mRNA_C-australica_Contig_10.14.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_10.14.1 vs. uniprot
Match: A0A836CFD2_9STRA (Mitochondrial carrier protein-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFD2_9STRA) HSP 1 Score: 305 bits (781), Expect = 5.510e-98 Identity = 156/288 (54.17%), Postives = 209/288 (72.57%), Query Frame = 1 Query: 208 AIAGGLAGAVATASLHPLDTAKTIKQANPGIFAGSWQAVQHVCKTKGPLALYAGVGTAIIGSMPSSALYFGAYEGVKRRLNEVLSKRWEGCP-----PESLRAPVSMVAAICGNAASSIIFAPKEFIKQSLQVSNSAGTGAAA--KALPLVSETIRTHGVQGLYRGYFACLKRNIPSAVLRFTLYEEFKVHLGDG---KPLQSSPKLLIAGALAGAIASGLTTPLDVLKTQVSTGRLPGDLGTIRGLTTIAQKSGWKSLYAGVQPRIVMSAMFTAIGFSSFDFFKHML 1041 A+AG +AGA++T +LHP+DTAKT++Q+NP F G+ QA+ H+ KT GP ++YAGVG A++GSMPSSALYFGAYE VK RL +RW G P +RA V +++A CGNAASS++F PKE++KQSLQ A A A+ LV T+R G++GLYRGY+A L RN+PSA+LRFTLYEE K+HL P + SP L+AGA+AGA+ASGLTTP DV+KTQV+TGRL +LG I+ LT + ++ G + LY G QPR+++S++FTA+GF SF+ K +L Sbjct: 2 ALAGAMAGAISTVTLHPIDTAKTLRQSNPQAFKGTIQALSHMLKTHGPGSIYAGVGAAVVGSMPSSALYFGAYESVKARLTRAAGRRWGGGSAQLVLPPGVRAGVHVISAACGNAASSLVFVPKEYVKQSLQAQKGAAMRGQATLNAVALVKATLRQQGIRGLYRGYWATLSRNVPSAILRFTLYEEIKLHLRPNLANMPGKLSPAFLLAGAVAGAVASGLTTPFDVVKTQVATGRLDRNLGVIKSLTKLGREGGIRGLYVGAQPRMLLSSLFTAVGFGSFEAMKTLL 289
BLAST of mRNA_C-australica_Contig_10.14.1 vs. uniprot
Match: D7G8X0_ECTSI (Mitochondrial carrier protein-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8X0_ECTSI) HSP 1 Score: 302 bits (774), Expect = 3.770e-96 Identity = 160/310 (51.61%), Postives = 213/310 (68.71%), Query Frame = 1 Query: 187 IVRDGKAAIAGGLAGAVATASLHPLDTAKTIKQANPGIFAGSWQAVQHVCKTKGPLALYAGVGTAIIGSMPSSALYFGAYEGVKRRLNEVLSKRWE---GCPPE-----------SLRAPVSMVAAICGNAASSIIFAPKEFIKQSLQVSNSAGTGAAAK-ALPLVSETIRTHGVQGLYRGYFACLKRNIPSAVLRFTLYEEFKVHLGDGKPLQSSPKLLIAGALAGAIASGLTTPLDVLKTQVSTGRLPGDLGTIRGLTTIAQKSGWKSLYAGVQPRIVMSAMFTAIGFSSFDFFKHML--DPVIAEEA 1065 +VRD K A+AG +AGA+ATA+L P+DTAKT++QANP F G+ A+ H+C+T+GP A+Y G+ TA++G+MPSSALYFG YE VK RL V + + G P E + RA VAA CGNAASS+IF PKE++KQ+LQ S G A + A +V T++ GV+GLYRGY+A L RN+PSA++RF+LYEE K+ +G + + + P L+AGALAGA ASG+TTP DVLKT+V+TG L G G + + TI GWK LYAG QPR+VMS +FTA+GF SF+ K +L P+ +EA Sbjct: 21 LVRDVKMAVAGAMAGAIATAALFPIDTAKTLRQANPKAFKGTRDALAHICRTRGPWAIYTGIPTAVVGAMPSSALYFGTYEAVKTRLMRVAANNFPAGPGGPREGEGXXXXXVHPAARAAAHAVAAACGNAASSLIFVPKEYVKQTLQASGMGAAGGARETAKEIVRRTVKEKGVKGLYRGYWATLSRNVPSAIIRFSLYEEIKLFIGPARLMSAPPAYLLAGALAGACASGMTTPFDVLKTRVATGSLEGGRGFAKNMATIVADDGWKGLYAGFQPRVVMSGLFTAVGFGSFEAIKVVLGVSPLPPDEA 330
BLAST of mRNA_C-australica_Contig_10.14.1 vs. uniprot
