++GLR+E++HT+ + APFGGT LF M G+++S +PID A L Sbjct: 66 TMMHMVRVNLARAGMVSVSRASTPADSHFILTATGPDRAGIVFDIAKLVLDNNGDIQESRMMRMGCDFSLMMRVAAPKPDADQITQKLGKVGGMSVITHPVTAERANQVVPKPAWKANFNVEGVNHPGLVYKVTELFFARGLRVEKLHTDTKIAPFGGTVLFLMDGTIISDKPIDFADL 244
BLAST of mRNA_C-australica_Contig_10.2.6 vs. uniprot
Match: A0A7S2UU75_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UU75_9STRA) HSP 1 Score: 115 bits (289), Expect = 2.030e-26 Identity = 65/162 (40.12%), Postives = 99/162 (61.11%), Query Frame = 2 Query: 32 RALGRREVIEVQRRSLYHLLHAHGQDRVGIVKDLSKAVLDSGGSVVESRALRMGGDFAVMMRIQGDKAPSVQLDGLD----------IEIKETSQEIFERT-PGAVHAADFDVQGPDVPGIVYAISNYISSKGLRIEQMHTEKRAAPFGGTDLFCMSGSVLS 484 R+L + + + V R S + ++ A G DR GIV D +KAVLD GS+ ES+A+RMGGDF +MMRI +++ Q++ L ++++E S + F V F ++G D PGIV A+++++ KG IE++HTE ++APFGGT LF M+G S Sbjct: 17 RSLSQGQFLSV-RNSSHLIITASGPDRPGIVADFTKAVLDQNGSIAESKAVRMGGDFCIMMRILANQSGVTQMEDLKRSLSSVPNMAVDLREASPDKFGSLGTEPVCKTSFTLEGADHPGIVNAVTSFLCDKGFSIEELHTEAKSAPFGGTMLFLMNGKASS 177
BLAST of mRNA_C-australica_Contig_10.2.6 vs. uniprot
Match: A0A6S9KV36_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9KV36_HETAK) HSP 1 Score: 114 bits (284), Expect = 1.650e-25 Identity = 59/159 (37.11%), Postives = 95/159 (59.75%), Query Frame = 2 Query: 83 HLLHAHGQDRVGIVKDLSKAVLDSGGSVVESRALRMGGDFAVMMRIQGDKAPSVQ--------LDGLDI------EIKETSQEIFERTPGAVHAADFDVQGPDVPGIVYAISNYISSKGLRIEQMHTEKRAAPFGGTDLFCMSGSVLSTEPIDIAVLSA 517 +++ A G DR GIV D++KAVL++ GS+ ES+ ++MG DF +M+R+ + P + G+ + E+ ET F+ A+F ++G D PG+VYA++NY++ G+ ++ +HTE +APFGGT LF M+G S +P+D A L A Sbjct: 54 YIVTATGPDRSGIVADITKAVLENEGSIAESKMMKMGNDFCMMLRVSNIQTPKTDSFKSMVSSVSGMKVTVYPATEVSETFVPQFQ--------ANFKLEGADNPGLVYAVTNYLAKFGIWVDDIHTETASAPFGGTQLFVMTGKATSDQPVDAAALRA 204
BLAST of mRNA_C-australica_Contig_10.2.6 vs. uniprot
Match: A0A518GYY0_9BACT (Glycine cleavage system transcriptional repressor n=1 Tax=Tautonia plasticadhaerens TaxID=2527974 RepID=A0A518GYY0_9BACT) HSP 1 Score: 95.1 bits (235), Expect = 3.200e-19 Identity = 53/139 (38.13%), Postives = 84/139 (60.43%), Query Frame = 2 Query: 101 GQDRVGIVKDLSKAVLDSGGSVVESRALRMGGDFAVMMRIQGDKAPSVQLDGLDIEIKE------------TSQEIFERTPGAVHAADFDVQGPDVPGIVYAISNYISSKGLRIEQMHTEKRAAPFGGTDLFCMSGSVL 481 G DR+GIV++L++ +L+ GG+V SR R+GG+FAV+M + P Q+ GLD + E T + + E PG V +V+G D GI++ +++++S++G+ IE+M TE +APFGG LF MS V+ Sbjct: 11 GADRIGIVEELTRLLLERGGNVESSRMARLGGEFAVLMLVS---MPEDQISGLDSGLDELFLRGYRITTTPTDRPVVEARPGWV-TYHIEVEGADHEGIIHRVASHLSARGISIEEMETETASAPFGGVTLFNMSALVV 145
BLAST of mRNA_C-australica_Contig_10.2.6 vs. uniprot
