mRNA_C-tenellus_contig10369.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10369.1.1
Unique NamemRNA_C-tenellus_contig10369.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10369.1.1 vs. uniprot
Match: A0A4C1WQX8_EUMVA (Uncharacterized protein n=2 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1WQX8_EUMVA)

HSP 1 Score: 141 bits (356), Expect = 1.320e-38
Identity = 92/183 (50.27%), Postives = 108/183 (59.02%), Query Frame = 1
Query:    4 LFLDSMGGGAWPFLVDTLAHCLVNSSNKRGPCLLNRGAYACTWG---------------------------NNRPVMPFDVLGRTRATLMHATRFV*PWSRDPGNLLNVHRDRDRSLQLLILNKEFLVNASHQLALITSLPFVHTAHHTYRLNVSVKILNRVAGA-SLLPHRGKLSELQYLEE 468
            LFLDS+GGGAWPFLV   A CLVNS N+R   LLNR  ++   G                           NNR VMP DVLGRTRATL  +     PW R PGN L + R  D  LQL  +N+EFLV+ASH+LALITSLPFVHTA   YRLN  V+  +R A A S +   GKL++L +LEE
Sbjct:   48 LFLDSVGGGAWPFLVGG-AICLVNSGNERDSSLLNRRRHSGVRGVRVARLTGGVIKIFLEGPAASSRTRLSNNRSVMPLDVLGRTRATLKESACS--PWPRGPGNPLKLLRAGDWGLQLSPINEEFLVSASHKLALITSLPFVHTARRYYRLNDLVRSSDRHAVALSAVGVAGKLTKLDHLEE 227          
BLAST of mRNA_C-tenellus_contig10369.1.1 vs. uniprot
Match: A0A425BZS1_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A425BZS1_9STRA)

HSP 1 Score: 137 bits (344), Expect = 1.850e-38
Identity = 81/129 (62.79%), Postives = 87/129 (67.44%), Query Frame = 1
Query:   19 MGGGAWPFLVDTLAHCLVNSSNKRGPCLLNRGAYAC----TWGNNRPVMPFDVLGRTRATLMHATRFV*PWSRDPGNLLNVHRDRDRSLQLLILNKEFLVNASHQLALITSLPFVHTAHHTYRLNVSVK 393
            MGGGAWPFLV  +  CLVNS N+R    L R  +        GNNR VM  DVLGRTRATLM +T          GNLLN HR RDR LQ  +LN+EFLVNASHQLALITSLPFVHTA  TYRLN SVK
Sbjct:    1 MGGGAWPFLVGGVI-CLVNSVNERD---LRRDFWVIKPKEVGGNNRSVMLLDVLGRTRATLMRSTSL--------GNLLNAHRARDRLLQFSVLNEEFLVNASHQLALITSLPFVHTARRTYRLNDSVK 117          
BLAST of mRNA_C-tenellus_contig10369.1.1 vs. uniprot
Match: A0A7M7L1S7_VARDE (Uncharacterized protein n=1 Tax=Varroa destructor TaxID=109461 RepID=A0A7M7L1S7_VARDE)

HSP 1 Score: 134 bits (338), Expect = 2.650e-37
Identity = 83/162 (51.23%), Postives = 97/162 (59.88%), Query Frame = 1
Query:   10 LDSMGGGAWPFLVDTLAHCLVNSSNKRGPCLLNR----------------GAYACTWGNNRPVMPFDVLGRTRATLMHATRFV*PWSRDPGNLLNVHRDRDRSLQLLILNKEFLVNASHQLALITSLPFVHTAHHTYRLNVSVKILN----RVAGASLLPHR 435
            LDS+GGGAWPFLV   A CLVNS N+R   LLNR                 +      NNR VMP DVLGRTRATL  +  F  PW + PGN LN+ R RD  LQL  +N+EF V+ASH+LALITSLPFVHTA   YRLN  V+  +     V+   +LP R
Sbjct:    1 LDSVGGGAWPFLVGG-AICLVNSDNERDSSLLNRRNLWYLEGPRLRSEQAASSRTRLSNNRSVMPLDVLGRTRATLKESACF--PWPKGPGNPLNLLRARDWGLQLFPMNEEFPVSASHKLALITSLPFVHTARRYYRLNDLVRSSDWCAANVSALPMLPGR 159          
BLAST of mRNA_C-tenellus_contig10369.1.1 vs. uniprot
Match: A0A2T5LKN2_9EURO (Uncharacterized protein n=1 Tax=Aspergillus ochraceoroseus IBT 24754 TaxID=1392256 RepID=A0A2T5LKN2_9EURO)