Match: A0A6H5JI22_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI22_9PHAE) HSP 1 Score: 306 bits (785), Expect = 4.280e-96 Identity = 161/313 (51.44%), Postives = 215/313 (68.69%), Query Frame = 1 Query: 187 IVRDGKAAIAGGLAGAVATASLHPLDTAKTIKQANPGIFAGSWQAVQHVCKTKGPLALYAGVGTAIIGSMPSSALYFGAYEGVKRRLNEVLSKRWE---GCPPE-----------SLRAPVSMVAAICGNAASSIIFAPKEFIKQSLQVSNSAGTGAAAK-ALPLVSETIRTHGVQGLYRGYFACLKRNIPSAVLRFTLYEEFKVHLGDGKPLQSSPKLLIAGALAGAIASGLTTPLDVLKTQVSTGRLPGDLGTIRGLTTIAQKSGWKSLYAGVQPRIVMSAMFTAIGFSSFDFFKHML--DPVIAEEAEVC 1074 +VRD K A+AG +AGA+ATA+L P+DTAKT++QANP F GS A+ H+C+T+GP A+Y G+ TA++G+MPSSALYFG YE VK RL V + + G P E + RA VAA CGNAASS+IF PKE++KQ+LQ S G A + A ++ T+R GV+GLYRGY+A L RN+PSA++RF+LYEE K+ +G + + + P L+AGALAGA ASG+TTP DVLKT+V+TG L G G ++ + TI GWK LYAG QPR+VMS +FTA+GF SF+ K +L P+ ++A V Sbjct: 149 LVRDVKMAVAGAMAGAIATAALFPIDTAKTLRQANPKAFKGSRDALAHICRTRGPWAIYTGIPTAVVGAMPSSALYFGTYEAVKTRLMRVAANNFPAGPGGPREGEGXXXXXVHPAARAAAHAVAAACGNAASSLIFVPKEYVKQTLQASGMGAVGGARETAKEIIRRTVREKGVRGLYRGYWATLSRNVPSAIIRFSLYEEIKLFIGPARLMSAPPAYLLAGALAGACASGMTTPFDVLKTRVATGSLEGGRGFVKNMATIVADDGWKGLYAGFQPRVVMSGLFTAVGFGSFEAIKAVLGVSPLPPDKATVA 461
BLAST of mRNA_C-australica_Contig_10.14.1 vs. uniprot
Match: A0A7R9UPS8_DIALT (Hypothetical protein (Fragment) n=3 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UPS8_DIALT) HSP 1 Score: 213 bits (542), Expect = 5.100e-62 Identity = 119/285 (41.75%), Postives = 179/285 (62.81%), Query Frame = 1 Query: 196 DGKAAIAGGLAGAVATASLHPLDTAKTIKQANPGIFAGSWQAVQHVCKTKGPLALYAGVGTAIIGSMPSSALYFGAYEGVKRRLNEVLSKRWEGCPPESL--RAPVSMVAAICGNAASSIIFAPKEFIKQSLQVSNSAGTGAAAKALPLVSETIRTHGVQGLYRGYFACLKRNIPSAVLRFTLYEEFKVHLG-DGKPLQSSPKLLIAGALAGAIASGLTTPLDVLKTQVSTGRLPGDLGTIRGLTTIAQKSGWKSLYAGVQPRIVMSAMFTAIGFSSFDFFKHML 1041 D + ++G LAGA+ LHPLDT KT++QAN F G+++ ++ + + GP LY G+GTA++G+MPSS ++FG YE +K RL + P SL RA + +V+A CGNAASS+IF PKE +KQ LQ + AG + + VS ++ HGV+GLY Y A + RNIP+ VL+F +YEE ++ L + + + GA++GA +S L TPLDV+KT+++TG+ LG R L +A + G L+AG + R+V +A+F+AIG S ++ K +L Sbjct: 20 DFRRGLSGSLAGALTNGLLHPLDTVKTVRQANRAQFPGTFRTIRRIWQQNGPRGLYGGLGTAMVGAMPSSFVFFGTYEFMKARLQALK-------PDCSLDERARIHVVSAACGNAASSLIFVPKEMVKQRLQAARVAGVSTGVRQV--VSTIVKEHGVRGLYAAYSATIMRNIPTTVLKFLIYEELRLRLAASDESATLRVRSMACGAISGACSSVLMTPLDVVKTRLATGQYAATLGMRRSLVKLATEEGLSGLFAGAKARMVGAALFSAIGLSCYEACKQLL 295
BLAST of mRNA_C-australica_Contig_10.14.1 vs. uniprot
