prot_C-tenellus_contig9962.2.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig9962.2.1
Unique Nameprot_C-tenellus_contig9962.2.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length73
Homology
BLAST of mRNA_C-tenellus_contig9962.2.1 vs. uniprot
Match: A0A6H5JWK8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWK8_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 1.390e-11
Identity = 33/58 (56.90%), Postives = 42/58 (72.41%), Query Frame = 0
Query:    2 KLQKSLYGIVQASCNWNALLVASLLELGLEQCEADPCLFRWMLDGELVLTMLIRVDDM 59
            +L KSLYG+ QAS  W ALL   LL LG EQC AD C+FR + DGE+VL +++ VDD+
Sbjct:   16 QLNKSLYGLRQASREWYALLKKCLLALGFEQCMADSCVFRLVEDGEVVLILVVHVDDI 73          
BLAST of mRNA_C-tenellus_contig9962.2.1 vs. uniprot
Match: A0A6H5K307_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K307_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 2.080e-11
Identity = 33/58 (56.90%), Postives = 42/58 (72.41%), Query Frame = 0
Query:    2 KLQKSLYGIVQASCNWNALLVASLLELGLEQCEADPCLFRWMLDGELVLTMLIRVDDM 59
            +L KSLYG+ QAS  W ALL   LL LG EQC AD CLFR++  GE+VL +++ VDD+
Sbjct:  249 QLNKSLYGLRQASREWYALLKKCLLALGFEQCMADSCLFRFVEGGEVVLLLVVHVDDI 306          
BLAST of mRNA_C-tenellus_contig9962.2.1 vs. uniprot
Match: A0A6H5KFD2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFD2_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 9.720e-11
Identity = 32/58 (55.17%), Postives = 41/58 (70.69%), Query Frame = 0
Query:    2 KLQKSLYGIVQASCNWNALLVASLLELGLEQCEADPCLFRWMLDGELVLTMLIRVDDM 59
            +L KSLYG+ QAS  W ALL   LL LG EQC AD C+FR++  GE VL +++ VDD+
Sbjct:  214 QLNKSLYGLRQASRQWYALLTKCLLALGFEQCMADSCVFRFVEGGEEVLLLVVHVDDI 271          
BLAST of mRNA_C-tenellus_contig9962.2.1 vs. uniprot
Match: A0A6H5KEU9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEU9_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 1.140e-10
Identity = 32/59 (54.24%), Postives = 42/59 (71.19%), Query Frame = 0
Query:    2 KLQKSLYGIVQASCNWNALLVASLLELGLEQCEADPCLFRWMLDGELVLTMLIRVDDML 60
            +L KSLYG+ QAS  W ALL   LL LG EQC AD C+FR +  GE+VL +++ VDD++
Sbjct:  245 QLNKSLYGLRQASREWYALLKKCLLALGFEQCMADSCVFRSVEGGEVVLLLVVHVDDIV 303          
BLAST of mRNA_C-tenellus_contig9962.2.1 vs. uniprot
Match: A0A6H5JBR0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBR0_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 1.320e-10
Identity = 32/58 (55.17%), Postives = 41/58 (70.69%), Query Frame = 0
Query:    2 KLQKSLYGIVQASCNWNALLVASLLELGLEQCEADPCLFRWMLDGELVLTMLIRVDDM 59
            +L KSLYG+ QAS  W ALL   LL LG EQC AD C+FR +  GE+VL +++ VDD+
Sbjct:  173 QLNKSLYGLRQASREWYALLKKCLLALGFEQCMADSCVFRLVEGGEVVLLLVVHVDDI 230          
BLAST of mRNA_C-tenellus_contig9962.2.1 vs. uniprot
Match: A0A6H5KG67_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG67_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.840e-10
Identity = 32/58 (55.17%), Postives = 41/58 (70.69%), Query Frame = 0
Query:    2 KLQKSLYGIVQASCNWNALLVASLLELGLEQCEADPCLFRWMLDGELVLTMLIRVDDM 59
            +L KSLYG+ QAS  W ALL   LL LG EQC AD C+FR++  GE+VL + + VDD+
Sbjct:   70 QLNKSLYGLRQASREWYALLKKCLLALGFEQCMADSCVFRFVEGGEVVLLLEVHVDDI 127          
BLAST of mRNA_C-tenellus_contig9962.2.1 vs. uniprot
Match: A0A6H5KKQ0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKQ0_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 2.990e-10
