mRNA_C-australica_Contig_10.16.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_10.16.1 vs. uniprot
Match: A0A836CMW8_9STRA (ThiF domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMW8_9STRA) HSP 1 Score: 270 bits (689), Expect = 2.620e-79 Identity = 140/268 (52.24%), Postives = 183/268 (68.28%), Query Frame = 2 Query: 158 YDARFGGIAQLHGVEAQAKLRDAHVCVIGLGGVGSWACEALARSGVGALTLIDLDDICVSNVNRQLHATDSTIGKLKVHEMQRRVMDINPECSVTAVADFVTGDNVKDVL-----------TGKGFDAVLDAVDSVDDKCEIINLARAINLPVVTVGAAGGMSDAGLIRTSDITRSEFDRLLHHVKKRLRQRYGFPTGSKRNLKGRKWGVASVWSAEKPPT--LTPSTANEGSSSFRKCDSLYGTACFVTGMFGFLAASLVVQVLTGA 922 Y RF G+A+L+G E +LRDAHVCV+GLGGVGSW+ EALARSGVG LTLIDLD IC+SN NRQ+HA TIGK K +Q+RV+DINP+C V DFV+ D V ++L T +D VLDA+DS++DKC +++ R + +PVVTVGAAGG +D + +D+TR ++D LL V+K LRQ +GFP G+KRN++GRKWGVA+V+S E P LT S CD +GTA FVTG+FG +AA +V ++ GA Sbjct: 9 YALRFAGVAKLYGQEGLQRLRDAHVCVVGLGGVGSWSVEALARSGVGRLTLIDLDSICISNTNRQMHALTGTIGKSKAQVLQQRVLDINPDCDVDVRLDFVSPDTVGELLLVADADAAGGRTLGRYDCVLDAIDSMEDKCALLDACRRVRMPVVTVGAAGGRADPARVAVADLTRVDYDSLLFRVRKTLRQDFGFPRGTKRNIRGRKWGVAAVYSTEVPEAEALTASGEVGPRMGLGGCDGSFGTASFVTGVFGLMAAGVVAGLIAGA 276
BLAST of mRNA_C-australica_Contig_10.16.1 vs. uniprot
Match: A0A2A2RX67_9BACT (tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA n=1 Tax=Pedosphaera sp. Tous-C6FEB TaxID=1982324 RepID=A0A2A2RX67_9BACT) HSP 1 Score: 237 bits (604), Expect = 3.700e-71 Identity = 136/257 (52.92%), Postives = 171/257 (66.54%), Query Frame = 2 Query: 158 YDARFGGIAQLHGVEAQAKLRDAHVCVIGLGGVGSWACEALARSGVGALTLIDLDDICVSNVNRQLHATDSTIGKLKVHEMQRRVMDINPECSVTAVADFVTGDNVKDVLTGKGFDAVLDAVDSVDDKCEIINLARAINLPVVTVGAAGGMSDAGLIRTSDITRSEFDRLLHHVKKRLRQRYGFPTGSKRNLKGRKWGVASVWSAEKPPTLTP---STANEGSSSFRK--CDSLYGTACFVTGMFGFLAASLVVQVL 913 +D RFGGIA+L E A+LR AHVCV+G+GGVGSW EALARSGVGALTLIDLD++C++NVNRQLHA D T+G+ KV M RV INPEC V+AVA+F T +LT F V+DA+D+V +KC ++ L RA LPV+ GAAGG DA +R +D+ + DRLL V+KRLR+ +GFP G GVA V+SAE P P + A +GS S + C+ YG+A FVTG FGF AA VV+ L Sbjct: 4 FDQRFGGIARLVSAEGLARLRAAHVCVVGIGGVGSWTVEALARSGVGALTLIDLDEVCITNVNRQLHALDGTVGRAKVEVMAERVRLINPECRVSAVAEFFTEATAARLLT-PDFSYVVDAIDAVANKCRLLALCRARKLPVIACGAAGGRLDATAVRLADLADATHDRLLAEVRKRLRKEHGFPPP------GEPTGVACVFSAETPVLPEPPACAEAGQGSDSAPRLNCEWGYGSATFVTGTFGFAAAGAVVRRL 253
BLAST of mRNA_C-australica_Contig_10.16.1 vs. uniprot