HSP 1 Score: 121 bits (304), Expect = 1.270e-32
Identity = 66/120 (55.00%), Postives = 77/120 (64.17%), Query Frame = 1
Query:  133 GNNRPVMPFDVLGRTRATLMHATRFV*PWSRDPGNLLNVHRDRDRSLQLLILNKEFLVNASHQLALITSLPFVHTAHHTYRLNVSVKILNRVAGASLLPHRGKLSELQYLEEGEAITRFP 492
            GNNR VMP DVLGRTRATL        PW R  GNL+   R  DR+LQLL+ N+E LV  SHQL  ITSLPFVHTA   YRLN SV++     G +  P  GKL +  +LEE + +TRFP
Sbjct:    5 GNNRSVMPLDVLGRTRATLTGPASTS-PWPRGLGNLVKPCRAGDRALQLLLFNEECLVGTSHQLVPITSLPFVHTARRYYRLNGSVRLRTGAGGLATTPRAGKLVKPGHLEEVKVVTRFP 123          
BLAST of mRNA_C-tenellus_contig10369.1.1 vs. uniprot
Match: M2Y7R4_GALSU (Uncharacterized protein n=2 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y7R4_GALSU)

HSP 1 Score: 112 bits (279), Expect = 1.410e-28
Identity = 70/138 (50.72%), Postives = 81/138 (58.70%), Query Frame = 1
Query:   19 MGGGAWPFLVDTLAHCLVNSSNKRGPCLLN-------------RGAYACT----WGNNRPVMPFDVLGRTRATLMHATRFV*PWSRDPGNLLNVHRDRDRSLQLLILNKEFLVNASHQLALITSLPFVHTAHHTYRLN 381
            MGGGAWPFLV  +  CLVNS N+R   LL              RG    +     GNNR VMPFDVLG TRATLM +     P+ R     L +HR    +   + +N+EFLVNASHQLAL TSLPFVHTA  +YRLN
Sbjct:    1 MGGGAWPFLVGGVI-CLVNSVNERDLFLLTSYIVCEDIRYILLRGTIRFSRMEVLGNNRCVMPFDVLGCTRATLMRSNSCKRPFLRRVWQTLKLHRAVGLNTVTVFMNEEFLVNASHQLALNTSLPFVHTARRSYRLN 137          
BLAST of mRNA_C-tenellus_contig10369.1.1 vs. uniprot
Match: A0A7R9S4B3_9CRUS (Hypothetical protein (Fragment) n=1 Tax=Argulus foliaceus TaxID=509924 RepID=A0A7R9S4B3_9CRUS)

HSP 1 Score: 110 bits (275), Expect = 4.500e-28
Identity = 65/121 (53.72%), Postives = 80/121 (66.12%), Query Frame = 1
Query:  133 GNNRPVMPFDVLGRTRATLMHATRFV*PWSRDPGNLLNVHRDRDRSLQLLILNKEFLVNASHQLALITSLPFVHTAHHTYRLNVSVKILNRVAG---ASLLPHRGKLSELQYLEEGEAITR 486
            GNNR VMP DVLGRTRATL  +T    P  R PGN  N+ RDRD  LQL  +N+EF V+ASH+LALITSLPFVHTA   YRLN  V+  +R       ++     K+S+L +LEE + +TR
Sbjct:   18 GNNRSVMPLDVLGRTRATLKESTWS--PSPRGPGNPRNLLRDRDWGLQLQPMNEEFPVSASHKLALITSLPFVHTARRYYRLNDLVRTSDRCPSWLFGAIRCSTMKISKLDHLEEVKVVTR 136          
BLAST of mRNA_C-tenellus_contig10369.1.1 vs. uniprot
Match: A0A4C1WQY2_EUMVA (Uncharacterized protein n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1WQY2_EUMVA)

HSP 1 Score: 114 bits (285), Expect = 1.350e-27
Identity = 76/156 (48.72%), Postives = 96/156 (61.54%), Query Frame = 1
Query:    4 LFLDSMGGGAWPFLVDTLAHCLVNSSNKRGPCLLNRGAYACTWGNNRPVMPFDVLGRTRATLMHATRFV*PWSRDPGNLLNVHRDRDRSLQLLILNKEFLVNASHQLALITSLPFVHTAHHTYRLNVSVKILNRVAGA-SLLPHRGKLSELQYLEE 468
            LFLDS+GGGAWPFLV   A CLVNS N+R   LLNR  ++   G     +   V+         ++R     +R PGN L + R  D  LQL  +N+EFLV+ASH+LALITSLPFVHTA   YRLN  V+  +R A A S +   GKL++L +LEE
Sbjct:  125 LFLDSVGGGAWPFLVGG-AICLVNSGNERDSSLLNRRRHSGVRGVRVARLTGGVIKIFLEGPAASSRTRLSNNRGPGNPLKLLRAGDWGLQLSPINEEFLVSASHKLALITSLPFVHTARRYYRLNDLVRSSDRHAVALSAVGVAGKLTKLDHLEE 279          
BLAST of mRNA_C-tenellus_contig10369.1.1 vs. uniprot
Match: L1IHC2_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IHC2_GUITC)

