mRNA_C-tenellus_contig9778.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9778.1.1
Unique NamemRNA_C-tenellus_contig9778.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig9778.1.1 vs. uniprot
Match: D7FKD9_ECTSI (MutS protein homolog 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKD9_ECTSI)

HSP 1 Score: 298 bits (764), Expect = 9.330e-94
Identity = 158/286 (55.24%), Postives = 208/286 (72.73%), Query Frame = 1
Query:    1 QDGVEVVMQAENNEISRQLRSLLSKSNDMTRTLLRIKKVSANHVDWCRLLQALESTLAIQDVLHILQRRVEAPA-------HASFLQHLVERVDGPSLRHCLDDVSTVIDQAATVEEKDMVIRTGYCPKLDQLKQTLADLGELLRTVGQVVLSDNPLLEELSVEYVPQIGFLTALTSASEDLVPQDFTFAFAQGDVVYYKNTHMLELDDEIGDIQAQIADLQASLIRHLEETVLEREGALHHAAAAMGELDATLALASVATDFGFVRPQVVEQNVIVIKNGRHPLQ 837
            QDGVEV+MQAEN EI R+LRS LSKS  MTR ++RIKKV+    DWC+L+ ++ES L ++D L +++    A         + SFL  L++ +D   LR CL+ + TVID  A+ ++KD+VIR G+  +LD +++ L DL ++L+ +GQ+VL++N +LEELSVEYVPQIGF T L     DL P DFTFAFAQG+ VYYK+  M ++DD IGDIQA I D QA ++R LE+ ++  EGALH AA+ + ELDA LALASVA DFGFVRP+VVE NVI+IKNGRHPLQ
Sbjct:  129 QDGVEVLMQAENAEICRRLRSQLSKSYGMTRIIMRIKKVAWTFADWCKLITSIESALDVRDGLALMRTSAGAAVTVGGRFGNESFLARLLDDIDPVVLRKCLEGLCTVIDPVASAQDKDVVIRPGFDEELDNMRERLEDLPDILQQIGQIVLNENSVLEELSVEYVPQIGFFTTLHERFGDLAPDDFTFAFAQGETVYYKSPTMRDVDDRIGDIQALITDKQAKIMRELEDALIAEEGALHAAASVLAELDAALALASVAGDFGFVRPEVVEDNVIMIKNGRHPLQ 414          
BLAST of mRNA_C-tenellus_contig9778.1.1 vs. uniprot
Match: A0A4D9D1J2_9STRA (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1J2_9STRA)

HSP 1 Score: 150 bits (378), Expect = 1.210e-37
Identity = 101/304 (33.22%), Postives = 154/304 (50.66%), Query Frame = 1
Query:   10 VEVVMQAENNEISRQLRSLLSKSNDMTRTLLRIKKVSANHVDWCRLLQALESTLAIQDVLHIL----------------------QRRVEAPAHASF--LQHLVERVDGPSLRHCLDDVSTVIDQAATVEEKDMVIRTGYCPKLDQLKQTLADLGELLRTVGQVVLSD--NPLLEELSVEYVPQIGFLTALTSASEDLVPQD--FTFAFAQGDVVYYKNTHMLELDDEIGDIQAQIADLQASLIRHLEETVLEREGALHHAAAAMGELDATLALASVATDFGFVRPQVVEQNVIVIKNGRHPLQ 837
            VE+++  E  E+      LL K  D+ R L R+++  +   DW  L    E  L +Q  L +L                       R  E P  ++   LQ  ++R+   ++    + ++ V+D   T E K + +R G   +LD+L+     L E L    + VL++  + LL ++SV+++PQ+GFL  + +     V  D  F F FA+GD +YYK   M  LDD IGD+ A I DL+  L+R L E +L+ E AL  A  A  ELD  +A A +A    +VRP V E+ V+V+K+GRHPLQ
Sbjct:    2 VELLLHPEAMEVVTNAGMLLGKVGDVQRILTRMRRAGSTVNDWLTLANTAEHVLLLQSCLAVLVHLTARLSSASDKGPTTAGEEEHRTNEGPYSSAMAMLQGFLDRISRQAVGRVSEALTKVLDLEVTRESKTVAVRMGCDEELDRLRGDYDGLEEFLSEEARGVLAEQSSQLLSKISVQFLPQVGFLVIVQANERIAVENDPRFRFLFAEGDALYYKTPRMDVLDDSIGDLSAAIQDLEGLLLRQLAEEILKEEIALTEAVRACAELDVLMAFAQLAGGLAWVRPMVTEERVVVVKDGRHPLQ 305          
BLAST of mRNA_C-tenellus_contig9778.1.1 vs. uniprot
Match: W7TMA2_9STRA (Mismatch repair protein 5 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TMA2_9STRA)

HSP 1 Score: 151 bits (381), Expect = 1.240e-37
Identity = 101/307 (32.90%), Postives = 156/307 (50.81%), Query Frame = 1
