mRNA_C-tenellus_contig9972.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9972.1.1
Unique NamemRNA_C-tenellus_contig9972.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig9972.1.1 vs. uniprot
Match: A0A0L0DB26_THETB (Protein kinase domain-containing protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DB26_THETB)

HSP 1 Score: 99.4 bits (246), Expect = 1.440e-22
Identity = 44/77 (57.14%), Postives = 57/77 (74.03%), Query Frame = 1
Query:    1 RTLPGMLVGIFFPVLGFVALGAQHTTANMGYFSIGLITMSNPPVTWEEAFLWNIVPASIGNIIGALVMVAGPFFFLH 231
            RTLPG+++GIF PVL FVALGA H+ ANMGYF++ LI   N P+TW EA+ WNI PA +GN +G  +++A P F  H
Sbjct:  662 RTLPGVILGIFLPVLAFVALGAAHSPANMGYFALSLIN-GNSPITWGEAWAWNIAPAVLGNALGGTLLLAFPIFISH 737          
BLAST of mRNA_C-tenellus_contig9972.1.1 vs. uniprot
Match: A0A0L0DB06_THETB (Formate dehydrogenase n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DB06_THETB)

HSP 1 Score: 85.1 bits (209), Expect = 7.620e-18
Identity = 35/77 (45.45%), Postives = 52/77 (67.53%), Query Frame = 1
Query:    1 RTLPGMLVGIFFPVLGFVALGAQHTTANMGYFSIGLITMSNPPVTWEEAFLWNIVPASIGNIIGALVMVAGPFFFLH 231
            RTLPG+++GIF PV+ FV LGA H+  NMGYF++ LI   N P+TW + + W++  A  GN++G  +++  P F  H
Sbjct:  270 RTLPGIVLGIFLPVMAFVVLGAAHSPTNMGYFALSLIN-GNSPITWGDTWAWHLPAAIAGNLLGGALLIGLPIFLAH 345          
BLAST of mRNA_C-tenellus_contig9972.1.1 vs. uniprot
Match: A0A7S1XTP2_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XTP2_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 5.960e-16
Identity = 39/75 (52.00%), Postives = 49/75 (65.33%), Query Frame = 1
Query:    1 RTLPGMLVGIFFPVLGFVALGAQHTTANMGYFSIGLITMSNPPVTWEEAFLWNIVPASIGNIIGALVMVAGPFFF 225
            R+L G  +G+  PV  FV+LG QH+ ANMGYF I LI       TW E F WN++PAS+GNIIG  +MV   FF+
Sbjct:  245 RSLLGKYIGVLPPVTLFVSLGLQHSPANMGYFMIALIN-DETKYTWGEVFGWNLIPASLGNIIGGSMMVGCSFFY 318          
BLAST of mRNA_C-tenellus_contig9972.1.1 vs. uniprot
Match: A0A1G9FAG9_9RHOB (Formate transporter n=1 Tax=Aliiruegeria lutimaris TaxID=571298 RepID=A0A1G9FAG9_9RHOB)

HSP 1 Score: 78.6 bits (192), Expect = 8.730e-16
Identity = 39/75 (52.00%), Postives = 49/75 (65.33%), Query Frame = 1
Query:    1 RTLPGMLVGIFFPVLGFVALGAQHTTANMGYFSIGLITMSNPPVTWEEAFLWNIVPASIGNIIGALVMVAGPFFF 225
             TL G  V IF  V  FVA   QH+ ANMGYFS+ + T   P   W +AFLWN++PA IGNI+G  ++VA PF+F
Sbjct:  193 NTLFGKFVPIFLVVSLFVAGNLQHSPANMGYFSLSMATGGGPG--WSDAFLWNVIPAGIGNILGGSLLVALPFWF 265          
BLAST of mRNA_C-tenellus_contig9972.1.1 vs. uniprot
Match: A0A5C6VPU5_9BACI (Formate/nitrite transporter family protein n=3 Tax=Metabacillus TaxID=2675233 RepID=A0A5C6VPU5_9BACI)

HSP 1 Score: 77.4 bits (189), Expect = 2.770e-15
Identity = 38/77 (49.35%), Postives = 50/77 (64.94%), Query Frame = 1
Query:    1 RTLPGMLVGIFFPVLGFVALGAQHTTANMGYFSIGLITMSNPPVTWEEAFLWNIVPASIGNIIGALVMVAGPFFFLH 231
            R + G ++G   PV  FVA   QH+ ANMGYFSIG+ T  N   TW +  L+N++PASIGNIIG  +MV+  F F +
Sbjct:  202 RDITGKIIGTLLPVTLFVAGNFQHSAANMGYFSIGIFT--NDTYTWYQFLLYNLIPASIGNIIGGAIMVSLLFSFAY 276          
BLAST of mRNA_C-tenellus_contig9972.1.1 vs. uniprot
Match: A0A2H0VRD3_9BACT (Formate dehydrogenase n=1 Tax=Chlamydiae bacterium CG10_big_fil_rev_8_21_14_0_10_35_9 TaxID=1973935 RepID=A0A2H0VRD3_9BACT)

