mRNA_C-tenellus_contig1035.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1035.1.1
Unique NamemRNA_C-tenellus_contig1035.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
[Close]
BLAST of mRNA_C-tenellus_contig1035.1.1 vs. uniprot
Match: D7FH68_ECTSI (Aa_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH68_ECTSI)

HSP 1 Score: 184 bits (466), Expect = 1.500e-54
Identity = 90/153 (58.82%), Postives = 118/153 (77.12%), Query Frame = 1 
Query:    1 ILFVQVGYAAFGKWGARLSTFVMLVLTVFVLIAYMVLAKDIWSGLVAYALEMELDERESNQIGYRSVEKNNQEPQARAEIKLVADNWGDVMEAFPILSLAYLCHFNMLSVQSQLVNPTRERLKGLLHGTVGMASFLYLVMGMSGYMYAYGQTK 459
            I +V+VG AAFG+ GA ++T V++ +T+FV IAYMVL +DIWSG+V   +   LD  +SN IGYRSVE N ++P A+  +KL AD+WGD+MEAFPI  L++ CHFN+LSV S  VNPTRERLKGLLHGT+G+ S LY+V+ + GY+YAY  TK
Sbjct:   12 ITYVEVGQAAFGEPGAIVTTSVLMAMTIFVTIAYMVLVRDIWSGIVESVIGETLDSDQSNHIGYRSVEANQEDPTAKLGLKLNADSWGDIMEAFPIFCLSFQCHFNILSVHSHFVNPTRERLKGLLHGTMGLTSGLYIVLALCGYLYAYEGTK 164
[Close]
BLAST of mRNA_C-tenellus_contig1035.1.1 vs. uniprot
Match: A0A835YKB4_9STRA (Transmembrane amino acid transporter protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKB4_9STRA)

HSP 1 Score: 122 bits (306), Expect = 4.690e-30
Identity = 74/196 (37.76%), Postives = 100/196 (51.02%), Query Frame = 1 
Query:   13 QVGYAAFGKWGARLSTFVMLVLTVFVLIAYMVLAKDIWSGL----VAYALEMELDE-----RESN--------------------------------------QIGYRSVEKNNQEPQARAEIKLVADNWGDVMEAFPILSLAYLCHFNMLSVQSQLVNPTRERLKGLLHGTVGMASFLYLVMGMSGYMYAYGQTK 459
             V   AFG  G   +T ++L +T+FVL+AYM+L +DIWSGL    V +  E E  E      ESN                                       IGYR  E N + P+AR +      N   ++ AFPI+SLA++C FN+LSV + LVNPTRERLKG++H ++G    +YL +G  GY YAYG T+
Sbjct:   48 SVAKVAFGPTGGYATTLILLCMTLFVLLAYMILVRDIWSGLIGLLVGWFTENEAGEVIFTPEESNWVLVGCLIATLPACLAKSLHALRHMCYVGFFSALVLTVAIGYRCFEYNTEHPEARKQAVAFTSNASQILGAFPIMSLAFMCQFNILSVHASLVNPTRERLKGIIHSSLGAGGSIYLALGFLGYFYAYGNTQ 243
[Close]
BLAST of mRNA_C-tenellus_contig1035.1.1 vs. uniprot
Match: A0A7S2UXQ2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXQ2_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 2.830e-21
Identity = 47/93 (50.54%), Postives = 66/93 (70.97%), Query Frame = 1 
Query:  184 IGYRSVEKNNQEPQARAEIKL-VADNWGDVMEAFPILSLAYLCHFNMLSVQSQLVNPTRERLKGLLHGTVGMASFLYLVMGMSGYMYAYGQTK 459
            I YRS+  N + P   A   L V  ++GDV+ + PI+SL +LCHFNMLSV SQLVNPTR+R+K ++H  + +++ +YL+MG+ GY YAY  TK