HSP 1 Score: 105 bits (261), Expect = 3.390e-26
Identity = 65/125 (52.00%), Postives = 75/125 (60.00%), Query Frame = 1
Query:   19 MGGGAWPFLVDTLAHCLVNSSNKRGPCLLNRGAYACTWGNNRPVMPFDVLGRTRATLMHATRFV*PWSRDPGNLLNVHRDRDRSLQLLILNKEFLVNASHQLALITSLPFVHTAHHTYRLNVSVK 393
            MGGGAWPFLV  +  CLVNS N+R   LL              +   D  G  R T+      + P  +  G L+ VHRD DR LQLLI N+EFLV+ASHQLALITSLPFVHTA  +YRLN  VK
Sbjct:    1 MGGGAWPFLVGGVI-CLVNSVNERDLSLLTS------------IANIDWRGLLRGTIC-----LDPEPKGLGKLVKVHRDGDRLLQLLIFNEEFLVSASHQLALITSLPFVHTARRSYRLNGPVK 107          
BLAST of mRNA_C-tenellus_contig10369.1.1 vs. uniprot
Match: Q0PWU6_DIACI (Ac1147-like protein (Fragment) n=2 Tax=Psylloidea TaxID=33375 RepID=Q0PWU6_DIACI)

HSP 1 Score: 104 bits (259), Expect = 6.990e-26
Identity = 58/97 (59.79%), Postives = 67/97 (69.07%), Query Frame = 1
Query:  136 NNRPVMPFDVLGRTRATLMHATRFV*PWSRDPGNLLNVHRDRDRSLQLLILNKEFLVNASHQLALITSLPFVHTAHHTYRLNVSVKILNRVAGASLL 426
            NNR VMP DVLGRTRATL  + R   P  R  GN LN+ RDRDR LQ   +N+EF V+ASH+LALITSLPFVHTA   YRLN  V+  +R A   L+
Sbjct:   11 NNRSVMPLDVLGRTRATLKESARPT-PGPRGSGNPLNLLRDRDRGLQFFPVNEEFPVSASHKLALITSLPFVHTARRYYRLNDLVRSSDRCADGRLV 106          
BLAST of mRNA_C-tenellus_contig10369.1.1 vs. uniprot
Match: K5WER6_AGABU (Uncharacterized protein n=9 Tax=Dikarya TaxID=451864 RepID=K5WER6_AGABU)

HSP 1 Score: 103 bits (257), Expect = 1.020e-25
Identity = 54/86 (62.79%), Postives = 62/86 (72.09%), Query Frame = 1
Query:  136 NNRPVMPFDVLGRTRATLMHATRFV*PWSRDPGNLLNVHRDRDRSLQLLILNKEFLVNASHQLALITSLPFVHTAHHTYRLNVSVK 393
            NNR VMP DVLGRTRATL     F  PW    GNL+ + R  DR+LQLL+ N+E+LV+ SHQLALITSLPFVHTA   YRLN  V+
Sbjct:    6 NNRSVMPLDVLGRTRATLTEPASFS-PWPEGLGNLVKLCRAGDRALQLLLFNEEYLVSVSHQLALITSLPFVHTARRYYRLNGLVR 90          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10369.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4C1WQX8_EUMVA1.320e-3850.27Uncharacterized protein n=2 Tax=Eumeta variegata T... [more]
A0A425BZS1_9STRA1.850e-3862.79Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
A0A7M7L1S7_VARDE2.650e-3751.23Uncharacterized protein n=1 Tax=Varroa destructor ... [more]
A0A2T5LKN2_9EURO1.270e-3255.00Uncharacterized protein n=1 Tax=Aspergillus ochrac... [more]
M2Y7R4_GALSU1.410e-2850.72Uncharacterized protein n=2 Tax=Galdieria sulphura... [more]
A0A7R9S4B3_9CRUS4.500e-2853.72Hypothetical protein (Fragment) n=1 Tax=Argulus fo... [more]
A0A4C1WQY2_EUMVA1.350e-2748.72Uncharacterized protein n=1 Tax=Eumeta variegata T... [more]
L1IHC2_GUITC3.390e-2652.00Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
Q0PWU6_DIACI6.990e-2659.79Ac1147-like protein (Fragment) n=2 Tax=Psylloidea ... [more]
K5WER6_AGABU1.020e-2562.79Uncharacterized protein n=9 Tax=Dikarya TaxID=4518... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10369contigC-tenellus_contig10369:13..810 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog121225.PHUM205210-PA
Model size492
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons3
Evalue6.35e-12
EggNOG OGs2CY47@1|root,2S1X0@2759|Eukaryota,3A4N9@33154|Opisthokonta,3BQU8@33208|Metazoa,3E42U@33213|Bilateria,423II@6656|Arthropoda,3SZQC@50557|Insecta,3EECF@33342|Paraneoptera
Cds size195
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789127.8934555-UTR-C-tenellus_contig10369:12..301680789127.8934555-UTR-C-tenellus_contig10369:12..30Choristocarpus tenellus KU2346UTRC-tenellus_contig10369 13..30 +
1680789127.9301035-UTR-C-tenellus_contig10369:531..8101680789127.9301035-UTR-C-tenellus_contig10369:531..810Choristocarpus tenellus KU2346UTRC-tenellus_contig10369 532..810 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789127.9023945-CDS-C-tenellus_contig10369:30..611680789127.9023945-CDS-C-tenellus_contig10369:30..61Choristocarpus tenellus KU2346CDSC-tenellus_contig10369 31..61 +
1680789127.912706-CDS-C-tenellus_contig10369:319..3981680789127.912706-CDS-C-tenellus_contig10369:319..398Choristocarpus tenellus KU2346CDSC-tenellus_contig10369 320..398 +
1680789127.9220312-CDS-C-tenellus_contig10369:446..5311680789127.9220312-CDS-C-tenellus_contig10369:446..531Choristocarpus tenellus KU2346CDSC-tenellus_contig10369 447..531 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10369.1.1prot_C-tenellus_contig10369.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10369 31..531 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10369.1.1

