mRNA_C-tenellus_contig9886.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9886.2.1
Unique NamemRNA_C-tenellus_contig9886.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig9886.2.1 vs. uniprot
Match: D7G4U8_ECTSI (SH3 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4U8_ECTSI)

HSP 1 Score: 145 bits (365), Expect = 3.940e-39
Identity = 76/131 (58.02%), Postives = 94/131 (71.76%), Query Frame = 1 
Query:   67 PVGAVATSLVNTDGA---AVVREENGGEKEVVAAPQMTNPYKLDVETGATVTASYPFQGDDELKQLSFTVGDRITVVEKEEMWSWGKLEKGGKEGWFPHNYVGSMFKPLPGIHEMAAKARERRERQEAAAA 450
            P GAVAT++++       A   +    E+EV A P   NPY+L V+ GATVTASYPF+G++ L+QLSF VGD I V +KE+MWSWG L +GG EGWFPHNYVG+ FKPLPGIHEMAAK + R E+  AA A
Sbjct:   63 PPGAVATAMLSGGEGLPFAGKTQHEQQEEEVQARPN--NPYELMVQPGATVTASYPFRGEESLQQLSFAVGDEIRVKQKEDMWSWGVLVRGGNEGWFPHNYVGTTFKPLPGIHEMAAKLKARNEKAAAAKA 191
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BLAST of mRNA_C-tenellus_contig9886.2.1 vs. uniprot
Match: D7FJI7_ECTSI (Pleckstrin homology (PH) domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJI7_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 2.770e-27
Identity = 59/125 (47.20%), Postives = 82/125 (65.60%), Query Frame = 1 
Query:   73 GAVATSLVNTDGAAVVREENGGEKEVVAAPQMTNPYKLDVETGATVTASYPFQGDDELKQLSFTVGDRITVVEKEEMWSWGKLEKGGKEGWFPHNYVGSMFKPLPGIHEMAAKARERRERQEAAA 447
            GA A  +    G A  +E  G +      P +   +KL VE GATV+A++PF GD    QLSF +GD I +++K+E+WSWGKLEK G+EGWFPHNYV + F+PLPG+HE+  +   ++ R+EA A
Sbjct:    5 GAAAQGV---QGEAWSQEAAGQQMSGDGPPNVDAAFKLQVEEGATVSATFPFFGDLAGGQLSFQIGDNIKLLQKDELWSWGKLEKSGEEGWFPHNYVQASFQPLPGMHELQQRILIKKAREEAIA 126
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BLAST of mRNA_C-tenellus_contig9886.2.1 vs. uniprot
Match: A0A836C9Y6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9Y6_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.440e-24
Identity = 50/88 (56.82%), Postives = 66/88 (75.00%), Query Frame = 1 
Query:  178 YKLDVETGATVTASYPFQGDDELKQLSFTVGDRITVVEKEEMWSWGKLEKGGKEGWFPHNYVGSMFKPLPGIHEMAAKARERRERQEA 441
            +KL VE G  V A++PF GD E  QLSF +GD I V++K+E+WSWG+L + G+EG+FPHNYV + FKPLPG+HE+  K   +R RQEA
Sbjct:    7 FKLVVEEGGVVEATFPFHGDVEGSQLSFQIGDTIKVLQKDELWSWGQLVRTGEEGYFPHNYVQATFKPLPGMHELKMKMAIKRARQEA 94
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BLAST of mRNA_C-tenellus_contig9886.2.1 vs. uniprot