Query:    1 QDGVEVVMQAENNEISRQLRSLLSKSNDMTRTLLRIKKVSANHVDWCRLLQALESTLAIQDVLHIL---------------------QRRVEAPAHAS---FLQHLVERVDGPSLRHCLDDVSTVIDQAATVEEKDMVIRTGYCPKLDQLKQTLADLGELLRTVGQVVLSD--NPLLEELSVEYVPQIGFLTALTSASEDLVPQD--FTFAFAQGDVVYYKNTHMLELDDEIGDIQAQIADLQASLIRHLEETVLEREGALHHAAAAMGELDATLALASVATDFGFVRPQVVEQNVIVIKNGRHPLQ 837
            Q+ VE+++  E  E+      LL K  D+ R L R+++  +   DW  L    E  L +Q  L +L                     + R    +++S    LQ  ++R+   ++    + ++ V+D   T E K M +R G   +LD+L+     L E L    + VL++  + LL ++SV+++PQ+GFL  + +     V  D  F F FA+GD +YYK   M  LDD IGD+ A I D +  L+R L E +L+ E AL  A  A  ELD  +A A +A    +VRP V E+ V+V+K+GRHPLQ
Sbjct:  296 QNMVELLLHPEAMEVVTNAGMLLGKVGDIQRILTRMRRAGSTVNDWLTLANTAEHILLLQSCLAVLAHLTARLSSASDKGPTTAGEEEHRTNEGSYSSAMAMLQGFLDRISRQAVGRVSEALTKVLDLEITRESKSMAVRLGCDEELDRLRGDYDGLEEFLSEEARGVLAEQSSQLLSKISVQFLPQVGFLVIVQANERIAVENDPRFRFVFAEGDALYYKTPRMDVLDDSIGDLSAAIQDREGLLLRQLAEEILKEETALAEAVRACAELDVLMAFAQLAGGLAWVRPMVTEERVVVVKDGRHPLQ 602          
BLAST of mRNA_C-tenellus_contig9778.1.1 vs. uniprot
Match: W2LZG1_PHYPR (DNA_MISMATCH_REPAIR_2 domain-containing protein n=10 Tax=Phytophthora parasitica TaxID=4792 RepID=W2LZG1_PHYPR)

HSP 1 Score: 133 bits (334), Expect = 1.630e-31
Identity = 91/270 (33.70%), Postives = 137/270 (50.74%), Query Frame = 1
Query:   31 ENNEISRQLRSLLSKSNDMTRTLLRIKKVSANHVDWCRLLQALESTLAIQDVLHILQRRVEAPAHASFLQHLVERVDGPSLRHCLDDVSTVIDQAATVEEKDMVIRTGYCPKLDQLKQTLADLGELLRTVGQVVLSDNPLLEELSVEYVPQIGFLTALTSASEDLVPQDFTFAFAQGDVV-YYKNTHMLELDDEIGDIQAQIADLQASLIRHLEETVLEREGALHHAAAAMGELDATLALASVATDFGFVRPQVVEQNVIVIKNGRHPLQ 837
            EN+E+ RQL  LL    D+     RIK+  A+  DWCR + ++ S L  Q ++        +P  + F +   ER     + H  + +  V+D   + +E  +VIR+G    LD  +Q   DL  +L  V   V   NP+L  ++V+Y+PQ+G++    S +   +P DF F F + D   YYK+    +LD+ IGDI   I DLQ  L+  L   +LE EG++H     M  LD  ++ AS A  F F RP + E + +     RHPLQ
Sbjct:  282 ENDEL-RQL--LLKHFRDVAGIFQRIKRRCASVGDWCRFITSIGSFLEAQSLIEDASETSISPLPSVFSRVKSER----GVTHVSNLLGNVVDFEESQQESTVVIRSGISDTLDAARQRYEDLDNVLTEVAFQVQEANPVLSSITVQYIPQVGYVICCESPTT--LP-DFVFQFQEDDTTFYYKDACCRDLDESIGDIYGYILDLQRELLEELTMALLEYEGSIHEMTWIMSNLDCLISFASCAKSFNFTRPLISEGSTLKATQARHPLQ 541          
BLAST of mRNA_C-tenellus_contig9778.1.1 vs. uniprot
Match: W2LZF6_PHYPR (DNA_MISMATCH_REPAIR_2 domain-containing protein n=24 Tax=Phytophthora parasitica TaxID=4792 RepID=W2LZF6_PHYPR)

HSP 1 Score: 133 bits (334), Expect = 2.180e-31
Identity = 91/270 (33.70%), Postives = 137/270 (50.74%), Query Frame = 1
Query:   31 ENNEISRQLRSLLSKSNDMTRTLLRIKKVSANHVDWCRLLQALESTLAIQDVLHILQRRVEAPAHASFLQHLVERVDGPSLRHCLDDVSTVIDQAATVEEKDMVIRTGYCPKLDQLKQTLADLGELLRTVGQVVLSDNPLLEELSVEYVPQIGFLTALTSASEDLVPQDFTFAFAQGDVV-YYKNTHMLELDDEIGDIQAQIADLQASLIRHLEETVLEREGALHHAAAAMGELDATLALASVATDFGFVRPQVVEQNVIVIKNGRHPLQ 837
            EN+E+ RQL  LL    D+     RIK+  A+  DWCR + ++ S L  Q ++        +P  + F +   ER     + H  + +  V+D   + +E  +VIR+G    LD  +Q   DL  +L  V   V   NP+L  ++V+Y+PQ+G++    S +   +P DF F F + D   YYK+    +LD+ IGDI   I DLQ  L+  L   +LE EG++H     M  LD  ++ AS A  F F RP + E + +     RHPLQ