Match: A0A7S2STS4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STS4_9STRA) HSP 1 Score: 211 bits (538), Expect = 3.780e-61 Identity = 126/305 (41.31%), Postives = 183/305 (60.00%), Query Frame = 1 Query: 202 KAAIAGGLAGAVATASLHPLDTAKTIKQANPGIFAGSWQAVQHVCKTKGPLALYAGVGTAIIGSMPSSALYFGAYEGVKRRLNEVLSKRWE---------------GCPPES-LRAPVSMVAAICGNAASSIIFAPKEFIKQSLQVSNS-AGTGAAAKALPLVSETIRTHGVQGLYRGYFACLKRNIPSAVLRFTLYEEFKVHLGDGKPLQSSPKLLIAGALAGAIASGLTTPLDVLKTQVSTGRLPGDLGTIRGLTTIAQKSGWKSLYAGVQPRIVMSAMFTAIGFSSFDFFKHMLDPVIAEEA 1065 ++A+AG +AG V LHPLDT KT++Q +P + + A+ +T+G ALY GV A IG+MPSSALYFG Y+ VKRRL ++ R + G P ES +R V M AA+CGNAASS++F PKEF+KQ LQ + G G A + +V+ T++T GV +Y GY A L RNIPSA +RF +YEE K+ L + +AGA++G +AS TTP+DV+KT+ +TG L G + + + ++ G L G+Q RI+ S +F++IGF++F+ K +L + +A Sbjct: 31 RSALAGAIAGGVTNTILHPLDTCKTLRQRHPQQYKSTLAALSSTLRTRGIGALYRGVIPAAIGAMPSSALYFGFYDIVKRRLTRFVANRDQQVNSRGGXXXXXXQGGSPLESGIRPVVHMTAAVCGNAASSLVFVPKEFVKQQLQTNTKYRGLGGAFQ---VVAHTVKTKGVGAVYAGYTATLLRNIPSAAIRFVIYEEAKILLESRLGSVGPREFFLAGAVSGLVASSCTTPMDVMKTKFATGALDRSRGLLTCVAEVVRREGAVGLLTGLQGRILWSTLFSSIGFAAFESAKSVLGVPSSSQA 332
BLAST of mRNA_C-australica_Contig_10.14.1 vs. uniprot
Match: A0A4D9D8F7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8F7_9STRA) HSP 1 Score: 208 bits (529), Expect = 5.430e-60 Identity = 135/298 (45.30%), Postives = 181/298 (60.74%), Query Frame = 1 Query: 208 AIAGGLAGAVATASLHPLDTAKTIKQANPGIFAGSWQAVQHVCKTKGPLALYAGVGTAIIGSMPSSALYFGAYEGVKRRLNEVLSKRWEGCPPESL---------RAPV------SMVAAICGNAASSIIFAPKEFIKQSLQVSNSAGTGAAAKALPLVSETIRTHGVQGLYRGYFACLKRNIPSAVLRFTLYEEFKVHLGD----GKPLQSSPKL-LIAGALAGAIASGLTTPLDVLKTQVSTGRLPGDLGTIRGLTTIAQKSGWKSLYAGVQPRIVMSAMFTAIGFSSFDFFKHML 1041 A+AG LAG + L+P+D AKT++QA P A ++ + G +L+AG+ A++GSMPSSALYFG YE VKRRL + R E S RA V +AA GN ASS+IF PKE +KQ LQ+ +A GA+ + + +R GV+GLY GY A L RNIPSAVLRF LYEEFK++LG G S P++ ++AGALAGA++S TTPLDV+KT+++ P + L +AQK G LYAGV+ R++ SA+FTA+GFSSF+ K +L Sbjct: 8 ALAGALAGGFSNMVLYPIDVAKTLRQAGP---ASRGASLSSQARIYGLGSLWAGLTPAVLGSMPSSALYFGVYEYVKRRLVAGIRPRTEASSSVSSDGSKELYQRRAQVLRRWTAHALAAAAGNTASSLIFVPKEVLKQQLQMYRNAHGGASLGFPGVFASILREKGVRGLYSGYRATLLRNIPSAVLRFALYEEFKLYLGGQALWGAISLSGPRVAVVAGALAGALSSAATTPLDVIKTRMAINACPPGRDVLGCLLDVAQKEGVPGLYAGVRFRVMYSALFTAVGFSSFEASKALL 302
BLAST of mRNA_C-australica_Contig_10.14.1 vs. uniprot