Match: A0A6I1K9H6_9BACT (UBA/THIF-type NAD/FAD binding protein n=1 Tax=Verrucomicrobia subdivision 3 bacterium TaxID=2052186 RepID=A0A6I1K9H6_9BACT) HSP 1 Score: 230 bits (587), Expect = 1.160e-68 Identity = 129/251 (51.39%), Postives = 162/251 (64.54%), Query Frame = 2 Query: 167 RFGGIAQLHGVEAQAKLRDAHVCVIGLGGVGSWACEALARSGVGALTLIDLDDICVSNVNRQLHATDSTIGKLKVHEMQRRVMDINPECSVTAVADFVTGDNVKDVLTGKGFDAVLDAVDSVDDKCEIINLARAINLPVVTVGAAGGMSDAGLIRTSDITRSEFDRLLHHVKKRLRQRYGFPTGSKRNLKGRKWGVASVWSAEKPPTLTP----STANEGSSSFRKCDSLYGTACFVTGMFGFLAASLVVQ 907 RFGGIA+L G +LR AHVCV+G+GGVGSW EALARSGVGALTLIDLD++CV+N+NRQ+HA D T+G+ KV M RV INPEC VTAVA+F T N +L F V+DA+DSV +KC ++ L R LPV++ GAAGG DA +R +D+ DRLL V+KRLR+ +GFP G++ GV +V+S E P P S E S C+ YG+A FVTG FGF AA V + Sbjct: 5 RFGGIARLVGAHGLQRLRAAHVCVVGIGGVGSWTVEALARSGVGALTLIDLDEVCVTNINRQIHALDGTVGRAKVDVMAERVRLINPECRVTAVAEFFTEANAARLLA-PNFGFVVDAIDSVSNKCRLLALCRERKLPVISCGAAGGRLDATAVRVADLANVTHDRLLAEVRKRLRKEHGFPAT------GKQLGVTAVFSPEAPIAPAPADCASAVGEPDSPRLNCEWGYGSASFVTGTFGFAAAGWVAR 248
BLAST of mRNA_C-australica_Contig_10.16.1 vs. uniprot
Match: A0A2A2RSD6_9BACT (tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA n=1 Tax=Pedosphaera sp. Tous-C6FEB TaxID=1982324 RepID=A0A2A2RSD6_9BACT) HSP 1 Score: 229 bits (583), Expect = 4.850e-68 Identity = 130/256 (50.78%), Postives = 168/256 (65.62%), Query Frame = 2 Query: 161 DARFGGIAQLHGVEAQAKLRDAHVCVIGLGGVGSWACEALARSGVGALTLIDLDDICVSNVNRQLHATDSTIGKLKVHEMQRRVMDINPECSVTAVADFVTGDNVKDVLTGKGFDAVLDAVDSVDDKCEIINLARAINLPVVTVGAAGGMSDAGLIRTSDITRSEFDRLLHHVKKRLRQRYGFPTGSKRNLKGRKWGVASVWSAE-----KPPTLTPSTANEGSSSFRKCDSLYGTACFVTGMFGFLAASLVVQVL 913 D RFGGIA+L A+LR AHVCV+G+GGVGSWA EALARSGVGALTLIDLD++CV+N+NRQLHA + T+G+ KV M RV I+PEC+VTAVA+F T N +L G AV+DA+D+V +K ++ L LPVVT GAAGG +A +R +D+ + DRLL V+KRLR +GFP G+ GVA+V+S E +PP T + ++ C+ YG+A FVTG FGF AA VV+ L Sbjct: 3 DERFGGIARLVSDAGLARLRSAHVCVVGIGGVGSWAVEALARSGVGALTLIDLDEVCVTNINRQLHALEGTVGRAKVEVMAERVRLIHPECTVTAVAEFFTEANAGRLLA-PGISAVVDAIDAVGNKSRLLALCVQRGLPVVTCGAAGGRLEATAVRLADLADASHDRLLAQVRKRLRGEFGFPAA------GKPMGVAAVFSPEAPILPEPPACATETEKDEATLRLNCEWGYGSATFVTGTFGFAAAGWVVRKL 251
BLAST of mRNA_C-australica_Contig_10.16.1 vs. uniprot