HSP 1 Score: 75.1 bits (183), Expect = 1.750e-14
Identity = 37/75 (49.33%), Postives = 48/75 (64.00%), Query Frame = 1
Query:    1 RTLPGMLVGIFFPVLGFVALGAQHTTANMGYFSIGLITMSNPPVTWEEAFLWNIVPASIGNIIGALVMVAGPFFF 225
            +T+ G  + IF  V  F+A   QHT ANMG FSI +   + P   W  AF WNI+PA+IGNIIG  +MVA PF++
Sbjct:  195 KTITGKFIPIFLAVSLFIAANFQHTPANMGLFSISMALDNEPG--WVVAFFWNIIPATIGNIIGGSMMVALPFWY 267          
BLAST of mRNA_C-tenellus_contig9972.1.1 vs. uniprot
Match: UPI001960BC91 (formate/nitrite transporter family protein n=1 Tax=Thalassobacillus pellis TaxID=748008 RepID=UPI001960BC91)

HSP 1 Score: 75.1 bits (183), Expect = 1.980e-14
Identity = 37/77 (48.05%), Postives = 52/77 (67.53%), Query Frame = 1
Query:    1 RTLPGMLVGIFFPVLGFVALGAQHTTANMGYFSIGLITMSNPPVTWEEAFLWNIVPASIGNIIGALVMVAGPFFFLH 231
            R + G L+G   PV+ FVA   QH+ ANMGYFS+G++  S+ P  W E  L+N++PASIGNIIG  ++VA  F + +
Sbjct:  199 RDITGKLLGTTLPVILFVAGNFQHSAANMGYFSLGVL--SDTPYAWYEFILFNLIPASIGNIIGGALLVALIFTYAY 273          
BLAST of mRNA_C-tenellus_contig9972.1.1 vs. uniprot
Match: A0A0A5I667_9BACI (Formate dehydrogenase n=1 Tax=Pontibacillus halophilus JSM 076056 = DSM 19796 TaxID=1385510 RepID=A0A0A5I667_9BACI)

HSP 1 Score: 74.3 bits (181), Expect = 4.450e-14
Identity = 35/77 (45.45%), Postives = 51/77 (66.23%), Query Frame = 1
Query:    1 RTLPGMLVGIFFPVLGFVALGAQHTTANMGYFSIGLITMSNPPVTWEEAFLWNIVPASIGNIIGALVMVAGPFFFLH 231
            R + G ++G   PV+ FVA   QH+ ANMGYFS+G++  S P  TW E   +N++PASIGNIIG  ++V+  F + +
Sbjct:  213 RDITGKILGTALPVILFVAGNFQHSAANMGYFSLGIL--SKPDYTWYEFIFFNLIPASIGNIIGGAILVSLLFSYAY 287          
BLAST of mRNA_C-tenellus_contig9972.1.1 vs. uniprot
Match: A0A1G9MRD2_9RHOB (Formate transporter n=1 Tax=Aliiruegeria lutimaris TaxID=571298 RepID=A0A1G9MRD2_9RHOB)

HSP 1 Score: 73.9 bits (180), Expect = 4.650e-14
Identity = 37/75 (49.33%), Postives = 47/75 (62.67%), Query Frame = 1
Query:    1 RTLPGMLVGIFFPVLGFVALGAQHTTANMGYFSIGLITMSNPPVTWEEAFLWNIVPASIGNIIGALVMVAGPFFF 225
             TL G  V IF  V  FVA   QH+ ANMGYFS+ +     P   W +AFLWN++PA IGNI+G  ++V  PF+F
Sbjct:  191 NTLVGKYVPIFLVVSLFVAGNLQHSPANMGYFSLSMAHGGGPG--WVDAFLWNVIPAGIGNILGGSLLVVLPFWF 263          
BLAST of mRNA_C-tenellus_contig9972.1.1 vs. uniprot
Match: A0A2M7DGF9_9FLAO (Formate dehydrogenase n=1 Tax=Flavobacteriaceae bacterium CG02_land_8_20_14_3_00_34_13 TaxID=1973994 RepID=A0A2M7DGF9_9FLAO)