Sbjct:   85 ICYRSLSFNAENPMEFAARSLAVTTDFGDVLYSLPIMSLVFLCHFNMLSVHSQLVNPTRQRVKSMIHSAMSLSTLIYLLMGLLGYFYAYENTK 177
[Close]
BLAST of mRNA_C-tenellus_contig1035.1.1 vs. uniprot
Match: A0A6H5J7N9_9PHAE (Aa_trans domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7N9_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 1.040e-14
Identity = 45/116 (38.79%), Postives = 59/116 (50.86%), Query Frame = 1 
Query:   76 LTVFVLIAYMVLAKDIWSGLVAYALEMELDERESNQ--------------------------------------IGYRSVEKNNQEPQARAEIKLVADNWGDVMEAFPILSLAYLC 309
            +T+FV IAYMVL +DIWSG+V   +   LD  +SN                                       IGYRSVE N ++P A+ E+KL AD+WGD+MEAFPI  L++ C
Sbjct:    3 MTIFVTIAYMVLVRDIWSGIVESVIGETLDSDQSNYVLFVALLLVFPACLAKDLHALRHFCYVGFFSALVLTAAIGYRSVEANQEDPTAKLELKLNADSWGDIMEAFPIFCLSFQC 118
[Close]
BLAST of mRNA_C-tenellus_contig1035.1.1 vs. uniprot
Match: A0A8K1C5D8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C5D8_PYTOL)

HSP 1 Score: 80.1 bits (196), Expect = 1.250e-14
Identity = 36/73 (49.32%), Postives = 50/73 (68.49%), Query Frame = 1 
Query:  238 IKLVADNWGDVMEAFPILSLAYLCHFNMLSVQSQLVNPTRERLKGLLHGTVGMASFLYLVMGMSGYMYAYGQT 456
            IKL  DNW D + AFPI+S+++LCHFN+L V  +L  PTR RLK ++  T+    F Y+V+G +GY +AY Q 
Sbjct:  226 IKLFPDNWKDPVYAFPIISVSFLCHFNVLPVYRELKKPTRRRLKNIVTCTMASTWFFYMVVGFTGYFFAYRQV 298
[Close]
BLAST of mRNA_C-tenellus_contig1035.1.1 vs. uniprot
Match: A0A2D4CAQ0_PYTIN (Aa_trans domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CAQ0_PYTIN)

HSP 1 Score: 78.2 bits (191), Expect = 6.000e-14
Identity = 35/70 (50.00%), Postives = 49/70 (70.00%), Query Frame = 1 
Query:  238 IKLVADNWGDVMEAFPILSLAYLCHFNMLSVQSQLVNPTRERLKGLLHGTVGMASFLYLVMGMSGYMYAY 447
            IK   DNW D + AFPI+S+++LCHFN+L V  +L  PTR RLKG++  T+    F Y+V+G +GY +AY
Sbjct:  243 IKWFPDNWKDPLYAFPIISVSFLCHFNVLPVYRELQKPTRRRLKGIVSCTMFSTWFFYMVVGFTGYFFAY 312
[Close]
BLAST of mRNA_C-tenellus_contig1035.1.1 vs. uniprot
Match: A0A7S1Z8F4_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z8F4_TRICV)

HSP 1 Score: 72.8 bits (177), Expect = 1.400e-13
Identity = 33/65 (50.77%), Postives = 49/65 (75.38%), Query Frame = 1 
Query:  265 DVMEAFPILSLAYLCHFNMLSVQSQLVNPTRERLKGLLHGTVGMASFLYLVMGMSGYMYAYGQTK 459
            D++ AFPI++L++   +N+LSV S LVNPTR R+K +L GT+ +   L+ V+GM GY+YAY +TK
