mRNA_C-tenellus_contig10358.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10358.2.1
Unique NamemRNA_C-tenellus_contig10358.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10358.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10358contigC-tenellus_contig10358:1188..1721 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size535
Hectar predicted targeting categoryother localisation
Exons1
Cds size387
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789127.1993675-CDS-C-tenellus_contig10358:1187..15741680789127.1993675-CDS-C-tenellus_contig10358:1187..1574Choristocarpus tenellus KU2346CDSC-tenellus_contig10358 1188..1574 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789127.2132392-UTR-C-tenellus_contig10358:1574..17211680789127.2132392-UTR-C-tenellus_contig10358:1574..1721Choristocarpus tenellus KU2346UTRC-tenellus_contig10358 1575..1721 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10358.2.1prot_C-tenellus_contig10358.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10358 1188..1574 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10358.2.1

>prot_C-tenellus_contig10358.2.1 ID=prot_C-tenellus_contig10358.2.1|Name=mRNA_C-tenellus_contig10358.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=129bp
MKFKSGQSIPWSRIPYSTWNHAYLGPEYEFQVRTICSLVQNTIFNLEPSV
PWSGIPHSLTQHSIFSTESKNVSSLSMYFFIASLKKKKKCDKGRYKLTFG
PFFSCLLGDGNPLFFCLVSSTPSFRVCLP
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mRNA from alignment at C-tenellus_contig10358:1188..1721-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10358.2.1 ID=mRNA_C-tenellus_contig10358.2.1|Name=mRNA_C-tenellus_contig10358.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=534bp|location=Sequence derived from alignment at C-tenellus_contig10358:1188..1721- (Choristocarpus tenellus KU2346)
TAGGGATGTATCCCTAGTGTAGATTGGGCTATTGGTTTCTAGTCCTGTGT
GCAATCCTCTGCCCGAGAGGTGAACATTTCAGGGATATTGAGAACCAAAT
GCCCAGAAGGCGAAGGTAAGTAGGACATCGGTACCTTGGTCCAGAATATG
AAATTCAAATCGGGACAATCCATACCTTGGTCCAGAATACCATATTCAAC
CTGGAACCATGCGTACCTTGGTCCAGAATATGAATTTCAAGTTAGAACCA
TCTGTAGCTTGGTCCAGAATACCATATTCAACCTGGAACCATCTGTACCT
TGGTCCGGAATACCACATTCACTCACTCAACACAGTATATTCAGTACGGA
GTCGAAAAATGTATCATCGTTGTCTATGTATTTTTTTATTGCATCCTTGA
AGAAAAAGAAAAAATGTGACAAAGGAAGGTACAAGTTGACCTTTGGACCG
TTCTTTAGTTGCCTGCTAGGTGACGGAAACCCATTGTTTTTTTGCCTTGT
TTCGAGCACCCCTTCCTTTCGTGTCTGTCTGCCT
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Coding sequence (CDS) from alignment at C-tenellus_contig10358:1188..1721-

>mRNA_C-tenellus_contig10358.2.1 ID=mRNA_C-tenellus_contig10358.2.1|Name=mRNA_C-tenellus_contig10358.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=387bp|location=Sequence derived from alignment at C-tenellus_contig10358:1188..1721- (Choristocarpus tenellus KU2346)
ATGAAATTCAAATCGGGACAATCCATACCTTGGTCCAGAATACCATATTC
AACCTGGAACCATGCGTACCTTGGTCCAGAATATGAATTTCAAGTTAGAA
CCATCTGTAGCTTGGTCCAGAATACCATATTCAACCTGGAACCATCTGTA
CCTTGGTCCGGAATACCACATTCACTCACTCAACACAGTATATTCAGTAC
GGAGTCGAAAAATGTATCATCGTTGTCTATGTATTTTTTTATTGCATCCT
TGAAGAAAAAGAAAAAATGTGACAAAGGAAGGTACAAGTTGACCTTTGGA
CCGTTCTTTAGTTGCCTGCTAGGTGACGGAAACCCATTGTTTTTTTGCCT
TGTTTCGAGCACCCCTTCCTTTCGTGTCTGTCTGCCT
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