Sbjct:  301 ENDEL-RQL--LLKHFRDVAGIFQRIKRRCASVGDWCRFITSIGSFLEAQSLIEDASETSISPLPSVFSRVKSER----GVTHVSNLLGNVVDFEESQQESTVVIRSGISDTLDAARQRYEDLDNVLTEVAFQVQEANPVLSSITVQYIPQVGYVICCESPTT--LP-DFVFQFQEDDTTFYYKDACCRDLDESIGDIYGYILDLQRELLEELTMALLEYEGSIHEMTWIMSNLDCLISFASCAKSFNFTRPLISEGSTLKATQARHPLQ 560          
BLAST of mRNA_C-tenellus_contig9778.1.1 vs. uniprot
Match: A0A225W605_9STRA (MUTSd domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W605_9STRA)

HSP 1 Score: 128 bits (321), Expect = 6.100e-31
Identity = 89/280 (31.79%), Postives = 136/280 (48.57%), Query Frame = 1
Query:    1 QDGVEVVMQAENNEISRQLRSLLSKSNDMTRTLLRIKKVSANHVDWCRLLQALESTLAIQDVLHILQRRVEAPAHASFLQHLVERVDGPSLRHCLDDVSTVIDQAATVEEKDMVIRTGYCPKLDQLKQTLADLGELLRTVGQVVLSDNPLLEELSVEYVPQIGFLTALTSASEDLVPQDFTFAFAQGDVV-YYKNTHMLELDDEIGDIQAQIADLQASLIRHLEETVLEREGALHHAAAAMGELDATLALASVATDFGFVRPQVVEQNVIVIKNGRHPLQ 837
            Q GV      EN+E+   L   L +  D+     RIKK  A+  DWCR + ++ S L  Q ++     +      + F + + ER     + +  + +  V+D   + +E  +VIR+G    LD  ++   DL  +L  V   V   NP L  ++V+Y+PQ+GF+  +   +   +P DF F F + D   YYK+    +LD+ IGDI   I D+Q  L   L   +LE E ++H     M  LD  ++ AS A  F F RPQV E + +     RHPLQ
Sbjct:   76 QSGVAYFADTENDELRHLLFGKLKRFRDVAGIFQRIKKRCASVGDWCRFVTSIGSFLEAQSLIEGTFDQNNDSLPSIFSRAISER----GIINVGNLLGNVMDFDESQQENMVVIRSGISETLDAARERYEDLDNILTEVAFQVQETNPALSSITVQYIPQVGFV--ICCEAHTTLP-DFVFQFQEDDATFYYKDGSCRDLDESIGDIYGYIVDIQRELQEELTMALLEYESSIHEMTWIMSYLDCLISFASCAKSFNFTRPQVTEDDSLKATQARHPLQ 348          
BLAST of mRNA_C-tenellus_contig9778.1.1 vs. uniprot
Match: A0A139AXG1_GONPJ (DNA_MISMATCH_REPAIR_2 domain-containing protein (Fragment) n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AXG1_GONPJ)

HSP 1 Score: 131 bits (330), Expect = 6.220e-31
Identity = 93/283 (32.86%), Postives = 147/283 (51.94%), Query Frame = 1
Query:    4 DGVEVVMQAEN-NEISRQLRSLLSKSNDMTRTLLRIKKVSANHVDWCRLLQALESTLAIQD---VLHILQRRVEAPAHASFLQHLVERVDGPSLRHCLDDVSTVIDQAATVEEKDMVIRTGYCPKLDQLKQTLADLGELLRTVGQVVLSDNPLLEELSVEYVPQIGFLTALT-SASEDLVPQDFTFAFAQGDVVYYKNTHMLELDDEIGDIQAQIADLQASLIRHLEETVLEREGALHHAAAAMGELDATLALASVATDFGFVRPQVVEQNVIVIKNGRHPLQ 837
            D VE++ + EN   +   L+++ S  N   R L+   +   +  DW RLL    +   +Q     LH+       P     L  +   +D  +L+     ++T++D   +     + I+ G   +LD+LK+T   LG+LL ++G  V ++ P L +++V Y PQ+G+L A   +A E L  +  TF F    +VYYKN  M +LD E+GD+ A IAD +   I+ L +  +E   ++  A   +GELD  LALA  A  + + RP + E NVI I NGRHP+Q
Sbjct:  248 DAVEILTKIENAGSVEFLLKAINSVGN--MRNLVSQVRTGLSLQDWGRLLSFTFNAAEVQTRCRELHLTPFIKRVP----ILDRIAREIDVETLKGIGGSINTIVDFDDSGRNGKVQIKHGVDEELDELKRTYEGLGDLLTSIGNDVQAELP-LGDITVVYFPQLGYLIASPKTAGESLDVEGLTFQFETDAIVYYKNDRMRQLDQELGDLHAMIADREIEWIQQLTDRAIEGADSILGAYDVIGELDCLLALADAARKYRYKRPMLTEDNVIKIVNGRHPIQ 523          
BLAST of mRNA_C-tenellus_contig9778.1.1 vs. uniprot
Match: A0A329SGH8_9STRA (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SGH8_9STRA)