Sbjct:   50 DMVFAFPIIALSFFSIYNVLSVHSALVNPTRSRVKFVLDGTIFLCFVLFFVVGMGGYLYAYDETK 114
[Close]
BLAST of mRNA_C-tenellus_contig1035.1.1 vs. uniprot
Match: A0A3M6V9A6_9STRA (Aa_trans domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V9A6_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 2.080e-13
Identity = 33/73 (45.21%), Postives = 50/73 (68.49%), Query Frame = 1 
Query:  238 IKLVADNWGDVMEAFPILSLAYLCHFNMLSVQSQLVNPTRERLKGLLHGTVGMASFLYLVMGMSGYMYAYGQT 456
            IKL  D+W D   AFPI+S+++LCHFN+L V  +L  PTR RLK ++  T+  A   Y+++G  GY++A+ Q+
Sbjct:  227 IKLTPDSWVDAAYAFPIISVSFLCHFNVLPVYRELHKPTRHRLKKIVASTISFAWLFYMIVGTMGYLFAFQQS 299
[Close]
BLAST of mRNA_C-tenellus_contig1035.1.1 vs. uniprot
Match: A0A2P4Y657_9STRA (Sodium-coupled neutral amino acid transporter n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y657_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 2.080e-13
Identity = 37/87 (42.53%), Postives = 57/87 (65.52%), Query Frame = 1 
Query:  193 RSVEKNNQEPQARAEIKLVADNWGDVMEAFPILSLAYLCHFNMLSVQSQLVNPTRERLKGLLHGTVGMASFLYLVMGMSGYMYAYGQ 453
            R +++   EPQ    IKLV D+W D   AFPI+S+++LCHFN+L V  +L  PTR RLK ++  T+      Y+++G+ GY++A+ Q
Sbjct:  214 RDIQEIEAEPQI--PIKLVPDSWADAAYAFPIISVSFLCHFNVLPVYRELHKPTRHRLKKIVASTMFSTWLFYMLVGIMGYLFAFRQ 298
[Close]
BLAST of mRNA_C-tenellus_contig1035.1.1 vs. uniprot
Match: A0A6A3ZBD5_9STRA (Aa_trans domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3ZBD5_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 3.880e-13
Identity = 34/79 (43.04%), Postives = 53/79 (67.09%), Query Frame = 1 
Query:  217 EPQARAEIKLVADNWGDVMEAFPILSLAYLCHFNMLSVQSQLVNPTRERLKGLLHGTVGMASFLYLVMGMSGYMYAYGQ 453
            E + +  IKLV D+W D   AFPI+S+++LCHFN++ V  +L  PTR RLK ++  T+      Y+++G+ GY++AY Q
Sbjct:  220 EAEPQIPIKLVPDSWADAAYAFPIISVSFLCHFNVMPVYRELHKPTRHRLKKIVASTMFSTWLFYVLVGIMGYLFAYRQ 298
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1035.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FH68_ECTSI1.500e-5458.82Aa_trans domain-containing protein n=1 Tax=Ectocar... [more]
A0A835YKB4_9STRA4.690e-3037.76Transmembrane amino acid transporter protein-domai... [more]
A0A7S2UXQ2_9STRA2.830e-2150.54Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6H5J7N9_9PHAE1.040e-1438.79Aa_trans domain-containing protein (Fragment) n=1 ... [more]