Match: UPI0014727A2D (transcriptional regulator n=1 Tax=Tautonia rosea TaxID=2728037 RepID=UPI0014727A2D) HSP 1 Score: 90.5 bits (223), Expect = 1.410e-17 Identity = 53/145 (36.55%), Postives = 82/145 (56.55%), Query Frame = 2 Query: 74 SLYHLLHAHGQDRVGIVKDLSKAVLDSGGSVVESRALRMGGDFAVMMRIQGDKAPSVQLD---------GLDIEIKETSQEIFERTPGAVHAADFDVQGPDVPGIVYAISNYISSKGLRIEQMHTEKRAAPFGGTDLFCMSGSVL 481 S + +L G DR+GIV++L++ +LD GG+V SR R+GG+FAV+M + ++ +L G I T Q E G +V+G D GIV+ ++ ++S++G+ IE M TE +APFGG LF MS S++ Sbjct: 2 SRHVILTLTGADRIGIVEELTRILLDQGGNVETSRMARLGGEFAVLMLVSLPESQDAELHRGLEKLAARGYKFTITPTEQPYAEAHSGW-RGFRIEVEGADHEGIVHRVARHLSTQGISIESMETETTSAPFGGVPLFNMSASIV 145
BLAST of mRNA_C-australica_Contig_10.2.6 vs. uniprot
Match: UPI001260D165 (transcriptional regulator n=1 Tax=Tautonia marina TaxID=2653855 RepID=UPI001260D165) HSP 1 Score: 90.1 bits (222), Expect = 1.930e-17 Identity = 54/145 (37.24%), Postives = 83/145 (57.24%), Query Frame = 2 Query: 74 SLYHLLHAHGQDRVGIVKDLSKAVLDSGGSVVESRALRMGGDFAVMMRIQGDKAPSVQLD---------GLDIEIKETSQEIFERTPGAVHAADFDVQGPDVPGIVYAISNYISSKGLRIEQMHTEKRAAPFGGTDLFCMSGSVL 481 S + +L G DR+GIV++L++ +L+ G+V SR R+GG+FAV+M + +A L G + + T + E PG A +V+G D GIV+ ++ ++SS+G+ IE M TE +APFGG LF MS SV+ Sbjct: 2 SRHVILTLTGADRIGIVEELTRILLERDGNVETSRMARLGGEFAVLMLVSLPEARQEDLSQGLEGLASLGYKLTVTPTERPYAEVHPGW-QAFRIEVEGADDEGIVHRVARHLSSQGINIESMETETTSAPFGGAPLFNMSASVV 145
BLAST of mRNA_C-australica_Contig_10.2.6 vs. uniprot
Match: A0A7S2MFE7_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MFE7_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 1.770e-16 Identity = 51/150 (34.00%), Postives = 87/150 (58.00%), Query Frame = 2 Query: 71 RSLYHLLHAHGQDRVGIVKDLSKAVLDSGGSVVESRALRMGGDFAVMMRIQ-----GD--KAPSVQLDGLDIEIKETSQ-EIFERTPGAVHAADFDVQGPDVPGIVYAISNYISSKGLRIEQMHTEKRAAPFGGTDLFCMSGSVLSTEPI 496 + L+ +++A G DR GIV D++KAV+D+GG+V +S+A ++G F++MM + GD K + G++ ET+ + + P ++ F + G D PGIV+ +++ ++ L I++M T APFGGT LF M G + P+ Sbjct: 32 KMLHLVINAVGNDRPGIVSDITKAVVDAGGNVGDSQAAKLGSHFSLMMLVSVPENHGDLLKDSLDGMSGMNTSCFETNDPKSLDVHPKIAYSGQFTLSGADNPGIVHQVTSVLAKHKLSIDKMETSDEEAPFGGTQLFNMRGIANAMHPL 181
BLAST of mRNA_C-australica_Contig_10.2.6 vs. uniprot
Match: A0A7S0GHT8_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GHT8_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 9.640e-16 Identity = 51/148 (34.46%), Postives = 80/148 (54.05%), Query Frame = 2 Query: 80 YHLLHAHGQDRVGIVKDLSKAVLDSGGSVVESRALRMGGDFAVMMRIQGDKAPSVQ--------LDGLDIEIKETSQ-EIFERTPGAVHAADFDVQGPDVPGIVYAISNYISSKGLRIEQMHTEKRAAPFGGTDLFCMSGSVLSTEPI 496 + ++++ G DR GIV D++ + +G ++ ESRA+++G F+VMM + K + +DGL I ETS + E P + F + G D PGIVY +++ +S L IE + T APFGGT LF M G ++P+ Sbjct: 33 FFIVNSVGLDRSGIVSDMTGVMDKAGCNIGESRAVKLGNHFSVMMLVSAPKEETTSSLTEQLKVIDGLTITTFETSDPKAIEVNPQTGWSGQFKLSGADNPGIVYKVTSVLSKNRLSIESLLTTSEDAPFGGTKLFKMEGVATVSKPL 180
