mRNA_C-tenellus_contig9570.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9570.1.1
Unique NamemRNA_C-tenellus_contig9570.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
[Close]
BLAST of mRNA_C-tenellus_contig9570.1.1 vs. uniprot
Match: D8LAS9_ECTSI (Sphingosine kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAS9_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 2.410e-20
Identity = 55/118 (46.61%), Postives = 76/118 (64.41%), Query Frame = 2 
Query: 1499 TFTEGEEVHTSFFLFFSLQVKYMSHDMPIAPASWLGDRSMYLLTVKKGASKWKMLQLLMDMEKGKHLR-HVDVVQCHCVRAFRLEPLTNRGRTSLDGEEIDNGPVQQHVWRHASKVMC 1849
            T  EGE     F L    Q  +++HDMP+AP S +GD  + L  +KKGAS++ M+Q+ + MEKG H+      +  H VRAFR+EPLT+ GR ++DGE +D  P+QQHVWR A+ V C
Sbjct:  479 TSVEGE-----FILADMTQASHIAHDMPMAPHSRIGDGLIDLFFIKKGASRFAMIQMFLAMEKGGHISPRFPCISWHRVRAFRIEPLTSSGRITVDGELVDYAPLQQHVWRKAAHVFC 591
[Close]
BLAST of mRNA_C-tenellus_contig9570.1.1 vs. uniprot
Match: UPI00034B5F38 (hypothetical protein n=1 Tax=Pleurocapsa sp. PCC 7319 TaxID=118161 RepID=UPI00034B5F38)

HSP 1 Score: 73.9 bits (180), Expect = 5.140e-10
Identity = 40/110 (36.36%), Postives = 65/110 (59.09%), Query Frame = 2 
Query: 1520 VHTSFFLFFSLQVKYMSHDMPIAPASWLGDRSMYLLTVKKGASKWKMLQLLMDMEKGKHLRHVDVVQCHCVRAFRLEPLTNRGRTSLDGEEIDNGPVQQHVWRHASKVMC 1849
            +   F   +++   + +HDM + P + L D +M +L +++G S+ ++L+ LM   KG+HL  +  ++ + VRAFRLEPLTN+G   +DGE ID  PV   V    + V C
Sbjct:  333 IEDEFIFLWAMNTSWAAHDMNVTPHAQLNDGAMDVLIMRRGTSRIELLKALMRCGKGQHLS-LPHMEYYKVRAFRLEPLTNKGILVIDGELIDYSPVAIKVIPDLACVNC 441
[Close]
BLAST of mRNA_C-tenellus_contig9570.1.1 vs. uniprot
Match: A0A8J1U522_OWEFU (Ofus.G1060 protein (Fragment) n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1U522_OWEFU)

HSP 1 Score: 72.0 bits (175), Expect = 9.700e-10
Identity = 36/97 (37.11%), Postives = 60/97 (61.86%), Query Frame = 2 
Query: 1562 YMSHDMPIAPASWLGDRSMYLLTVKKGASKWKMLQLLMDMEKGKHLRHVDVVQCHCVRAFRLEPLTNRGRTSLDGEEIDNGPVQQHVWRHASKVMCM 1852
            ++S D+  AP   L D  ++++ ++ G S+  +LQL +D++ G H      ++   V+AFRLEPL+  G  ++DGEEI+ GPVQ  VW  A+ +M +
Sbjct:  229 HLSSDIFAAPDCKLQDGCIHVIFLRAGVSRRVVLQLFLDLQDGTHTDS-HFIESVIVKAFRLEPLSPPGHVTIDGEEIEYGPVQGQVWPSAATIMAI 324
[Close]
BLAST of mRNA_C-tenellus_contig9570.1.1 vs. uniprot
Match: T1JKM2_STRMM (DAGKc domain-containing protein n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1JKM2_STRMM)

HSP 1 Score: 71.2 bits (173), Expect = 3.350e-9
Identity = 37/106 (34.91%), Postives = 64/106 (60.38%), Query Frame = 2 
Query: 1529 SFFLFFSLQVKYMSHDMPIAPASWLGDRSMYLLTVKKGASKWKMLQLLMDMEKGKHLRHVDVVQCHCVRAFRLEPLTNRGRTSLDGEEIDNGPVQQHVWRHASKVM 1846
            SF L + +   ++  ++  AP++ L D  M+LLTV+KG S+ ++L  ++ +E G+H R    V    VRA R+EP T+ G  ++DGE ++ GP+Q  V    +++M
Sbjct:  262 SFLLVYVVYQTHIGSEVFFAPSARLDDGIMWLLTVRKGVSRKQLLSFMLSLESGEHTR-CPFVGMIPVRAVRIEPFTDSGHMTVDGENVECGPMQAEVLPSLARIM 366
[Close]
BLAST of mRNA_C-tenellus_contig9570.1.1 vs. uniprot
Match: A0A6L5CCV6_9INSE (DAGKc domain-containing protein n=1 Tax=Ephemera danica TaxID=1049336 RepID=A0A6L5CCV6_9INSE)