Match: A0A0V1M1R5_9BILA (Intersectin-1 (Fragment) n=1 Tax=Trichinella papuae TaxID=268474 RepID=A0A0V1M1R5_9BILA)

HSP 1 Score: 53.1 bits (126), Expect = 2.960e-5
Identity = 27/51 (52.94%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:  211 TASYPFQGDDELKQLSFTVGDRITVVEKEEMWSWGKLEKGGKEGWFPHNYV 363
            TA Y   G  E   LSF  GDRI +VE++EMW  G+L+  G+EGWFP +YV
Sbjct:  108 TALYNLHGKSE-NHLSFNKGDRIRIVEQQEMWWKGELDD-GREGWFPKSYV 156
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BLAST of mRNA_C-tenellus_contig9886.2.1 vs. uniprot
Match: A0A0V1HTU2_9BILA (Intersectin-2 n=8 Tax=Trichinella TaxID=6333 RepID=A0A0V1HTU2_9BILA)

HSP 1 Score: 53.1 bits (126), Expect = 3.070e-5
Identity = 27/51 (52.94%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:  211 TASYPFQGDDELKQLSFTVGDRITVVEKEEMWSWGKLEKGGKEGWFPHNYV 363
            TA Y   G  E   LSF  GDRI +VE++EMW  G+L+  G+EGWFP +YV
Sbjct:  934 TALYNLHGKSE-NHLSFNKGDRIRIVEQQEMWWKGELDD-GREGWFPKSYV 982
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BLAST of mRNA_C-tenellus_contig9886.2.1 vs. uniprot
Match: C4LUC7_ENTHI (Unconventional myosin IB n=8 Tax=Entamoeba TaxID=5758 RepID=C4LUC7_ENTHI)

HSP 1 Score: 52.0 bits (123), Expect = 7.420e-5
Identity = 26/52 (50.00%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:  208 VTASYPFQGDDELKQLSFTVGDRITVVEKEEMWSWGKLEKGGKEGWFPHNYV 363
            V A YP+   ++ ++LSF VGD IT++EK+E W  G+L   G+EGW P+NYV
Sbjct:  998 VKALYPYTAAND-EELSFKVGDIITILEKDEGWWKGELN--GQEGWIPNNYV 1046
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9886.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G4U8_ECTSI3.940e-3958.02SH3 domain-containing protein n=2 Tax=Ectocarpus T... [more]
D7FJI7_ECTSI2.770e-2747.20Pleckstrin homology (PH) domain-containing protein... [more]
A0A836C9Y6_9STRA1.440e-2456.82Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0V1M1R5_9BILA2.960e-552.94Intersectin-1 (Fragment) n=1 Tax=Trichinella papua... [more]
A0A0V1HTU2_9BILA3.070e-552.94Intersectin-2 n=8 Tax=Trichinella TaxID=6333 RepID... [more]
C4LUC7_ENTHI7.420e-550.00Unconventional myosin IB n=8 Tax=Entamoeba TaxID=5... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9886contigC-tenellus_contig9886:1364..5581 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FJI7
PFAMsMORN,PH,RhoGEF
Model size450
Max annot lvl2759|Eukaryota
KEGG koko:K05720,ko:K20045