A0A8K1C5D8_PYTOL1.250e-1449.32Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4CAQ0_PYTIN6.000e-1450.00Aa_trans domain-containing protein n=1 Tax=Pythium... [more]
A0A7S1Z8F4_TRICV1.400e-1350.77Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A3M6V9A6_9STRA2.080e-1345.21Aa_trans domain-containing protein n=1 Tax=Peronos... [more]
A0A2P4Y657_9STRA2.080e-1342.53Sodium-coupled neutral amino acid transporter n=2 ... [more]
A0A6A3ZBD5_9STRA3.880e-1343.04Aa_trans domain-containing protein n=2 Tax=Phytoph... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1035contigC-tenellus_contig1035:7026..15203 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FH68
PFAMsAa_trans,RCC1
Model size465
Max annot lvl2759|Eukaryota
KEGG koko:K14992
KEGG TC2.A.18.6.8
KEGG Pathwayko04727,map04727
Hectar predicted targeting categorysignal peptide
Exons3
Evalue2.46e-55
EggNOG OGsCOG0814@1|root,KOG1305@2759|Eukaryota
Ec32 ortholog descriptionTransmembrane amino acid transporter
Ec32 orthologEc-13_000970.1
Descriptionamino acid transmembrane transporter activity
Cds size465
COG categoryE
BRITEko00000,ko00001,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789126.9319599-CDS-C-tenellus_contig1035:7025..72081680789126.9319599-CDS-C-tenellus_contig1035:7025..7208Choristocarpus tenellus KU2346CDSC-tenellus_contig1035 7026..7208 +
1680789126.951642-CDS-C-tenellus_contig1035:11074..112181680789126.951642-CDS-C-tenellus_contig1035:11074..11218Choristocarpus tenellus KU2346CDSC-tenellus_contig1035 11075..11218 +
1680789126.9629226-CDS-C-tenellus_contig1035:15065..152031680789126.9629226-CDS-C-tenellus_contig1035:15065..15203Choristocarpus tenellus KU2346CDSC-tenellus_contig1035 15066..15203 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1035.1.1prot_C-tenellus_contig1035.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1035 7026..15203 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1035.1.1

>prot_C-tenellus_contig1035.1.1 ID=prot_C-tenellus_contig1035.1.1|Name=mRNA_C-tenellus_contig1035.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=155bp
ILFVQVGYAAFGKWGARLSTFVMLVLTVFVLIAYMVLAKDIWSGLVAYAL
EMELDERESNQIGYRSVEKNNQEPQARAEIKLVADNWGDVMEAFPILSLA
YLCHFNMLSVQSQLVNPTRERLKGLLHGTVGMASFLYLVMGMSGYMYAYG
QTKV*
back to top