HSP 1 Score: 130 bits (328), Expect = 1.370e-30
Identity = 87/271 (32.10%), Postives = 136/271 (50.18%), Query Frame = 1
Query:   28 AENNEISRQLRSLLSKSNDMTRTLLRIKKVSANHVDWCRLLQALESTLAIQDVLHILQRRVEAPAHASFLQHLVERVDGPSLRHCLDDVSTVIDQAATVEEKDMVIRTGYCPKLDQLKQTLADLGELLRTVGQVVLSDNPLLEELSVEYVPQIGFLTALTSASEDLVPQDFTFAFAQGDVV-YYKNTHMLELDDEIGDIQAQIADLQASLIRHLEETVLEREGALHHAAAAMGELDATLALASVATDFGFVRPQVVEQNVIVIKNGRHPLQ 837
            AEN+E+ + L   L +  D+     RIK+  A+  DWCR + ++ S L  Q ++  +     +P    F +   ER     +    + +  V+D   + +E  +VIR+G    LD  ++   DL  +L  V   V   NP+L  ++V+Y+PQ+G++    S +   +P DF F F + D   YYK+    +LD+ IGDI   I D+Q  L+  L   +LE E ++H     M  LD  ++ AS A  F F RPQ+ E N +     RHPLQ
Sbjct:  297 AENDELRQHLLGKLKRFRDVGGIFGRIKRRCASVNDWCRFVTSIGSFLEAQSLIESVCETSNSPLPNVFSRVKNER----GVIQVSNLLGNVVDFEESQQESTVVIRSGVSETLDAARERYEDLDNVLTEVAFQVQEANPVLSSITVQYIPQVGYVICCESPTT--LP-DFVFQFQEDDTTFYYKDACCRDLDESIGDIYGYILDIQRELLEELTMALLEYESSIHEMTWIMSYLDCLISFASCAKSFNFTRPQISEGNTLKAIQARHPLQ 560          
BLAST of mRNA_C-tenellus_contig9778.1.1 vs. uniprot
Match: A0A177SX17_9BASI (MutS_IV domain-containing protein (Fragment) n=2 Tax=Tilletia TaxID=13289 RepID=A0A177SX17_9BASI)

HSP 1 Score: 116 bits (291), Expect = 3.170e-28
Identity = 71/198 (35.86%), Postives = 107/198 (54.04%), Query Frame = 1
Query:  259 DGPSLRHCLDDVSTVIDQAATVEEKDMVIRTGYCPKLDQLKQTLADLGELLRTVGQVVLSD-NPLLEELSVEYVPQIGFLTAL--TSASEDLVP--QDFTFAFAQGDVVYYKNTHMLELDDEIGDIQAQIADLQASLIRHLEETVLEREGALHHAAAAMGELDATLALASVATDFGFVRPQVVEQNVIVIKNGRHPLQ 837
            D   L  C  +++ +ID   +  E  + I+TGY  +LDQ KQ  A L +LL  + Q +  D +P  +E++V Y PQ+G+L A+  T    D +P    + F FA  + +Y+K   M +LD  +GDI   I + +   +  L+E + +    L   A    ELD  LALA  AT FG+V P++ ++NVI I  GRH LQ
Sbjct:    3 DKKVLNFCSQNIAGIIDFDESASESRICIKTGYDEELDQWKQLYAGLPDLLNRIAQDIRPDVDPKFKEITVCYFPQLGYLLAIPVTEDMSDQLPTLDGWDFQFASENAMYFKGDKMRDLDTHLGDIHTFIVEREIEHLFALQEAICQHASVLLQIADLFAELDCLLALAEAATRFGWVCPEMTQENVIEIYQGRHALQ 200          
BLAST of mRNA_C-tenellus_contig9778.1.1 vs. uniprot
Match: A0A397IPB7_9GLOM (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397IPB7_9GLOM)

HSP 1 Score: 119 bits (297), Expect = 1.470e-26
Identity = 88/283 (31.10%), Postives = 143/283 (50.53%), Query Frame = 1
Query:   10 VEVVMQAENNEISRQLRSLLSKSNDMTRTLLRIKKVSANHVDWCRLLQALESTLAIQDVLHILQRRVEAPAHASFLQHLVERVDGPSLRHCLDDVSTVIDQAATVEEKDMVIRTGYCPKLDQLKQTLADLGELLRTVGQVVLSDNP--LLEELSVEYVPQIGFLTALTSASEDLVPQDFT-----FAFAQGDVVYYKNTHMLELDDEIGDIQAQIADLQASLIRHLEETVLEREGALHHAAAAMGELDATLALASVATDFGFVRPQVVEQNVIVIKNGRHPLQ 837
            +E  ++ +N EIS QL S L    ++ + + ++K    N  DW       +  L + D  HI  RRV+   +   L  + E      L+    +++ VID   +V+E  +VI+     +LD +K+T   L + L  V + + +  P      L+V Y PQ+G+L  +    E    QDF      + F+   +VYYKN  M ELD+ +GDI   I D +   ++ L++  LE    L +A+    ELD  L+LA  A  +G+ RP + E+N+++I+ GRHPLQ