KEGG Pathwayko04810,map04810
Hectar predicted targeting categoryother localisation
Exons3
Evalue4.54e-28
EggNOG OGsCOG5422@1|root,KOG4424@2759|Eukaryota
Ec32 ortholog descriptionSH3 domain
Ec32 orthologEc-20_000270.1
DescriptionRho guanyl-nucleotide exchange factor activity
Cds size450
COG categoryT
BRITEko00000,ko00001,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790205.996001-CDS-C-tenellus_contig9886:1363..14691680790205.996001-CDS-C-tenellus_contig9886:1363..1469Choristocarpus tenellus KU2346CDSC-tenellus_contig9886 1364..1469 -
1680790206.00754-CDS-C-tenellus_contig9886:4741..48211680790206.00754-CDS-C-tenellus_contig9886:4741..4821Choristocarpus tenellus KU2346CDSC-tenellus_contig9886 4742..4821 -
1680790206.019351-CDS-C-tenellus_contig9886:5317..55811680790206.019351-CDS-C-tenellus_contig9886:5317..5581Choristocarpus tenellus KU2346CDSC-tenellus_contig9886 5318..5581 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9886.2.1prot_C-tenellus_contig9886.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9886 1364..5581 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9886.2.1

>prot_C-tenellus_contig9886.2.1 ID=prot_C-tenellus_contig9886.2.1|Name=mRNA_C-tenellus_contig9886.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=150bp
MDQGGQTEDVAPVTENQRVAYRPVGAVATSLVNTDGAAVVREENGGEKEV
VAAPQMTNPYKLDVETGATVTASYPFQGDDELKQLSFTVGDRITVVEKEE
MWSWGKLEKGGKEGWFPHNYVGSMFKPLPGIHEMAAKARERRERQEAAAA
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mRNA from alignment at C-tenellus_contig9886:1364..5581-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9886.2.1 ID=mRNA_C-tenellus_contig9886.2.1|Name=mRNA_C-tenellus_contig9886.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4218bp|location=Sequence derived from alignment at C-tenellus_contig9886:1364..5581- (Choristocarpus tenellus KU2346)
ATGGATCAGGGTGGCCAAACAGAAGATGTCGCTCCCGTTACGGAGAATCA
ACGCGTTGCCTACAGACCAGTGGGAGCTGTCGCGACGTCCTTGGTCAATA
CTGATGGAGCTGCAGTTGTTAGGGAAGAGAATGGAGGGGAGAAGGAAGTT
GTGGCAGCTCCCCAGATGACCAATCCCTACAAATTGGATGTCGAGACCGG
GGCAACGGTCACTGCATCTTACCCATTTCAGGGAGATGACGAACTGAAGC
AATTGTCCTTTACTGTGAGACCTTTGGTGCCGAGTGATATTAATTTTGGC
CTATTGAAGAAACCATACTTTTTTTTGGCTGACTCATGCGTTTTACCTCA
TAGGTCGAACGATCTCCTCACTTCGAAGTCAGCACTATTTCCAAGTATGG
CTGAGCTCCACTCTGAATTACAGAGGGATTTCTTCTTTTTTGGGTTTTGC
GAGTGTGTTGGTGATGCGTGTAGTTGCGAAATCCAGAATGTTGAACAAAG