BLAST of mRNA_C-australica_Contig_10.2.6 vs. uniprot
Match: A0A7S2P976_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P976_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 1.830e-15 Identity = 49/143 (34.27%), Postives = 77/143 (53.85%), Query Frame = 2 Query: 86 LLHAHGQDRVGIVKDLSKAVLDSGGSVVESRALRMGGDFAVMMRIQGDKAPSVQLDGLDIEIKETSQEIFERT----PGAVHAAD--FDVQGPDVPGIVYAISNYISSKGLRIEQMHTEKRAAPFGGTDLFCMSGSVLSTEPI 496 ++ A G+DR GIV D++K V D GG+V +SRA+++G F++MM + +A +K+ E T P V A + F + G D PGIV+ ++ ++ G+ I + T + +APFGGT LF M G P+ Sbjct: 33 VISALGEDRTGIVADMTKLVTDVGGNVGDSRAMKLGSHFSLMMLVSVPEAKVDCFKSSIQSVKDIETLAIETTVAGSPTIVTAYEGKFILDGADSPGIVHKVTRLLAENGMNINDLRTSEESAPFGGTTLFSMEGVATVNSPL 175
BLAST of mRNA_C-australica_Contig_10.2.6 vs. uniprot
Match: A0A5C1QPN6_9SPIO (Amino acid-binding protein n=1 Tax=Oceanispirochaeta crateris TaxID=2518645 RepID=A0A5C1QPN6_9SPIO) HSP 1 Score: 83.2 bits (204), Expect = 5.470e-15 Identity = 53/153 (34.64%), Postives = 83/153 (54.25%), Query Frame = 2 Query: 86 LLHAHGQDRVGIVKDLSKAVLDSGGSVVESRALRMGGDFAVMMRIQGDKAPSVQLDG----------LDIEIKETSQ--EIFERTPGAVHAADFDVQGPDVPGIVYAISNYISSKGLRIEQMHTEKRAAPFGGTDLFCMSGSVLSTEPIDIAV 508 +L A G DR+GIV DL+ ++ SGG+++ESR +GG+FAV+M + G+K L L IEIK T+Q + P + D PGI++ ++ YI ++G+ IE + TE AP+ G LF M +V+ P+ ++V Sbjct: 7 VLTAVGHDRIGIVDDLTSSIEQSGGNILESRMSVLGGEFAVIMLVSGEKRTISSLITNQEKMEKEIELHIEIKPTNQPDQDLNGIPYTLKCVSLDS-----PGIIHTVTRYIRTEGINIENLETETAHAPWTGAPLFRMKANVI--VPLSVSV 152 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10.2.6 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_10.2.6 >prot_C-australica_Contig_10.2.6 ID=prot_C-australica_Contig_10.2.6|Name=mRNA_C-australica_Contig_10.2.6|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=227bp MLASVGRALGRREVIEVQRRSLYHLLHAHGQDRVGIVKDLSKAVLDSGGSback to top mRNA from alignment at C-australica_Contig_10:13533..16253- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_10.2.6 ID=mRNA_C-australica_Contig_10.2.6|Name=mRNA_C-australica_Contig_10.2.6|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2721bp|location=Sequence derived from alignment at C-australica_Contig_10:13533..16253- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_10:13533..16253- >mRNA_C-australica_Contig_10.2.6 ID=mRNA_C-australica_Contig_10.2.6|Name=mRNA_C-australica_Contig_10.2.6|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=681bp|location=Sequence derived from alignment at C-australica_Contig_10:13533..16253- (Chrysoparadoxa australica CS_1217)back to top |