Match: A0A7S4PI85_GUITH (Hypothetical protein n=2 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4PI85_GUITH) HSP 1 Score: 233 bits (593), Expect = 6.180e-68 Identity = 121/265 (45.66%), Postives = 175/265 (66.04%), Query Frame = 2 Query: 167 RFGGIAQLHGVEAQAKLRDAHVCVIGLGGVGSWACEALARSGVGALTLIDLDDICVSNVNRQLHATDSTIGKLKVHEMQRRVMDINPECSVTAVADFVTGDNVKDVLTGK-------------GFDAVLDAVDSVDDKCEIINLARAINLPVVTVGAAGGMSDAGLIRTSDITRSEFDRLLHHVKKRLRQRYGFPTG---SKRNL-KGRKWGVASVWSAEKP-PTLTPSTANEGSSSFRKCDSLYGTACFVTGMFGFLAASLVVQ 907 RF GI +L+G + +LR+AHVCV+GLGGVGSW E+ ARSG+G +TL+DLD++C+SN+NRQL A DST+G+ K ++ R++DINPEC+V+ V F+ +N +L+G FD V+DA+DSVDDK +I+ + +P++T G AGG++D IR+ ++T+ E D LL HV+K+LRQ YGFP G KRN+ + + W + +V+S+EKP TL A++G FR CD GT+ VTG FG S +V+ Sbjct: 83 RFSGIKRLYGSSSLERLRNAHVCVVGLGGVGSWVAESCARSGIGKITLVDLDEVCISNINRQLCALDSTVGRPKAEVLRARILDINPECNVSCVLQFLRRENALSILSGMDGDEGIEPQRTNCSFDFVVDAIDSVDDKAALISACTFLKVPIITSGGAGGLTDPTAIRSEELTKVEDDELLFHVRKKLRQFYGFPQGLPHRKRNVCRVKPWKIQAVYSSEKPIQTLVEEAASQG---FRSCDFSMGTSAMVTGSFGLAMGSFIVK 344
BLAST of mRNA_C-australica_Contig_10.16.1 vs. uniprot
Match: A0A2G4I8R5_9BACT (tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA n=1 Tax=Pedosphaera sp. TaxID=2024890 RepID=A0A2G4I8R5_9BACT) HSP 1 Score: 226 bits (576), Expect = 5.120e-67 Identity = 128/254 (50.39%), Postives = 163/254 (64.17%), Query Frame = 2 Query: 161 DARFGGIAQLHGVEAQAKLRDAHVCVIGLGGVGSWACEALARSGVGALTLIDLDDICVSNVNRQLHATDSTIGKLKVHEMQRRVMDINPECSVTAVADFVTGDNVKDVLTGKGFDAVLDAVDSVDDKCEIINLARAINLPVVTVGAAGGMSDAGLIRTSDITRSEFDRLLHHVKKRLRQRYGFPTGSKRNLKGRKWGVASVWSAE-----KPPTLTPSTANEGSSSFRKCDSLYGTACFVTGMFGFLAASLVVQ 907 D RFGGIA+L E +LR AHVCV+G+GGVGSW EALARSGVGALTLIDLD++CV+N+NRQLHA D TIG+ KV M RV INP+C VTAV +F T + + L F V+DA+D++ +KC ++ L R LPV+ GAAGG DA +R +D+ + DRLL V+KRLRQ++GFP G +GVA V+SAE +PP + C+ YG+A FVTG FGF AA VV+ Sbjct: 3 DERFGGIARLVSAEGLQRLRAAHVCVVGIGGVGSWTVEALARSGVGALTLIDLDEVCVTNINRQLHALDGTIGRSKVEVMAERVRLINPDCRVTAVTEFFTEQSTQR-LFAPDFTCVVDAIDALGNKCRLLALCRERALPVIACGAAGGRLDATQVRVADLADATRDRLLAEVRKRLRQQHGFPPP------GEPFGVACVFSAETPVLPEPPACASEEPGNQPAPRLNCEWGYGSATFVTGTFGFAAAGWVVR 249
BLAST of mRNA_C-australica_Contig_10.16.1 vs. uniprot
Match: B9XDN1_PEDPL (UBA/THIF-type NAD/FAD binding protein n=1 Tax=Pedosphaera parvula (strain Ellin514) TaxID=320771 RepID=B9XDN1_PEDPL) HSP 1 Score: 225 bits (573), Expect = 1.620e-66 Identity = 130/263 (49.43%), Postives = 163/263 (61.98%), Query Frame = 2 Query: 152 SLYDARFGGIAQLHGVEAQAKLRDAHVCVIGLGGVGSWACEALARSGVGALTLIDLDDICVSNVNRQLHATDSTIGKLKVHEMQRRVMDINPECSVTAVADFVTGDNVKDVLTGKGFDAVLDAVDSVDDKCEIINLARAINLPVVTVGAAGGMSDAGLIRTSDITRSEFDRLLHHVKKRLRQRYGFPTGSKRNLKGRKWGVASVWSAEKP--PTLTPSTANE---GSSSFRKCDSLYGTACFVTGMFGFLAASLVVQVLTGAE 925 