>prot_C-tenellus_contig10369.1.1 ID=prot_C-tenellus_contig10369.1.1|Name=mRNA_C-tenellus_contig10369.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=65bp
MGGGAWPFLVDTLAHCLVNSSNKRGPCLLNRGAYACTWGNNRPVMPFDVL
GRTRATLMHATRFV*
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mRNA from alignment at C-tenellus_contig10369:13..810+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10369.1.1 ID=mRNA_C-tenellus_contig10369.1.1|Name=mRNA_C-tenellus_contig10369.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=798bp|location=Sequence derived from alignment at C-tenellus_contig10369:13..810+ (Choristocarpus tenellus KU2346)
GAGCTCTTTCTTGATTCTATGGGTGGTGGTGCATGGCCGTTCTTAGTTGG TAGAGTGATTGGAGTGAAAGTATCTTAGAGGGTACGAGTTTTGCCCTATT TGTCCATTTGGGGCTTGACTTCTCATGTTTTTTTTTAAATGTCTTTTTCC TACTTTGAAATATTTGGAGTACGTAAAATGTATGTTATGAAAAGGTGTGT CTAGAACAAGGATATTGACACTTCCTGACAAACAGGCTAGTCAAATTTTC ATCAAAATCGCAACATTGGATTTTGACCTCAAAATGGACGCGCCTCTACC CTCTAAGATACTCTGGCTCATTGTCTGGTTAATTCCAGTAACAAACGAGG CCCCTGCCTGCTAAATAGGGGGGCGTACGCTTGCACGTAGGCGCCCGCTT CTTAGAAGGGCTTTCGTTGACTAACCGAAGGAAGTTGGGGCAATAACAGA CCTGTGATGCCCTTTGATGTCCTGGGCCGCACACGCGCTACACTGATGCA TGCAACGAGATTCGTTTGACCTTGGTCGAGAGACCCAGGAAATCTGTTGA ACGTGCATCGTGATAGGGATAGATCATTGCAATTATTGATCTTGAACAAG GAATTCCTAGTAAACGCGAGTCATCAGCTGGCATTGATTACGTCCCTGCC CTTTGTACACACCGCCCATCACACCTACCGATTGAATGTTTCAGTGAAGA TTCTGAACCGTGTTGCAGGAGCTTCGCTGCTGCCACACCGTGGGAAGTTA TCTGAACTTCAATATTTAGAGGAAGGTGAAGCTATAACAAGGTTTCCG
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Coding sequence (CDS) from alignment at C-tenellus_contig10369:13..810+

>mRNA_C-tenellus_contig10369.1.1 ID=mRNA_C-tenellus_contig10369.1.1|Name=mRNA_C-tenellus_contig10369.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=195bp|location=Sequence derived from alignment at C-tenellus_contig10369:13..810+ (Choristocarpus tenellus KU2346)
ATGGGTGGTGGTGCATGGCCGTTCTTAGTTGATACTCTGGCTCATTGTCT
GGTTAATTCCAGTAACAAACGAGGCCCCTGCCTGCTAAATAGGGGGGCGT
ACGCTTGCACTTGGGGCAATAACAGACCTGTGATGCCCTTTGATGTCCTG
GGCCGCACACGCGCTACACTGATGCATGCAACGAGATTCGTTTGA
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