Sbjct:   95 IECFLKTDNLEISNQLASCLKHIKNIPKIIEKMKG-KLNVKDW-------QYALQVND-RHIELRRVD---NVKILDRIKEIFVVSDLKDIGSNINDVIDFDESVKENRIVIKPHIDEELDHMKRTYDGLDDFLSEVAREISTTIPTEFASTLNVIYFPQLGYLITVPLKPEWKEEQDFQINGLYYQFSTATIVYYKNDKMRELDEYLGDIHGLIVDREIETVQKLQDRTLEHVPLLLNASTVCSELDCYLSLAESARRYGYRRPFLTEENILMIEKGRHPLQ 365          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9778.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKD9_ECTSI9.330e-9455.24MutS protein homolog 5 n=1 Tax=Ectocarpus siliculo... [more]
A0A4D9D1J2_9STRA1.210e-3733.22DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
W7TMA2_9STRA1.240e-3732.90Mismatch repair protein 5 n=1 Tax=Nannochloropsis ... [more]
W2LZG1_PHYPR1.630e-3133.70DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
W2LZF6_PHYPR2.180e-3133.70DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
A0A225W605_9STRA6.100e-3131.79MUTSd domain-containing protein n=1 Tax=Phytophtho... [more]
A0A139AXG1_GONPJ6.220e-3132.86DNA_MISMATCH_REPAIR_2 domain-containing protein (F... [more]
A0A329SGH8_9STRA1.370e-3032.10DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
A0A177SX17_9BASI3.170e-2835.86MutS_IV domain-containing protein (Fragment) n=2 T... [more]
A0A397IPB7_9GLOM1.470e-2631.10DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9778contigC-tenellus_contig9778:554..5741 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FKD9
Preferred nameMSH5
PFAMsMutS_III,MutS_IV,MutS_V
Model size837
Max annot lvl2759|Eukaryota
KEGG koko:K08741
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000228,GO:0000280,GO:0000710,GO:0000712,GO:0000793,GO:0000794,GO:0000795,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007129,GO:0007131,GO:0007276,GO:0007292,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0010777,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019953,GO:0022402,GO:0022414,GO:0022607,GO:0030983,GO:0031974,GO:0031981,GO:0032501,GO:0032504,GO:0033554,GO:0034641,GO:0035825,GO:0042623,GO:0043073,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0045132,GO:0045143,GO:0046483,GO:0048285,GO:0048609,GO:0050896,GO:0051026,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051704,GO:0051716,GO:0061982,GO:0070013,GO:0070192,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0098813,GO:0099086,GO:0140013,GO:1901360,GO:1901363,GO:1903046
Exons8
Evalue4.86e-90
EggNOG OGsCOG0249@1|root,KOG0221@2759|Eukaryota
Descriptionchiasma assembly
Cds size816
COG categoryL
BRITEko00000,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9778.1.1prot_C-tenellus_contig9778.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9778 575..5741 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790200.6639326-UTR-C-tenellus_contig9778:553..5741680790200.6639326-UTR-C-tenellus_contig9778:553..574Choristocarpus tenellus KU2346UTRC-tenellus_contig9778 554..574 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790200.6788707-CDS-C-tenellus_contig9778:574..6671680790200.6788707-CDS-C-tenellus_contig9778:574..667Choristocarpus tenellus KU2346CDSC-tenellus_contig9778 575..667 +