mRNA from alignment at C-tenellus_contig1035:7026..15203+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1035.1.1 ID=mRNA_C-tenellus_contig1035.1.1|Name=mRNA_C-tenellus_contig1035.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=8178bp|location=Sequence derived from alignment at C-tenellus_contig1035:7026..15203+ (Choristocarpus tenellus KU2346)
ATACTTTTTGTGCAGGTTGGATATGCTGCGTTTGGCAAGTGGGGGGCTAG
ATTATCTACATTTGTTATGCTGGTACTGACAGTGTTTGTGCTGATTGCAT
ACATGGTTTTGGCCAAAGACATATGGTCTGGTTTGGTGGCGTATGCACTA
GAGATGGAGCTGGATGAAAGGGAGTCAAACCAGGTACTTTAATGATTTGT
TAATTGTACTGGCATATTTTAACTACTCAGACGCAGCGAAAATAACAGCG
TAAATTGTGTACTGGGAGTTGCTCGGTCGACCAGTAGATGATTGACTAGG
ATTGAATGGAAATTGTTGAACTTCTATTGATGGGGTGTGGACTATGTCCG
CACGTTTACAACAGATTGTGTCAGTAACAGCTCAATAAATGGTAATCTCG
AATTGTGAAATATGTCATGCCCACTGAGTAGTCATTTGAGCAGTAGGTCA
CTCTTGGGATTCTTCCCTCCTCGAGGGCCCTGTGGGTCGACTTTTCCATG
GTGCCGATCATCCCGTAGGTACACACCATGTACGGGGACAGGAGAAGTGT
TACATAAATGAAAAGTATCAAAACGTAAGAAAGTGTTGTGAATCAGAGGT
AGGAGTTGTTAGAGCGTATATCTTGGAGTTGCAGTGGACCAATAATCATT
CGCATAAGTTTAGTAAGCCTTTTCTCTGTCTTTTTTCCGCTGACAACACT
TGCAAACAGTCACTATTTACATAATCGATCGATGTGAATTTTCGAATATT
TTTTGTGTATTTTCTGATCGCTGGTTGGTTATGAAGACGGAACATACACA
CATATATATATATTTTTCAGGCATCAAAGAAATGTGTGTTAAGTATGACT
TGCTGTTGCTGTTGCATTTCTACCTACATTGCAATGAGCGTAGTATTACA
AAAACGTCAGTTTTGAAATGATTGAAGAATCCTAGAAGGAGCCTCATGGC
CCACCAGTCTGTGGCCTTAAAATATTTGCATGGTGGGCGGGTTCCAGTCA
TAAGTAAGATGTATAGTACTGCACTAAAAATGGGTGCTAGTGAGGTACAT
GGCTTGTACTCTGTACTGCCCAATATTTCCTTCATGCTATAACATGATGC
ACACTCAGCACTTCTCAACTTAGGTAAGCTGTGAACCCATCCGGAAGGAT
TAGGGTAGGAGACCCAAACGACCAACCAAGCAACATGGAAGCCTCGGTAC
CAAAGAGAGGGAGGTTCTTTGTTTCATAGTCGGGGAAAACACAATGTGAA
AAGGTTGACCTATCCAGCCAAGTTGTATCTACTCGGCACATGTTTCTTTG
GTCCTAGTGGTTGAGATCCAGTCGAAAACTACGGTATACATGTGTTTCAA
AGTGGACTAGAGCGCCATCACTGACACAGTTGACTATAGGCACACCATCA
CAGCCGCCTTCTTAATGCGTTGGAAATATTGTATGAATTAATTAAAGGAT
TGCTGTATAGTTCTAGAGTTAAGCTGTTTTTGCTCAATCTCTAAGACATG
ATGTGGTAAGTGTGATAGTGTTTGTCTACACACATTCAAGCCATAGATAG
GTAGAGGTATGCCATGACACAGAGATGATTTCTTTTTTGTCCAACTAGTT
TGAAGTCGAACATTTGCACCAACATGTAAGTGCTTTTGCCAACACATTTG
AGTCATTGGAACTATTTAATTGGGTAAACACGCTTGGTTTTGATTAAATG
ATTACTTGATTGAGTCATGGTCAATATTGTTATCAAAATTAAGAAAATTG
AATATAACTTGAATTTTGATTGCTTCATTGCTCTGATAATGAATCAATAT
CCCTGCTATCTTCTCTACCTCATTGTCCTTACCATCACTATTTATTGTTT
TATTGGTTGAAATAAGCAAGGGGTCGGTGAATGATTGGTTGATGTTTTTG
CGGGCTAGGAAATGTTGGAGCTCCAGTTGGCGGTAAAATCCACTGTATAG
TTCGTCATCAACACCAGTGCTTTCTAGCACACCAAGTATGAAATTCAAGG
TGACAAAGAACAGCATGGTGTAAGAAGCCTTGTTTGTCGCCATGCAGTGT
CTCCGCCATTTCATTAGTGACTTTTGATGTAAATATCAACAAACCCCACA