Match: A0A2V3J0Y3_9FLOR (Protein MITOFERRINLIKE 1, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0Y3_9FLOR) HSP 1 Score: 207 bits (526), Expect = 1.690e-59 Identity = 123/283 (43.46%), Postives = 174/283 (61.48%), Query Frame = 1 Query: 208 AIAGGLAGAVATASLHPLDTAKTIKQANPGIFAGSWQAVQHVCKTKGPLALYAGVGTAIIGSMPSSALYFGAYEGVKRRLNEVLSKRWEGCPPESLRAPVSMVAAICGNAASSIIFAPKEFIKQSLQVSNSAGT--GAAAKALPLVSETIRTHGVQGLYRGYFACLKRNIPSAVLRFTLYEEFKVHL------GDGKPLQSSPKLLIAGALAGAIASGLTTPLDVLKTQVSTGRLPGDLGTIRGLTTIAQKSGWKSLYAGVQPRIVMSAMFTAIGFSSFDFFK 1032 A AGG+AG + LHPLDT KT++QA+P F G + + +T+GP ALYAG+ A+IGS SSALYFGAYE VK L ++ ++ P + R P++ ++A CGN ASS++F PKE +KQ +Q + G GAA L G+ GLYRGY A L RNIPS +LRF +YEE K+ + KPL + P+++ AG++AG +S TTP+DVLKT+ +TG + + + I + G L+ G++PRIV +A+F AIGFSS++ K Sbjct: 23 AAAGGMAGMLTNTLLHPLDTVKTVRQADPTHFRGMAPTLLKIIRTRGPFALYAGIVPALIGSAFSSALYFGAYEMVKGALAQMSPYSFQ--KPRT-RIPLTALSAACGNVASSVLFVPKEVVKQRMQSAVDPGNFFGAAKNVLA-------ASGISGLYRGYKATLLRNIPSTMLRFAIYEEAKLAIRRLKRENSDKPL-TFPEVIAAGSIAGVASSACTTPMDVLKTRFATGAIKPGTAILPAIRDIVGRDGVPGLFVGIRPRIVWAALFAAIGFSSYEVCK 294
BLAST of mRNA_C-australica_Contig_10.14.1 vs. uniprot
Match: W7TPC7_9STRA (S-adenosylmethionine carrier 1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TPC7_9STRA) HSP 1 Score: 209 bits (531), Expect = 4.900e-59 Identity = 137/315 (43.49%), Postives = 185/315 (58.73%), Query Frame = 1 Query: 208 AIAGGLAGAVATASLHPLDTAKTIKQANPGIFAGSWQAVQHVCKTKGPLALYAGVGTAIIGSMPSSALYFGAYEGVKRRLNEVLSKRWEGCPPESL---------------RAPVSMVAAICGNAASSIIFAPKEFIKQSLQVSNSAGTGAAAKALPLVSETIRTHGVQGLYRGYFACLKRNIPSAVLRFTLYEEFKVHLG----DGKPLQSSPKL-LIAGALAGAIASGLTTPLDVLKTQVSTGRLPGDLGTIRGLTTIAQKSGWKSLYAGVQPRIVMSAMFTAIGFSSFDFFKHMLDPVIAEEAEVCKK*GQN 1092 A+AG LAG + L+P+D AKT++QA P A ++ + G +L+AG+ A++GSMPSSALYFG YE VKRRL + R E S R +AA GN ASS+IF PKE +KQ LQ+ +A GA+ + + +R GV+GLY GY A L RNIPSAVLRF LYEEFK++LG G S P++ ++AGALAGA++S TTPLDV+KT+++ P + L +AQK G LYAGV+ R++ SA+FTA+GFSSF+ K +L A E K G++ Sbjct: 115 ALAGALAGGFSNMVLYPIDVAKTLRQAGP---ASRGASLSSQARIYGLGSLWAGLTPAVLGSMPSSALYFGVYEYVKRRLVAGIRPRTEASSSISSDGSKELYHRRVQVLRRWTAHALAAAAGNTASSLIFVPKEVLKQQLQMYRNAHGGASLGFPGVFASILREKGVRGLYSGYRATLLRNIPSAVLRFALYEEFKLYLGGQALSGAISLSGPRVAVVAGALAGALSSAATTPLDVIKTRMAINACPPGRDVLGCLLDVAQKEGVPGLYAGVRFRVMYSALFTAVGFSSFEASKALLGVGEAGGEEDAKGSGRH 426
BLAST of mRNA_C-australica_Contig_10.14.1 vs. uniprot
Match: A0A7S2DQE7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DQE7_9STRA) HSP 1 Score: 194 bits (493), Expect = 1.640e-55 Identity = 109/232 (46.98%), Postives = 153/232 (65.95%), Query Frame = 1 Query: 196 DGKAAIAGGLAGAVATASLHPLDTAKTIKQANPGIFAGSWQAVQHVCKTKGPLALYAGVGTAIIGSMPSSALYFGAYEGVKRRLNEVLSKRWEGCPPESL-------RAPVSMVAAICGNAASSIIFAPKEFIKQSLQVSNSAGTGAAAKALPLVSETIRTHGVQGLYRGYFACLKRNIPSAVLRFTLYEEFKVHLGDG-KPLQSSPKLLIAGALAGAIASGLTTPLDVLKT 867 D ++A+AGGLAG+ T LHPLDTAK ++Q NP +AG+ QA+ + +G LY+G+ + +GS+PSSALYFG YE VKRRL L++ + E + R + +V+A GNA SS++F PKEF+KQ LQ +++ G A L ++ T++T G+ GLY GY A L RNIPSA +RF LYEE KV G + SS K L+AGA++G ++SG+TTP+DV+KT Sbjct: 23 DIRSALAGGLAGSFTTGILHPLDTAKVLRQKNPTQYAGTLQALVVTARERGIRPLYSGLWASALGSLPSSALYFGTYECVKRRLY-ALARGCQDAQDEGVARVSARVRPAIHLVSAASGNAVSSLLFVPKEFVKQQLQTASALTNGGKASTLGVIRTTLKTRGIGGLYAGYGATLLRNIPSAGIRFILYEELKVLFGASCDDINSSLKFLLAGAMSGIVSSGITTPMDVIKT 253
BLAST of mRNA_C-australica_Contig_10.14.1 vs. uniprot
Match: A0A1Z5JCJ0_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JCJ0_FISSO) HSP 1 Score: 195 bits (496), Expect = 3.110e-54 Identity = 120/279 (43.01%), Postives = 165/279 (59.14%), Query Frame = 1 Query: 217 GGLAGAVATASLHPLDTAKTIKQANPGIFAGSWQAVQHVCKTKGPLALYAGVGTAIIGSMPSSALYFGAYEGVKRRLNEVLSKRWEGCPPESL--RAPVSMVAAICGNAASSIIFAPKEFIKQSLQVSNSAGTGAAAKALPLVSETIRTHGVQGLYRGYFACLKRNIPSAVLRFTLYEEFK--VHLGDGKPLQSSPKLLIAGALAGAIASGLTTPLDVLKTQVSTGRLPGDLGTIRGLTTIAQKSGWKSLYAGVQPRIVMSAMFTAIGFSSFDFFKHML 1041 GG+AGAV T L+P+D+AKT++QANP F W A+ + Y GV A +G++P+SALYFGAYE +K L +V +R P ++ R + AA GN SS+IF PKEFIKQ LQ +S + + HG++GLYRGY A L RNIPSA LRF LYEE K ++ G+ S +L AGA++GA+ASG TP+DVLKT++S G+ P DL + +GW +LYAG R++ S +F+A GF +F+ K + Sbjct: 126 GGIAGAVGTTLLYPIDSAKTLRQANPEQFPSVWAALWSSRQW------YRGVVPAAVGAIPASALYFGAYEAMKSLLLQVQVQRQPAHQPPTVSSRLLLHASAAASGNILSSMIFVPKEFIKQQLQYGSSTS----------IQHCLAQHGLRGLYRGYQATLLRNIPSAALRFVLYEELKYALYTSRGEEAVGSWRLFAAGAVSGALASGFLTPMDVLKTRMSVGQCPVDLPGC--FHHVLDTAGWTALYAGAGSRMLFSGLFSAAGFGTFETVKRWM 386 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_10.14.1 >prot_C-australica_Contig_10.14.1 ID=prot_C-australica_Contig_10.14.1|Name=mRNA_C-australica_Contig_10.14.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=334bp MRLQILLLVAQLAWSALGSRSAQPAVAVAPADRWAIVRDGKAAIAGGLAGback to top mRNA from alignment at C-australica_Contig_10:41091..43794- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_10.14.1 ID=mRNA_C-australica_Contig_10.14.1|Name=mRNA_C-australica_Contig_10.14.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2704bp|location=Sequence derived from alignment at C-australica_Contig_10:41091..43794- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_10:41091..43794- >mRNA_C-australica_Contig_10.14.1 ID=mRNA_C-australica_Contig_10.14.1|Name=mRNA_C-australica_Contig_10.14.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1002bp|location=Sequence derived from alignment at C-australica_Contig_10:41091..43794- (Chrysoparadoxa australica CS_1217)back to top |