S Y+ RFGGI +L+ ++R AHVCVIG+GGVGSWA EALARSG G LTLIDLD++CVSNVNRQLHA D IGK KV M RR INPEC V AV F T N +++L + FD VLDA+DS KC +I L R +P++T GAAGG + I+ D+T+S DRLL + +LR R+GFP G K K+ VA V S E P P+ S + G+ C S +G+A FVTG F FLA + +V + E Sbjct: 2 SQYEERFGGIGRLYSAAGLERIRSAHVCVIGIGGVGSWAVEALARSGTGELTLIDLDEVCVSNVNRQLHALDGEIGKSKVEVMARRTQAINPECKVHAVNAFFTESNAQEILATR-FDYVLDAIDSSSKKCLMIALCRDKGIPIITTGAAGGRRNPAAIQLVDLTQSTNDRLLRETRSKLRTRHGFPRGEK------KFNVACVCSTELPVYPSQDGSVCPQPEPGTDHRLNCSSGFGSATFVTGAFAFLATAHIVHEIAQRE 257
BLAST of mRNA_C-australica_Contig_10.16.1 vs. uniprot
Match: UPI00178549A2 (tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA n=1 Tax=Pelagicoccus enzymogenes TaxID=2773457 RepID=UPI00178549A2) HSP 1 Score: 221 bits (564), Expect = 4.470e-65 Identity = 126/263 (47.91%), Postives = 165/263 (62.74%), Query Frame = 2 Query: 158 YDARFGGIAQLHGVEAQAKLRDAHVCVIGLGGVGSWACEALARSGVGALTLIDLDDICVSNVNRQLHATDSTIGKLKVHEMQRRVMDINPECSVTAVADFVTGDNVKDVLTGKGFDAVLDAVDSVDDKCEIINLARAINLPVVTVGAAGGMSDAGLIRTSDITRSEFDRLLHHVKKRLRQRYGFPTGSKRNLKGRKWGVASVWSAEKP--PTLTPSTANE--GSSSFR-KCDSLYGTACFVTGMFGFLAASLVVQVLTGAEPG 931 YD RFGGI +L+G A + R AHVC++G+GGVGSW EALARSG+G LTL+DLDDIC SN+NRQ+HA D IG K+ M +R INPEC V+ + F+T NV ++L GFD V+DA+DS + K +I + PV+T+G AGG D ++ D+ RS D+LL V+K+LRQ++GFP KR K+ + V+S E+P P E GS S R C S YG A +TG FGF AAS V++ L G E G Sbjct: 8 YDFRFGGIGRLYGAAALQRFRAAHVCIVGIGGVGSWIVEALARSGIGKLTLVDLDDICESNINRQIHALDGLIGASKIETMAQRCRAINPECEVSTLHTFLTAKNVDEILAA-GFDYVVDAIDSTNHKVALIAACKQSETPVLTIGGAGGRIDPTQVQICDLARSINDQLLKRVRKQLRQQHGFPRQKKR-----KFHIDCVFSPEEPLYPESCDIDGEEELGSKSVRLDCSSGYGAATHLTGTFGFFAASQVLKSLAGIEAG 264
BLAST of mRNA_C-australica_Contig_10.16.1 vs. uniprot
Match: A0A350EY84_9BACT (tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A350EY84_9BACT) HSP 1 Score: 221 bits (563), Expect = 5.210e-65 Identity = 123/259 (47.49%), Postives = 165/259 (63.71%), Query Frame = 2 Query: 158 YDARFGGIAQLHGVEAQAKLRDAHVCVIGLGGVGSWACEALARSGVGALTLIDLDDICVSNVNRQLHATDSTIGKLKVHEMQRRVMDINPECSVTAVADFVTGDNVKDVLTGKGFDAVLDAVDSVDDKCEIINLARAINLPVVTVGAAGGMSDAGLIRTSDITRSEFDRLLHHVKKRLRQRYGFPTGSKRNLKGRKWGVASVWSAE------KPPTLTPSTANEGSSSFRKCDSLYGTACFVTGMFGFLAASLVVQVLT 916 YD RFGGIA+L+G E +LR+AHV V+G+GGVGSWA EALARSGVG +TLIDLDDIC++N NRQ+HA + IG+LKV M+ R+ INP+C VT F+T NV +L GF VLDA+D+V +KC +I R + +VT G AGG D +R D+ D L+ V+++LR+ +GFP K GV V+S E + ++ + N+G S CDS YG+A FVTG FGF AA+ V+++LT Sbjct: 4 YDQRFGGIARLYGREGLERLREAHVAVVGIGGVGSWAAEALARSGVGRITLIDLDDICITNTNRQVHAVAADIGRLKVEAMRDRIAAINPDCRVTVEPVFLTAANVGPLLAA-GFSCVLDAIDNVANKCHLIAACRTSDCRIVTTGGAGGRIDPTQLRVGDLAHVTHDPLIRQVRRQLRREHGFPDEPKTTF-----GVPCVYSPEPVRYPWRDGSVCLTKENDGESLRLDCDSGYGSATFVTGAFGFAAAAEVLRLLT 256