TCCCAAAGCTGGAACGTTACCGTGCAGCTAGATTTTTCGATAGTGGCGAA
CAATTACTGACTATCAGAGTTCCCCCCCGCCTGTGAAACCTTGCCGTAAC
CAATTTCATACAACATTCTTTTGCCCTGGTTTTCTGGGTCACAGGTCCTG
TTCTTCCTGCTGATCATTTGCTTGCCGGGCTGTATGGCCACCAACCTCCA
CAGTCTGCGTTACATGTCCTACATTGGATTTTTTTCGGCCATTCTCCTCA
CTGCAGCGGTGAGACAAGGTTTCGTCCAGTATGCTGTTTCTTGTATTATA
TAATTGCTATGAGAAAAAAGGTGTACCTTTTTTCTCATGAGTACCTTCCA
AAAGTTTTTGTGTGGATAGCAAAACGTTATTTTCTTTTGTCAAGTCGTCT
CCAGGTACTCTCCAACGAAAAGTTCTGATCTCCCTGCAAAGATTGAATAG
AGCAAAGTTGCAAATGGAAGCACTTTTTTGGCGCTTGCCTGGATTAAGAC
GTTGTTGGATTACAGGACTGGATTAAGGACCAATTGAAAGTAGTGGTAAA
TCGTGGACAAATTTTCTCCAAATGATTGGAAAAGGGAACAATCATCCGTC
GTGTTCAGCATAATAATCCTCATACTCAATGCAATATTAGATCATTGCGT
TTGATTTCGTGCTTCCTTTTATTTGTATGCTCGTAACCTACAAAAGTATA
ATATCTCGACTCAAAGTAAGCGTATGATGGTAAGTTTTCATACTTGAGAG
GGCCATCCACAAATGATCAATAGATGAGATTAATGTGTTACGTAGAGTAC
GGCTTTCGCAATCGAGAAGTATCTTCGAAATTGAAGATAGAGGGGGTAAG
TACTCGAGCATGCAGGGCACTGCTTTGCAGGGGCTATGTACAGGTAATTG
GTGATGGATTAAAAGTGATTAATGAAGTGGAACGTCTGGCGAGTAAGGAG
ACTGTATGAAATGTATCACTAGAGGTTGTCCTGGTGGATAGTTGTAACTG
TCCTCAGAAGAACAAAACACAGAAATCCTAAGCCTGAACCAGTGTGAGGA
AAACGCAACTGACTGCCGATAAATTTCTACACATATTTTTTTGTCCATAT
TTTTTCCTTGGTATTAAGCCATCATGCCAACTTACCTACTTTCCCAGCAG
ACAGTCAGGGGTATCGTTTTTTTTTGTGAGGTTCACTAGATAGATTGGTG
TGTCGAGAACGTGCATGCCAGAATGCAAGTGGCACTCCATTTCCTATAAA
AAGGAGTTGGTTTGGTTGGGCAATTTGATTAGCTTTTGCTCTGCTTTTGC
ATAACTTGGATGCGCACAGAAACTTTCAGTGTATTGCTTACTCAGTTAGA
TCCAAAGGTGTAGTCAACGTTCGAAACAGTAAGCGCCAAATGAAACCACG
AAGAAATTTCAGAAGAGCTTGAAACGTGTATATTATTCCTGAGAAAATAT
CCATCAACATTGATCAATCAATGCAAAACCACCCCCCTCGATTTTCGATG
TAGATTTTTTTCGATTTTCTTTTGTATCGATCAAATCGCTACAATTCACA
ATAGCATGGATGGTGATCTCAAGTTCTAGGGCACCCTACGAAGTTTGTGA
TGTTGTTGTAGTTGTCACATGAGTTCCTTCCAGGCATTTTAGGGGGGGTG
CATGGACTGCACAGCTATCCCATGTCTGGTGTTGTGCGGGTCAGGCCTGT
TGGATCAATACCTCGGGTCTGAGAGGACTACACAGAGTTTGTATAGCATG
GTCCACTTGACCATGTTGAGTGCCTGAGAGGACACCACAACCATAGTGTT
TGTCAGGTATTTGGGGCCGGGTAATATATTACCTGGAACCAAACCAGCAA
GTCAGGGATATAGAGATTCTGGGAATTGCCCTATAACCATGTAACCGAAC
TTTTTAAGGCTCTCATAAAATTATTGCTGTGAAAACAAAACGTACACAGA
TTGGGTATCGTTCAGTGGAGAAAAATAATCAAGAGCCTCAAGCGAGGGCT
GAGATCAAGCTGGTTGCAGACAACTGGGGTGATGTTATGGAGGCATTTCC
CATCCTGTCCCTAGCCTACTTATGCCACTTCAACATGCTCTCGGTGAGTG
GTTTAAAAAATATATGCAACAGATCTTTTATTTTTTGGGTGGCCAGTCAC
CAATCCAGACTCAAAGTATCTGGGGGGGGATGGCGGCTGTCACCGTTTTT
CCATGTCGCAATTTTTGGGTGATTTGGTTGCATGCGTTGGATGGATAATG
TAAGTGCACTTTTCCTGTTAAGGGTCCAAATGGACCCTGGTGTAGACTCC