1680790200.6888099-CDS-C-tenellus_contig9778:1133..12691680790200.6888099-CDS-C-tenellus_contig9778:1133..1269Choristocarpus tenellus KU2346CDSC-tenellus_contig9778 1134..1269 +
1680790200.70469-CDS-C-tenellus_contig9778:1634..17261680790200.70469-CDS-C-tenellus_contig9778:1634..1726Choristocarpus tenellus KU2346CDSC-tenellus_contig9778 1635..1726 +
1680790200.7168574-CDS-C-tenellus_contig9778:2928..30121680790200.7168574-CDS-C-tenellus_contig9778:2928..3012Choristocarpus tenellus KU2346CDSC-tenellus_contig9778 2929..3012 +
1680790200.7279525-CDS-C-tenellus_contig9778:3500..36321680790200.7279525-CDS-C-tenellus_contig9778:3500..3632Choristocarpus tenellus KU2346CDSC-tenellus_contig9778 3501..3632 +
1680790200.7370646-CDS-C-tenellus_contig9778:4810..48971680790200.7370646-CDS-C-tenellus_contig9778:4810..4897Choristocarpus tenellus KU2346CDSC-tenellus_contig9778 4811..4897 +
1680790200.7521887-CDS-C-tenellus_contig9778:5155..52961680790200.7521887-CDS-C-tenellus_contig9778:5155..5296Choristocarpus tenellus KU2346CDSC-tenellus_contig9778 5156..5296 +
1680790200.7640138-CDS-C-tenellus_contig9778:5690..57411680790200.7640138-CDS-C-tenellus_contig9778:5690..5741Choristocarpus tenellus KU2346CDSC-tenellus_contig9778 5691..5741 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9778.1.1

>prot_C-tenellus_contig9778.1.1 ID=prot_C-tenellus_contig9778.1.1|Name=mRNA_C-tenellus_contig9778.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=272bp
MQAENNEISRQLRSLLSKSNDMTRTLLRIKKVSANHVDWCRLLQALESTL
AIQDVLHILQRRVEAPAHASFLQHLVERVDGPSLRHCLDDVSTVIDQAAT
VEEKDMVIRTGYCPKLDQLKQTLADLGELLRTVGQVVLSDNPLLEELSVE
YVPQIGFLTALTSASEDLVPQDFTFAFAQGDVVYYKNTHMLELDDEIGDI
QAQIADLQASLIRHLEETVLEREGALHHAAAAMGELDATLALASVATDFG
FVRPQVVEQNVIVIKNGRHPLQ
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mRNA from alignment at C-tenellus_contig9778:554..5741+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9778.1.1 ID=mRNA_C-tenellus_contig9778.1.1|Name=mRNA_C-tenellus_contig9778.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=5188bp|location=Sequence derived from alignment at C-tenellus_contig9778:554..5741+ (Choristocarpus tenellus KU2346)
CAGGATGGTGTGGAGGTCGTCATGCAGGCAGAGAACAATGAAATATCACG GCAGCTCCGCTCTCTTCTCAGCAAGTCAAATGACATGACCAGGACATTGC TTAGGATAAAGAAAGTAAGACCAGCCTTATACTGTAGTATTTGGAAGGAC CACAGTAAGGTTACAAATGTGAAGAACAATATTTTGCATCCAGGCACTAG TTCTGTTCAGAGTCCGTGTTTACGATATCCATTGCCCTTCATTGATACCA GGTTTTGTCCGATCGTCACAACAAGTACAATTTAATTTAGCAACTCAAAG TATGTTAGAGGGTAGAGCCACCTCCGTTTGGGAACCAAAATCCAATACTG AGATTTTGATGTAATTTTGGCTATCGTGTCTGTTAGAAAATTTCAATATC CTTGTTCCGGACACACCTTTTCATAACATACACATTGTACCTACTCCGAA ACATTTCGGAGTACGAAAATGTCATAAAAAAAACGTGGGAAGCCAAACCC CAAACGGGCAAACAGGACAAAACTCGTACCCTCTAAGACACTTTCACTCT GACACCACTGATGACCCGCACACAATGCAGGTATCAGCCAATCACGTGGA TTGGTGCAGGCTGCTCCAAGCTCTAGAGTCCACCTTGGCCATCCAGGACG TGCTTCATATCCTTCAACGGAGGGTGGAGGCGCCTGCCCATGCCTCTTTT CTGCAGCATCTTGTTGGTAAGGTGATATAGCTCTACTCTAGGGTGAGGAA