mRNA_C-tenellus_contig1036.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1036.3.1
Unique NamemRNA_C-tenellus_contig1036.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1036.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1036contigC-tenellus_contig1036:6062..6999 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size298
Hectar predicted targeting categoryother localisation
Exons2
Cds size297
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789127.423248-CDS-C-tenellus_contig1036:6061..62191680789127.423248-CDS-C-tenellus_contig1036:6061..6219Choristocarpus tenellus KU2346CDSC-tenellus_contig1036 6062..6219 +
1680789127.4373899-CDS-C-tenellus_contig1036:6859..69981680789127.4373899-CDS-C-tenellus_contig1036:6859..6998Choristocarpus tenellus KU2346CDSC-tenellus_contig1036 6860..6998 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1036.3.1prot_C-tenellus_contig1036.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1036 6062..6998 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1036.3.1

>prot_C-tenellus_contig1036.3.1 ID=prot_C-tenellus_contig1036.3.1|Name=mRNA_C-tenellus_contig1036.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=99bp
VESGNALDEGVIHTTSSNSGNIKSVPLESAIAADRDTRGGNGRPCMITPE
KTSRKKLQSPPWPSDGRKEFLRSFIERNRSQMWMYDPSFVGVDHKTAYK
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mRNA from alignment at C-tenellus_contig1036:6062..6999+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1036.3.1 ID=mRNA_C-tenellus_contig1036.3.1|Name=mRNA_C-tenellus_contig1036.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=938bp|location=Sequence derived from alignment at C-tenellus_contig1036:6062..6999+ (Choristocarpus tenellus KU2346)
GTCGAGTCGGGCAATGCTTTGGATGAGGGTGTGATTCATACCACAAGCAG
TAATTCAGGAAATATTAAAAGCGTTCCCTTGGAAAGCGCAATCGCAGCTG
ATCGAGATACACGGGGGGGAAATGGGCGACCTTGCATGATTACGCCTGAG
AAAACAAGGTATTTGTACCCCTGTCTTGAGTGTATTCCCGGGTCATATGT
ATCATCTACTTCAAGACTGCAATCATAGTTCAACACTAACAAACCACTGG
TGGAGGTCGAGCCCATGGGAGCTCCGGAAGACCACTTTCACCCTCCATCA
GAGGCTCACTATTGTGCTAGGGATAAACTGTCTACTTGGATTCACAAACT
TTATTAATGCCTTTACGAGTGCCCTCTATGACAATGAGGAATATCTTGAA
GCACAGGACGCTCCCTGGAATAACACAAAAAGTGCTAATAATCGACTGAG
TTGAACGAATTCACAAAGGCATTTCCTGAATATCACTTGAAGAGATATAG
GCCAGAAAGTATGTGACACACTTGTTGCTACGTAACAAATCCCTTACTTT
ACCGGAGATTGTCACCATTTTGTCGCATGAGTAAGCCTGAAAATATGTTT
AAACTTGTTTTCATTTCATCTGGTCATGTCTTTTGAAATTGCTGTACTCC
GATATTTCGGTTGGTGAGCTCTGTGGATTTCCAGTTGGAAGATGCGAGGT
CAAGTTTGTTCAAGCGAAAACATTTGTGGTGCATCTAAAACAATCTATAT
CTTGACCGACACATGCACCTTCAATCCCCAAATGCAATCTATATACAGTA
GGAAGAAATTGCAGAGCCCACCCTGGCCATCTGATGGACGGAAAGAGTTT
CTTCGCTCCTTCATTGAGAGGAACCGATCACAAATGTGGATGTATGACCC
TTCCTTTGTTGGAGTGGACCACAAGACTGCATACAAGC
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Coding sequence (CDS) from alignment at C-tenellus_contig1036:6062..6999+

>mRNA_C-tenellus_contig1036.3.1 ID=mRNA_C-tenellus_contig1036.3.1|Name=mRNA_C-tenellus_contig1036.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=297bp|location=Sequence derived from alignment at C-tenellus_contig1036:6062..6999+ (Choristocarpus tenellus KU2346)
GTCGAGTCGGGCAATGCTTTGGATGAGGGTGTGATTCATACCACAAGCAG
TAATTCAGGAAATATTAAAAGCGTTCCCTTGGAAAGCGCAATCGCAGCTG
ATCGAGATACACGGGGGGGAAATGGGCGACCTTGCATGATTACGCCTGAG
AAAACAAGTAGGAAGAAATTGCAGAGCCCACCCTGGCCATCTGATGGACG
GAAAGAGTTTCTTCGCTCCTTCATTGAGAGGAACCGATCACAAATGTGGA
TGTATGACCCTTCCTTTGTTGGAGTGGACCACAAGACTGCATACAAG
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