TCCCCCCCGCCCCCAGACACTTTGAGCCTCAAGAAGTTACCGCTTTTTTT
CGGATTTAGAAACCGGCAGTCGCATGATGGTACAGTATTTACCGCAAAGG
TCGCAAGTAATTCAACATGTACCTTCCAGAATTTCTTAGCTTGTCATTCC
GCCAACAAAAACCGAAACTAATAATGACACATCTGGAAGTTGTCAGAGGG
TATAATAATAAAATAATATATTTTATTGCACTACACAAGAACAAAATCAA
GGTCAGATCGTACGGAGTACAACTGTGTCATACATAAGATTTTGGTTTCT
TATTACTGATTTCAGTATAGGAAAGCCTCTCGACCTTCTTGGTGGAAAAC
TTAAGGCGTCCTGGGACATAGGTAGGGCAATTCCTGGATGGGCTGGCTAC
TCATGTAGAGGGTGGTATGTGAGCTAAGTAGGGGTTCAACTGGAAGAGAG
CAGTGAAGGGACTCCTATGGCAGATTGGTCACAGCACAAGTCATGATCTC
TAAGGCGTTTCATGCAGTTCAAGCTGGAGGCTCAAAGTATCTGGGGGGCG
GGCGGTGACTGTCCATTTGGGGTCAATTTTTTTATATCGCGATTTTTGTG
TGATTTGGTTGCATACATCGGATGGATAATGTAAATGCACTTTTCCTGAT
TTTGACTCAAATGGACACCCTGGTGTAGACCCCCCCCCTCCCCCAGATAC
TTTGGGTCTGGAGACACCACGTCAATGGATAAGACGGGACTTGAGTGGTG
ATTCATGGAACTCTTCCCATGGTGCTAGATCACCTTCGTAGCACCAGTTT
GGAAGCAGTTTCAGCTAGAGTTGTCTTGGTATGTTTCTATTTTTCTTGTT
TTCAATCACACTACAGCTAACTCTTGGTGGTGTATCCAAAGGATTTTCTT
GTTCGAATTCCCGTTTTGAAGGTGAAGTAAACGAGAGGTATCCAGGTCTG
GGCCATTTTGCGTTTTAGATACTTTTTCAATCTTTTGCCATTTGCCCATA
TTTCTATGGGTGAAGCATGAAGTTTGACTTGAGAGCATTGATTTCTCCAC
CGTTTGAAACCTTTTTCGACACCATGCGTAAAACATCCTATACGTTTTTT
TTTTCTAGATTTCAAAAAGAAGACGCCCTCAAACAATGGTCTCTTTTCAT
ATGACTTTAGTAAACAAATGACTATTGAGTCAAAGTATATGAGAGGGTAG
AGCTGCGTCCATTCGGAGATCAAAATCCAATGTTGTGATTTTGATTTAAT
TTTTGCTATCGTGTTTTTTAAGATTTGTCGATATCCTTATTCTGGACACA
CCTTTTAATATCATACACATTTTACCTACTCCGAAACATTTTGGGGTAGG
AAAATGTTACAAAAAAACCGTGGAAAGCCAAGCCACAAATGGACAAATAT
GGGAAAACTCGTACCCTCTAAGATACTTTACCCTATTTTCGTCGTTCATT
CTTGTGATGAGATGCAGCAACATACTATTTTAACTGCATAAGGCTTTGTG
GACGTTAGAGGATGTAGTTTGAGGTTCACATCTTTTGTTGTTGTTGCAGA
TTTCTGCATGGTGGTCATGGTGTTCAACTCCATCTAGATCCATATTGGGT
GGGGAGTGCAAGTATTTTTCATTTGCAGTCAAACTTCAAGTGTGTTTTTG
CTCCATCCGTACATCCAAGTTCTAATAATATCAGTTCCCAATCCACTATG
AATTGCGATCCCTACTACTCTGTGTCAGGAGGAGTTTTCATAATACTTGG
TGTGCTGACCGGTTCTCATTGTAGTTCTGGAGTTCATCGTGTTTTGAATT
TTTTTATTATAATGGTCGGATTAGGGTATAGGTTGAATTAAGTATACGAT
CTTCCGTGGTGTTTCCAATGTGGTGTAAGTGGAGATTATAAAACGGATTG
TAAGTAGGGCTTGGGTAAGGATTGTATAGGGCTCGGGTGTGTGAGAGTGT
TTGTTGTTATTTTTGAAAGAGCTCTCTTCAAAATAATTATTTTAGTTCAG
GAGCTTCAAAAATTTATCCTGACTTGGGGAGAAATTTCCTTGAGACAACC
CCTGAAGAAGTTTCAATGTGCACATAATGGCAACTAGTAAAAACACCGCT
CAAGCATATGCTTGTAGTCAGGAGTGTGTTTTGCAGTGAAATGTGGACAC
TACGCTCACACCATGCACAAGAAATGTCTGTCGATCTCTCCGTCCCCCCA
GTTTGTATTCCTTTTGCTTCCATTGTTGTGCTGATCTTAGGTTAAAATGC
CACTGGAGATTGTTATGACAAAGGGTGAGGTATTGGAGTAAAATGAGTCA