Identity = 26/62 (41.94%), Postives = 43/62 (69.35%), Query Frame = 0
Query:    2 KLQKSLYGIVQASCNWNALLVASLLELGLEQCEADPCLFRWMLDGELVLTMLIRVDDMLMSS 63
            K++++LYG+ Q+   W      +L+  G EQC  DPC+FR ++DGELV  ++I VDD+++S+
Sbjct:   47 KVERALYGLKQSGREWGFEAADALISNGYEQCRVDPCIFRKVVDGELVGLIVINVDDIMLSA 108          
BLAST of mRNA_C-tenellus_contig9962.2.1 vs. uniprot
Match: A0A6H5KL18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL18_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 3.470e-10
Identity = 31/58 (53.45%), Postives = 41/58 (70.69%), Query Frame = 0
Query:    2 KLQKSLYGIVQASCNWNALLVASLLELGLEQCEADPCLFRWMLDGELVLTMLIRVDDM 59
            +L KSLYG+ QAS  W ALL   LL LG EQC AD C+FR +  G++VL +++ VDD+
Sbjct:  426 QLNKSLYGLRQASREWYALLKKCLLALGFEQCMADSCVFRLVEGGDVVLLLVVHVDDI 483          
BLAST of mRNA_C-tenellus_contig9962.2.1 vs. uniprot
Match: A0A6H5JSV9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSV9_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 3.870e-10
Identity = 31/58 (53.45%), Postives = 39/58 (67.24%), Query Frame = 0
Query:    2 KLQKSLYGIVQASCNWNALLVASLLELGLEQCEADPCLFRWMLDGELVLTMLIRVDDM 59
            +L KSLYG+ QAS  W ALL   LL LG EQC AD C+F  +  GE+VL + + VDD+
Sbjct:   70 QLNKSLYGLRQASREWYALLKKCLLALGFEQCMADSCVFSLVEKGEVVLILAVHVDDI 127          
BLAST of mRNA_C-tenellus_contig9962.2.1 vs. uniprot
Match: A0A6H5KIL0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIL0_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 4.790e-10
Identity = 32/60 (53.33%), Postives = 42/60 (70.00%), Query Frame = 0
Query:    2 KLQKSLYGIVQASCNWN--ALLVASLLELGLEQCEADPCLFRWMLDGELVLTMLIRVDDM 59
            +L KSLYG+ QAS  W   ALL   LL LG EQC ADPC+FR++  GE+VL +++  DD+
Sbjct:  717 QLNKSLYGLRQASREWEWYALLKKCLLALGFEQCMADPCVFRFVEGGEVVLLLVVHADDI 776          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9962.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JWK8_9PHAE1.390e-1156.90Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K307_9PHAE2.080e-1156.90Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KFD2_9PHAE9.720e-1155.17Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KEU9_9PHAE1.140e-1054.24Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JBR0_9PHAE1.320e-1055.17Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KG67_9PHAE1.840e-1055.17Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KKQ0_9PHAE2.990e-1041.94Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KL18_9PHAE3.470e-1053.45Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JSV9_9PHAE3.870e-1053.45Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KIL0_9PHAE4.790e-1053.33Integrase catalytic domain-containing protein n=1 ... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 1..65
e-value: 2.8E-9
score: 36.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9962contigC-tenellus_contig9962:2050..2268 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9962.2.1mRNA_C-tenellus_contig9962.2.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig9962 2050..2268 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig9962.2.1 ID=prot_C-tenellus_contig9962.2.1|Name=mRNA_C-tenellus_contig9962.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=73bp
WKLQKSLYGIVQASCNWNALLVASLLELGLEQCEADPCLFRWMLDGELVL
TMLIRVDDMLMSSKGSNPNPWI*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2