TTGGTGCAAGCAGATGTTGGTATTGACCACCTTCCACGGTGTACCTGTAC
AAAATACTTTGTATTAGGAGGACCCAGGCGTCCAAAGGCGAAAGGAATTA
GGGGCCTGCGTTTGTGTTAAGAAGTAAGCTGTGACAGGGAGTTACCGACA
AAGTAAATGTGTCCTTGGGGTTGGGTTGAGTTTGAAGCACCAATGCAGAT
GCAGATCCCATCATACTGATTCGAGATGATGCTTGCCCCGCCCACTCTCT
TACAAAATAGGTTGGCGATCGGATCACCGTGGTGGAGAAGGAGGAGATGT
GGAGCTGGGGAAAGCTAGAGAAGGGGGGCAAAGAAGGGTGGTGAGTTTGC
GGGAGGTATCAAACTCTCCGTCTTGTTTAGGGCCAGATACAAGCTTTGGC
AGAAAGTTGGGGGGTCAGTTGTACTCTGCACTTTACCTTAGTTTTAGATC
CCCATATACCTCTTGGAACCACAACAGTGGTGAGCTCAACATGATTCTAA
ACAAGTGTGTAGACCATTCTTCACGATAGCTTGTCATCAGTTTGGGAAAA
TGCGAACGGACCATTCCGTCAGCAAGCCCCGTTCCAACATTTATAGGGCT
GTGGTCTAGGGTGTCACACGTTTTAACATAATCGATCCAGGGCTATAAGT
TATTGCAATGGTGATAATCCGTGGGGTGTCAGAAAACTTAACTGGGCCTG
CTCTTATCTAATCCCCGATCTGTCCGTGTATTAATTGTGAATTGTGTGGA
TCCTGCAAAATGTTGAAGTGTTGAAATGTGAAAGTATATGTTTTTTTTTG
TATATTCTTCCAGTAAGAAGCTGTAACAAGAGTTGCACTATTTGGAGCCT
TGGATGTGGAAACGGGCTGCTGACACCTGAAGTCCTCAACAAGACTTTGA
CGAGAGTATGGACACAAAGGCAGTCAGCACACATCCGTGAAAGGGTTATG
TCGATTGCGATTTAATGCTTGACACTAATGAACGTGTGTTGTGCCCTTAC
CTTTGCCCCTCGAAAATTTTGCAAAATATCAGAGGGCATGCATTATTTCA
GTTTCTGCTGCTCCTGAGTTGTCTGGATTGTGGAAAATAGCTAGGTATAA
AATAATAGAGGGACACTCATTGGGCCAGGCTGTAGTCTGACTAGTAGTAA
CCTGTAGGATAAACACTCGAGAAATGAGACTGCAATTAGATGCTTGGGAG
GAACAGCTTTCAAAGAAAAAAGATAAGAGTCGAAATGAGTTGACACAGAT
TGCAGCAACTCGTGGGGTGCACATAATGATCATGAGGACATGGATGGTGC
CAAGGTAGGGCAAGCACATAATGCTCAGAATGGGGAGCAGGTGCGCAATA
CCAGAGACTGTATGATAACATTACTTACAGGAAGGGGGTGAGGAGATAGA
GCCTGTCAGTGCCAGCACAACCTGGAGTGAACAGCTGTCATAGCCACTGT
TGATAGTATTATAGTTTTTTGTATTATTCTCACTGTGGATTCTCCTCTCA
ACAATTTTTTTCGTTGCAGGGCTGAAGGGTTGGCCCAACAACCCAACACT
TCTTGACAAGACTGACCTGGAACTGTCTATCAGATATTTTTACAGGATTT
GTTGTAGGCTCGCTTTGTACCAATACTCTTTGTCAGGCCTGGTCCAAGGT
GGTCAGATATTTTGACAGGACTGGTCTGTAGTTCAAAAAAAGGCCTTGGT
TAACTTTCTACTCTTGATACTATGTGCAGAGATGCAATATTTCTGATGAT
GTTGAATCAGGTCATGAATGTGTCTACGACTCCGATGATGTTGATTTGAG
GACATGGTGTAGCCAACAAGTCCAATCTCTCCACATGCTGGGAACGCCAT
TCCTCATGTGTATCATCCTCATGTGTGTCTTTGTTATCATGAGGGGGATG
ACAACAAAAGAAAGACAGAGGTGGGGATGGATCCGAGCTCTAGAGAACAA
ATTCCTGGCCTAAATAACAAATAACTCACAACCTGGAAAGAGGAAAATAC
AGGGCTTTATGCTGGACCAGGAAGCTGTGATGGGGGCAGGCAGGCTGTGA
GCTGGATGTGGAAGAATGTTTTTTGAAGAACTAGACCAGGGCTGTAGAAG
CTTTTGCAGGATTGTGCCATGAGCTGAGTTGTTAAGGATGTTTTGCAGAG
AGACAGGCAGGGGCCTTGGGAAATTAGGCGGGACGAGACGATTAGAGCTT
CCTGATGATGTTTTGGTCCATGTATACAACATTCCCTTTTTTTCTTGAAG
TAGTATTTATTGTGACTATTGCGACTATTGTGTTGCATGGACCATACAAG