HSP 1 Score: 73.9 bits (180), Expect = 6.290e-14
Identity = 36/75 (48.00%), Postives = 50/75 (66.67%), Query Frame = 1
Query:    1 RTLPGMLVGIFFPVLGFVALGAQHTTANMGYFSIGLITMSNPPVTWEEAFLWNIVPASIGNIIGALVMVAGPFFF 225
            +T+ G  + IF  V  FVA   QH+ ANMGYFS+ + T + P   WE A LWN++PA+IGNI+G   +VA PF++
Sbjct:  220 KTIIGKYLPIFLAVSLFVAANFQHSPANMGYFSLIMPTGNGPG--WENAILWNLIPAAIGNILGGTFLVALPFWY 292          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9972.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0L0DB26_THETB1.440e-2257.14Protein kinase domain-containing protein n=1 Tax=T... [more]
A0A0L0DB06_THETB7.620e-1845.45Formate dehydrogenase n=1 Tax=Thecamonas trahens A... [more]
A0A7S1XTP2_9STRA5.960e-1652.00Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A1G9FAG9_9RHOB8.730e-1652.00Formate transporter n=1 Tax=Aliiruegeria lutimaris... [more]
A0A5C6VPU5_9BACI2.770e-1549.35Formate/nitrite transporter family protein n=3 Tax... [more]
A0A2H0VRD3_9BACT1.750e-1449.33Formate dehydrogenase n=1 Tax=Chlamydiae bacterium... [more]
UPI001960BC911.980e-1448.05formate/nitrite transporter family protein n=1 Tax... [more]
A0A0A5I667_9BACI4.450e-1445.45Formate dehydrogenase n=1 Tax=Pontibacillus haloph... [more]
A0A1G9MRD2_9RHOB4.650e-1449.33Formate transporter n=1 Tax=Aliiruegeria lutimaris... [more]
A0A2M7DGF9_9FLAO6.290e-1448.00Formate dehydrogenase n=1 Tax=Flavobacteriaceae ba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9972contigC-tenellus_contig9972:179..754 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog529818.AMSG_11888T0
PFAMsPkinase
Model size231
Max annot lvl2759|Eukaryota
KEGG koko:K17535
Hectar predicted targeting categorysignal peptide
Exons2
Evalue2.18e-19
EggNOG OGsKOG0581@1|root,KOG0581@2759|Eukaryota
EC2.7.11.1
DescriptionMAP kinase kinase activity
Cds size216
COG categoryG
BRITEko00000,ko01000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790209.4436831-CDS-C-tenellus_contig9972:178..2651680790209.4436831-CDS-C-tenellus_contig9972:178..265Choristocarpus tenellus KU2346CDSC-tenellus_contig9972 179..265 -
1680790209.4554005-CDS-C-tenellus_contig9972:610..7391680790209.4554005-CDS-C-tenellus_contig9972:610..739Choristocarpus tenellus KU2346CDSC-tenellus_contig9972 611..739 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790209.4736533-UTR-C-tenellus_contig9972:739..7541680790209.4736533-UTR-C-tenellus_contig9972:739..754Choristocarpus tenellus KU2346UTRC-tenellus_contig9972 740..754 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9972.1.1prot_C-tenellus_contig9972.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9972 179..739 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9972.1.1

>prot_C-tenellus_contig9972.1.1 ID=prot_C-tenellus_contig9972.1.1|Name=mRNA_C-tenellus_contig9972.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=72bp
MLVGIFFPVLGFVALGAQHTTANMGYFSIGLITMSNPPVTWEEAFLWNIV
PASIGNIIGALVMVAGPFFFLH
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mRNA from alignment at C-tenellus_contig9972:179..754-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9972.1.1 ID=mRNA_C-tenellus_contig9972.1.1|Name=mRNA_C-tenellus_contig9972.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=576bp|location=Sequence derived from alignment at C-tenellus_contig9972:179..754- (Choristocarpus tenellus KU2346)
AGAACCCTTCCTGGCATGCTGGTTGGCATATTTTTTCCAGTGCTGGGCTT CGTTGCCCTAGGTGCTCAGCACACCACAGCCAATATGGGCTACTTCAGCA TTGGGTTGATCACAATGAGCAACCCCCCAGTGACTTGGGAAGAGGTGAGG CAAGAGGCACATGACAGCTGCCTTTTTCTTTTAACGCACAGGTGGGAAAT ACTTTCTATACCATCGTCGTACGTTCCATGCATGAGCCGGTTTATTGGCA CAACACAGGTACGCACTCCCCTTACCACAATACCCCCCTTAATAGACAGG TGCTTGCAGGCCAATGGACTTCTTTTCCGAGGATCATTTCTACAGTGGCA CTTTCCTTTGGGACAGTGAATACGGATGTCTGACAGACAGCACACTATCT TATTTTGATAGAATGAGGAGATATCCTATTACACAAAACACCTTCAATAT CTGCAATTTATGAGCACTGCCTACTTGTTCCTTGCACAGGCGTTTTTGTG GAACATCGTACCTGCATCTATTGGAAACATCATTGGTGCCTTGGTCATGG TAGCAGGTCCATTCTTCTTCCTTCAC
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Coding sequence (CDS) from alignment at C-tenellus_contig9972:179..754-

>mRNA_C-tenellus_contig9972.1.1 ID=mRNA_C-tenellus_contig9972.1.1|Name=mRNA_C-tenellus_contig9972.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=216bp|location=Sequence derived from alignment at C-tenellus_contig9972:179..754- (Choristocarpus tenellus KU2346)
ATGCTGGTTGGCATATTTTTTCCAGTGCTGGGCTTCGTTGCCCTAGGTGC
TCAGCACACCACAGCCAATATGGGCTACTTCAGCATTGGGTTGATCACAA
TGAGCAACCCCCCAGTGACTTGGGAAGAGGCGTTTTTGTGGAACATCGTA
CCTGCATCTATTGGAAACATCATTGGTGCCTTGGTCATGGTAGCAGGTCC
ATTCTTCTTCCTTCAC
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