AAGAACCGAGAGATATGCGGAGTTACACTTCAAATATGTCGGCAAATATG
TCCAAAACTCGCATTTTTACAATGGTACATAGGATATTTTCCAAATTATG
TCCAAGTGTTGAAAACAGTAGGGAAAAATTACCTCTCAAGTCAAAGTCAG
CACTCCATCCATATAAAAATTATTGAATTTGCAAAATATTGAAAACTGGC
CTATAATGAAAAAACTTCCAAAACTGGGTACCACTTGTTTACATTGCCTC
AGAATAAAGGGGGTGTTCGGAGGAGAAATTCAAAAATGGGTCCATAATGT
TAGAATAGAATACAGGCTATTTGCTGTGGCGATGGAGGGAATGTAATATT
TGCAGTCACAGCTTGTAATATAAGCTAGAGAGGGAAGCCCTCACTCACTC
AAAAAAAATAAAAAGGGAAGGACCACGAGTCAAGGATAGCTCTAGCAACG
AGCTCCTTTGACTTCTTTTTTTCGATACCCTGAACAAAGCACAAATGGAT
GGGCCCCTTTCCTATGACACATTTTTTTGACTTACAGTTACACGATGGAT
GTTTACTGTTGGTCATGATACTTGCTTCGAAATACAATAGCCATCCACTC
TTAACCATTCTGATTGTGCGCCTGGAAGCAGAGACCCGCTTTGGCTGCCC
ATCTCCTGAGGCTAGCATTTGTAGCATGCTGTGGGATAATGATCTCTTCA
CATAACCCTACCCGTACCCTTCTTGTGCAGATAGACAATATACTAGGGAC
ACAAAACAATGATCGAGATCCCAGTGTCCCTGCGAACCTTTACTACTTCA
ATTTGTTGTGTGGTCATTTTTATTTTACGATATGTTCCACACCGCTCAAG
CTTACTCTTTTTTATATTTTGACATGACTCTCTCCTCAACTCTATGGCCT
TTACCTTGTGAACTCTTATCCAAAGATCAGCACGAGGAGATGTTGTGACT
GTTTTCTATATCTGTATAGAAAATTATGAGATCATGAAAGAGACTATTTA
CATCATTTTTTCGGGACACAATAAATGACTATATTGCGAGTGGTTTGTTT
GTGTTCGTTTGTATAAGCTGTGCTCACATGGCAGAAAGCCAAGACATCTT
TGATAGCTTTCCCACCAACACTAATAGTAGATAATGCCCAAGTTATTTTC
CTTTTTTGGTGCTTCTTTGAAGAGATTATATACTGTTTAGTGTATTATTG
CTGTGATTCCACTGAAATTCACCAATACTGTAGTGACTCACTGCTGAAAA
TAGAACTGTTTGCACATCGTAGCATACCCAACCCTCACCCAATCCATATC
TCCCTAATCGATATCTCCCTAATCCACATATCTCCATTAGGTCCAGTCTC
AGCTGGTGAACCCCACACGTGAGAGACTGAAGGGTCTGCTTCATGGCACG
GTAGGAATGGCTTCTTTCCTGTACCTTGTGATGGGCATGTCCGGATATAT
GTATGCCTACGGTCAAACCAAGGTGTGA
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig1035:7026..15203+

>mRNA_C-tenellus_contig1035.1.1 ID=mRNA_C-tenellus_contig1035.1.1|Name=mRNA_C-tenellus_contig1035.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=465bp|location=Sequence derived from alignment at C-tenellus_contig1035:7026..15203+ (Choristocarpus tenellus KU2346)
ATACTTTTTGTGCAGGTTGGATATGCTGCGTTTGGCAAGTGGGGGGCTAG
ATTATCTACATTTGTTATGCTGGTACTGACAGTGTTTGTGCTGATTGCAT
ACATGGTTTTGGCCAAAGACATATGGTCTGGTTTGGTGGCGTATGCACTA
GAGATGGAGCTGGATGAAAGGGAGTCAAACCAGATTGGGTATCGTTCAGT
GGAGAAAAATAATCAAGAGCCTCAAGCGAGGGCTGAGATCAAGCTGGTTG
CAGACAACTGGGGTGATGTTATGGAGGCATTTCCCATCCTGTCCCTAGCC
TACTTATGCCACTTCAACATGCTCTCGGTCCAGTCTCAGCTGGTGAACCC
CACACGTGAGAGACTGAAGGGTCTGCTTCATGGCACGGTAGGAATGGCTT
CTTTCCTGTACCTTGTGATGGGCATGTCCGGATATATGTATGCCTACGGT
CAAACCAAGGTGTGA
back to top