GATTTATGTGTAGTTACTCAACAATATAATACCTGAGTATGTGCATGCAG TAGTACATCCATTGAAGGATACAATTTATAGATTGCACTACTCACAAATG CCCTCAGCACAAAGGGCACATATTTATTGCAGTATCTTTATTTCCAATGC AGAAGTTTATCTCAACCTACTTTGGACACTTTGTAATAAGGTTGGACTGT ACCTTCTCATTGATAGGACAATGATCTTCACAGATTGCTGGCGTTAACAA CAATCCTCTACCATACACGTTGCGCTTGATGTTACTTTAAACTTTGGTTT ATTAAATTGAAAATACCCTTTGTCCCTACAGAACGTGTGGATGGCCCTTC CCTCAGACATTGCCTGGATGACGTTTCAACCGTTATAGACCAGGCCGCCA CTGTCGAGGAGAAGGACATGGTGGTGAGGAAAGGGGTGGAGAGGGTGGAG TAAGACTTTCATGCATTTACTTTTCGAGTAATAATATAAAAATGTTGTCA GCGTTTCTCTGCTCTTCAGAGCCCCCTGTGAAAGGGAGGCTTGCTATGTA GAGACATGGTAATGCTCTGCGGAAAAATATGGAAATCACAAGAATAATAA CATTATTATCATTATCGATAGTTATCCACCCCTAAATGTTAATCCCCTGC CAGAATAAATGAACTGATTCACAACTACCGTTACTATCTGTTTTTTCTCT GACAGACACCAACTAGACCTCCAAGACAATAGCAAAAAGACTCGATCGTG ATGATAGGAAGTATTGGATGGAATGTAATGGCACAAAACACTGTGCTGCG CTATGTACTTCTTGCGCTAACTCTCATCTAACACAAGAGACTCCGTGGAA GAAGGGAATCTCCCAAGAACCACTACATATATGGAACTCTGTCCTGAAAC TTCAAAATAGATCATCTTCTACAGAGTGAAATCCTGCAAGTCGACACTTT CGATAGATGACATCACAATACAAACATATATCCAATGTGGAACCAGGGTA CGTGGGATAACTATATCTCCTCCTGTAATAAATATTTCATCTTCTCTCTC GTCCATGTGAAAATATTTCAATCAGTATTCCAACCTATTTTCTTTGCCCT GCTCACACTATTAAAGTAACACAATGACTATTGTCCAGTTCCTTTCTGGT TGCCTGCAATATTTGCGATTATTACCACTGGAAGTTTGGGGATGGCATAT TAATTTTTTTCTCTGGTGGATGATTGAACACTTTGTCGGACCAATTGACT ACTACAAATATAATTCCTGTTCCTACTTCACACCATAAAAACTCGCAGTA CTCGCCCCACAATGTTGCAGTTCAGACGTCTCTTTGTTAGACCTTTCGCG ATTTGCCAAAATACACTTCGACGGTCGCTCCAATAAGGTACGGGGCAACC CACTCGTGTTTCCCTTTTCATATTACTTATTGTTTTGATCAAATTAAGAT AGTATTGTATTCCAAACAAGTATGATGGTGATAATTGCATCCAGCAGAAT ACACCCCCAGCTCTAAGCATTTCGGAATTCTAAGACCAATAATGAATATA CCTGTTCCCCTACCTAACACCGCCCAATGCCCTATTCCTTCCCTTAACTC CTTTTACTTACCCTGGTCTGTTTAGATTCGAACAGGTTACTGTCCTAAGC TAGACCAACTGAAGCAAACGTTGGCCGATCTGGGCGAGCTTCTTCGGACA GTGGGTCAGGTGACATCATGCACCTCTATGAACAACATTACTTATAAACA CCCCCCCACCATCATGCAGTTTAATGTAGTATCTTCCGAAGGAATCTTTT CAAGTGTTCCTTCTAAGACACATGTGTTTTGGGTCTATTGAGTTCCTAAT TGATAAAGTGTATTGCGTACAATTATGCAGTTCAAGTCAGTTCTTGATAG TATAACTCAGGACATTCTTGACACGAATTGATGTGAGAATCATATACCTC TTGTAGGATGTCTTTGAACCATCAACCTAGATTACTCATCACTACTTTTA TTTAACAGTTATTACGACATTATGAGTGTAAATTTTCCTGCACAATATTG AGTAACTGCACGAATATCTAAACTCAAAGGTATTTTTCATTTCCATTTGG ATAACTTGGAGGTTATGAGACAATTCCTGATGAAAAAGACCCATCAGTAT CATACTCTTTTTGATACAAGAGAACGGACTTCTGTGATTGCAACCAGGTG GTACTGAGTGACAATCCTCTCCTAGAGGAGCTCAGTGTGGAATATGTGCC TCAGATAGGCTTTCTCACTGCACTCACAAGTGCATCTGAAGATTTGGTAC CCCAGGACTTCACATTCGCCTTTGCACAGGTAACTAATGTCCCGTGCACT CTCACTTCCTCCTTTCACTGATCCATTTCCCATACATCTCTTCTTAACCA ATTATCTTCCATCCTCCAGTCTCATCCGCTAACCCCTGACACATTCCCTT CTTCCCAGTTTTCCTTTCCCTCTTCCCTCTAAATCTCCAAGTTGCACAAA TCCCTTCTCTTCATCTCAAGCCCTATGACCTTGAATCATATACCTAGTTC TGTAACCTGCCATGCTGGTGTTATTGTTCATACAATGAGAAACAAACCAC TTTAACCGTGCCATTGTACTAGCGTGAATAATTAGATACGTGTTATACTA CGTGTTAGAGTATTTTTAAGTTTTACTCCAGATTATACGAGATGCTTGGT CACTCCATTCATCATTGAAAATATATATAGAAGGCTGGAGGAGCTTAGAT TAAATTGAGTGATATTGTGGTATTAAATATTCAGTAGCAACATTCTTTGT AGCATGAAGAAGGGCAGAAAAAAAATCTGCAGGTGCAACAAGACAAAGAT