ACAGGGCATAGCAGAACCACCTGGCTTGATGGCTATTGATGTCTATTGAT
GTCTATTGATGGAGCAATGTTCATCCACCGCCCATGCTCAAAATGGGTCA
GTTCCACCGGAAGTGGTAGGGGGGGAGGGTTGCTAAAGCATTTCGTTCGA
TGTACTGGGGGAGTTAGCTGCTACTGTTGGGGTAGTTGAACTCACAGTCA
GGGAGCATATCCAACAGGCAGCACCAGTTGAGGCCTTGCAGGGGGCAATG
GGACTCACATCAAGGGATGTGCAGAGTGAGCAAGACAATGACCTGATTGA
GTTGTTGCAAGGATAGGGTTGAAGATTCCTGTGCTCGGTCAATCTTGCTT
CCTGAATTTTGTCCATTCCTATTACACTGGCAGGCATGCAACATATGTCC
TCAAAATGTTTGGAAAAAGTCACTTAAGAATGATGCAGGGCAGGGCCAGA
AATAGTGGAACTCCTCATGTTCATGCTCGTGCATAACGCCTGACTGGAGA
AGGATGCCTTATAGTGGGTTGCTGAGGATTGCAAGACGAAGGCTAAGATA
TGAAGAGTACACACAGTACGGACAGGCTTGTGTAGCTACAAGTAGATTGT
TAATTTTTTACAAACTTTTCAGCCACCCCTTCTTTAGCCTTTCAAGCAAA
GCATGAGATAGAAGTGTCTCTCAAACAAGAAATATTGTGTGTGTGTGTGT
GTGTGTTAGTGGTATGAGACCTCGGGAGTAAGAGTATCTTTAAAAACATG
CCTCCTGTGGGTCTCCTCACCAAGGCGATGGGCTCGTTGGCCTTGTGCTA
TGCTCACGCTCAGATTAAGCGGGTACATTGATAGTTTCTGAGCTGATTCT
ATTTGTACATCACCCTCAATTTTATCAACATTACGGTTTTGGTGTGTAGT
GTTGAGGGAAAGGCTCGACACTTTTGTGCTGCTGCTTAGACACTCTTTTT
GGTTCATGATGATCAGAATGTGTTAACTTTCTCAGCTAGCTCTTAGTTGT
ACATTGTGGTGTTCTCACGTAGATGGATTACTTGCCAGATTCACTGCTTA
AGTGTTCTCCGGTATGCTTGTGGTTTGTGTTTTTTCAGGCTGTTGAACAG
CACATCATGAATGGGAAAAAATCTCGACACAACTTTTAGAACAAACTCCT
CTTCTCAATGTCTTTCCACAGCCCAGGCACTATGTGCCTAAGAAAAAGAG
GTTTGGGTCATGATGGTGTTGAAGCCCCCGCTGGGAATCCGTCTCATGGT
TCAGTACGTGTATTATTTTACCATTGCTGGATTTTGATTACATATGCCCC
TCTGGCTGGCAGGTTCCCACATAACTATGTGGGGTCCATGTTCAAGCCTT
TGCCAGGAATCCATGAAATGGCCGCCAAGGCCCGTGAAAGGCGAGAAAGG
CAAGAGGCAGCGGCGGCA
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Coding sequence (CDS) from alignment at C-tenellus_contig9886:1364..5581-

>mRNA_C-tenellus_contig9886.2.1 ID=mRNA_C-tenellus_contig9886.2.1|Name=mRNA_C-tenellus_contig9886.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=450bp|location=Sequence derived from alignment at C-tenellus_contig9886:1364..5581- (Choristocarpus tenellus KU2346)
ATGGATCAGGGTGGCCAAACAGAAGATGTCGCTCCCGTTACGGAGAATCA
ACGCGTTGCCTACAGACCAGTGGGAGCTGTCGCGACGTCCTTGGTCAATA
CTGATGGAGCTGCAGTTGTTAGGGAAGAGAATGGAGGGGAGAAGGAAGTT
GTGGCAGCTCCCCAGATGACCAATCCCTACAAATTGGATGTCGAGACCGG
GGCAACGGTCACTGCATCTTACCCATTTCAGGGAGATGACGAACTGAAGC
AATTGTCCTTTACTGTTGGCGATCGGATCACCGTGGTGGAGAAGGAGGAG
ATGTGGAGCTGGGGAAAGCTAGAGAAGGGGGGCAAAGAAGGGTGGTTCCC
ACATAACTATGTGGGGTCCATGTTCAAGCCTTTGCCAGGAATCCATGAAA
TGGCCGCCAAGGCCCGTGAAAGGCGAGAAAGGCAAGAGGCAGCGGCGGCA
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