BLAST of mRNA_C-australica_Contig_10.16.1 vs. uniprot
Match: A0A7V4MHW5_9BACT (tRNA threonylcarbamoyladenosine dehydratase n=1 Tax=Verrucomicrobia subdivision 3 bacterium TaxID=2052186 RepID=A0A7V4MHW5_9BACT) HSP 1 Score: 221 bits (563), Expect = 6.900e-65 Identity = 126/261 (48.28%), Postives = 162/261 (62.07%), Query Frame = 2 Query: 158 YDARFGGIAQLHGVEAQAKLRDAHVCVIGLGGVGSWACEALARSGVGALTLIDLDDICVSNVNRQLHATDSTIGKLKVHEMQRRVMDINPECSVTAVADFVTGDNVKDVLTGKGFDAVLDAVDSVDDKCEIINLARAINLPVVTVGAAGGMSDAGLIRTSDITRSEFDRLLHHVKKRLRQRYGFPTGSKRNLKGRKWGVASVWSAEKPPTLTP------STANEGSSSFRKCDSLYGTACFVTGMFGFLAASLVVQVLTGA 922 Y FGG+ +L+GV Q +LR AHVCVIG+GGVGSWA EALARSGVGALTL+DLDDICVSN NRQLHA + + K KV + RV INPEC V V F N +++L + FD V DA+D+V +K + L R + LPV+T G AGG D +R +D+ + DRLL ++K LR +GFP G RK+G+ +V S E PP +T G+ C S GTA FVTG FGF+AA+ +V+ + GA Sbjct: 4 YQLAFGGVRRLYGVAGQGRLRRAHVCVIGVGGVGSWAVEALARSGVGALTLVDLDDICVSNTNRQLHALEGELHKPKVESLAARVRAINPECQVHPVRAFFVAANARELLAPR-FDFVFDAMDAVREKALCLALCRELGLPVITSGGAGGRRDPARVRVTDLALATHDRLLQSLRKTLRAEHGFPRGE------RKFGIEAVCSTE-PPVFPHRDGGVCATREAGTDLRLDCRSGLGTATFVTGTFGFVAAARIVEQIAGA 256 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_10.16.1 >prot_C-australica_Contig_10.16.1 ID=prot_C-australica_Contig_10.16.1|Name=mRNA_C-australica_Contig_10.16.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=312bp MGVRRLVIAPSLAFPFLSFFSSCVGAFTMTGGSLYDARFGGIAQLHGVEAback to top mRNA from alignment at C-australica_Contig_10:46871..49053+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_10.16.1 ID=mRNA_C-australica_Contig_10.16.1|Name=mRNA_C-australica_Contig_10.16.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2183bp|location=Sequence derived from alignment at C-australica_Contig_10:46871..49053+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_10:46871..49053+ >mRNA_C-australica_Contig_10.16.1 ID=mRNA_C-australica_Contig_10.16.1|Name=mRNA_C-australica_Contig_10.16.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=936bp|location=Sequence derived from alignment at C-australica_Contig_10:46871..49053+ (Chrysoparadoxa australica CS_1217)back to top |