GAGATTTTCGTACGGTACAGATGTGGCAACAACGGGTGAATGGATGCAAA GGGTATTTGTATCAGTGGAGTATTGTTTTAATTTCCTTCCCATCTCTTCT ATTTGGGTTTCTGAAATCGGTGTACTTGAGGAGCAAGACAAGAGTATACT TTAAAGTGTGTTGTAGTATGAAAAATCAAACGCGCCTGCAAAAATACTCC AGCGTTCAACACCTCCCTACCCTCCTCCAATCCTCATTTCCCTTAGAGTC AACGTAACTTGGAGAGTAGAGCCAAGTCCGTCTGGGGGCCAAAATCCAAT GTTGTGATTTTGTTGTAATTTTGCCTATCATGTTTGTTTGGAAGTGTCAA TATCCTTGTTCCGGACACACCTTTTCATGACGTGAATGTTTTATCTACTC CGAAACATTTCGGAGTAGGAAAATGTCATTAAAAAAACGTGGGAAGCCAA GCCCCAAACGGACAAACAGGGCAAAACTCGTACCCTCTAATATACTTCCA CTCTTACACATGAATATTCTGTAACAAGTCATTCATTTTTGTCCCCTCCT TGCACTATGTTACCTCCTCCCATCAATCCTATCCCACTGATCCCTCTCGA CCCACAACACTCCTAAGCCACTTTCACAATATTTTCCACTCTCCCTTCAC ATCCTAGGGGGATGTAGTCTACTACAAGAACACTCACATGCTAGAACTGG ACGACGAGATAGGTGATATTCAGGCGCAGATCGCGGACCTACAGGTGACG ATGACTTTGAGGAGTACACATCATTGCTGTTAAAAAAAAGTGTTCCAGAG CACAAGATATTGAGAACTCTATAGCGTTTCAAATAAACTTTAATTGAACA AGGTGTTTATGAGATTATTAGGATCCACAGTGATATCCTTCTGTTTACAT CAACTCCACCATGCACCATGATGTAACCATAAAAGTTGTAAGCGATGCAA AACCTCCCTTCTGATATAATCCCAAACTCCTCAAAAAATTTCCAACAAAA AGGCATCACTGATTCGCCACCTAGAAGAGACTGTCCTTGAAAGGGAGGGA GCCCTTCACCATGCAGCGGCAGCAATGGGGGAGCTTGATGCTACTTTGGC ATTGGCTTCAGTTGCCACGGATTTTGGGTTTGTGAGGCCTCAGGTACTAT ACATGCTGGTTGCTAGAGGGTGTGAAGGCAGGATGTTGACATTTTTAATT TTAAGGACAGGGTGATAGCATGTTTTTTACTCAGTTTGAAAAAATGGTCT CCATATGGATTCAAGTAGATATCTTGCACTATGTCCTCTCCAACCTCCCA ATATTAGCACTGGCTGTTAGGGGGCTGGAAAGCAGAGTACTGAGAACAAT ACAAGGAGTAGTAGTAAGCTTATAATATATTTTGTACATTATTCCTATAC AACAAGTGTGATAAATCATCTCAAACAAAATAAATAATACGTATTTCGCA ATGCAAATTGCAATCTAACCTACTCTCATGTGCACACTCAATTGTGGATG GAATACCTGTATGTCTTGGTTCACAATATTTTTCCAGGTCGTGGAGCAGA ACGTAATTGTGATCAAGAACGGCCGTCACCCATTGCAG
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Coding sequence (CDS) from alignment at C-tenellus_contig9778:554..5741+

>mRNA_C-tenellus_contig9778.1.1 ID=mRNA_C-tenellus_contig9778.1.1|Name=mRNA_C-tenellus_contig9778.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=816bp|location=Sequence derived from alignment at C-tenellus_contig9778:554..5741+ (Choristocarpus tenellus KU2346)
ATGCAGGCAGAGAACAATGAAATATCACGGCAGCTCCGCTCTCTTCTCAG
CAAGTCAAATGACATGACCAGGACATTGCTTAGGATAAAGAAAGTATCAG
CCAATCACGTGGATTGGTGCAGGCTGCTCCAAGCTCTAGAGTCCACCTTG
GCCATCCAGGACGTGCTTCATATCCTTCAACGGAGGGTGGAGGCGCCTGC
CCATGCCTCTTTTCTGCAGCATCTTGTTGAACGTGTGGATGGCCCTTCCC
TCAGACATTGCCTGGATGACGTTTCAACCGTTATAGACCAGGCCGCCACT
GTCGAGGAGAAGGACATGGTGATTCGAACAGGTTACTGTCCTAAGCTAGA
CCAACTGAAGCAAACGTTGGCCGATCTGGGCGAGCTTCTTCGGACAGTGG
GTCAGGTGGTACTGAGTGACAATCCTCTCCTAGAGGAGCTCAGTGTGGAA
TATGTGCCTCAGATAGGCTTTCTCACTGCACTCACAAGTGCATCTGAAGA
TTTGGTACCCCAGGACTTCACATTCGCCTTTGCACAGGGGGATGTAGTCT
ACTACAAGAACACTCACATGCTAGAACTGGACGACGAGATAGGTGATATT
CAGGCGCAGATCGCGGACCTACAGGCATCACTGATTCGCCACCTAGAAGA
GACTGTCCTTGAAAGGGAGGGAGCCCTTCACCATGCAGCGGCAGCAATGG
GGGAGCTTGATGCTACTTTGGCATTGGCTTCAGTTGCCACGGATTTTGGG
TTTGTGAGGCCTCAGGTCGTGGAGCAGAACGTAATTGTGATCAAGAACGG
CCGTCACCCATTGCAG
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