HSP 1 Score: 70.9 bits (172), Expect = 4.120e-9
Identity = 52/156 (33.33%), Postives = 83/156 (53.21%), Query Frame = 2 
Query: 1397 VGLPAPLHYEEPAGLFPSVSHLCV*NSLPRELFKTFTEGE--EVHTSFFLFFSLQVKYMSHDMPIAPASWLGDRSMYLLTVKKGASKWKMLQLLMDMEKGKHLRHVDVVQCHCVRAFRLEPL-TNR---GRTSLDGEEIDNGPVQQHVWRHASKVM 1846
            V  P  L YEE A ++   S L        E + T  EG+   VH ++         ++S+D  IAP + L D  ++L+ V+ G S+ ++LQ L+ +  G H+ H+ +V+   V AFRLEP  TN+   G  ++DGEE+D GP+Q  +     K++
Sbjct:  256 VTAPEELPYEEQACMYGPPSKLPALTQPVPEHWTTI-EGDFVMVHANY-------QTHISYDCYIAPDARLDDGVIWLIVVRAGVSRAQLLQFLLGLSSGTHI-HMPMVELLPVTAFRLEPFDTNKKGNGHITVDGEEVDYGPIQAEIMPGLGKIV 402
[Close]
BLAST of mRNA_C-tenellus_contig9570.1.1 vs. uniprot
Match: UPI001879D9AF (sphingosine kinase 2 isoform X1 n=8 Tax=Manis TaxID=9973 RepID=UPI001879D9AF)

HSP 1 Score: 70.9 bits (172), Expect = 8.090e-9
Identity = 41/117 (35.04%), Postives = 65/117 (55.56%), Query Frame = 2 
Query: 1532 FFLFFSLQVKYMSHDMPIAPASWLGDRSMYLLTVKKGASKWKMLQLLMDMEKGKHLRHVDVVQCH--CVRAFRLEPLTNRGRTSLDGEEIDNGPVQQHVWRHASKVMCMAPSKPQQE 1876
            F L  ++   ++  D+  AP +   D  ++L  V+ G S+  +L+L + ME G HL  +D  Q      RAFRLEPLT+RG  ++DGE+++ GP+Q  V      ++   P +P QE
Sbjct:  558 FVLILAISPSHLGADLVAAPHARFDDGLVHLCWVRGGISRAALLRLFLAMEHGSHLS-LDCPQLGYTAARAFRLEPLTSRGVLTVDGEQVEYGPLQAQVHPGLGTLLTGPPGRPGQE 673
[Close]
BLAST of mRNA_C-tenellus_contig9570.1.1 vs. uniprot
Match: UPI001BF8CDD3 (sphingosine kinase 1-like isoform X1 n=3 Tax=Alosa TaxID=34772 RepID=UPI001BF8CDD3)

HSP 1 Score: 70.1 bits (170), Expect = 1.260e-8
Identity = 35/108 (32.41%), Postives = 63/108 (58.33%), Query Frame = 2 
Query: 1526 TSFFLFFSLQVKYMSHDMPIAPASWLGDRSMYLLTVKKGASKWKMLQLLMDMEKGKHLR-HVDVVQCHCVRAFRLEPLTNRGRTSLDGEEIDNGPVQQHVWRHASKVM 1846
            T F L  ++   Y++ D+  AP +   D  ++L  V +G S+  +L+L + MEKG H+      +  H VRA RLEPL+ +G  ++DGE+++ GP+Q  +    ++++
Sbjct:  481 TGFILMLAMYQSYLAEDLQAAPEARTQDGCIHLYYVLEGVSRAALLRLFLAMEKGTHMACECPQLVYHQVRALRLEPLSTQGALTVDGEQVECGPIQAQIHGSVARLI 588
[Close]
BLAST of mRNA_C-tenellus_contig9570.1.1 vs. uniprot
Match: A0A8D0B5C4_9SAUR (Sphingosine kinase 2 n=1 Tax=Salvator merianae TaxID=96440 RepID=A0A8D0B5C4_9SAUR)

HSP 1 Score: 70.1 bits (170), Expect = 1.280e-8
Identity = 35/106 (33.02%), Postives = 61/106 (57.55%), Query Frame = 2 
Query: 1532 FFLFFSLQVKYMSHDMPIAPASWLGDRSMYLLTVKKGASKWKMLQLLMDMEKGKHLRHVDVVQCHC-VRAFRLEPLTNRGRTSLDGEEIDNGPVQQHVWRHASKVM 1846
            F L  ++   ++  D+   P +   D  ++L  VK G S+  +++L + MEKG H +H      +  VRAFR+EPLT +G  ++DGE ++ GP+Q  + R A+ ++
Sbjct:  485 FVLVLAIYQTHLGADLFTVPFACFNDGLIHLCYVKAGISRASLMRLFLSMEKGTHFQHESPYFTYIPVRAFRIEPLTQKGIITIDGERVEYGPIQGQIHRGAANLV 590
[Close]
BLAST of mRNA_C-tenellus_contig9570.1.1 vs. uniprot
Match: A0A6J0U3R3_9SAUR (sphingosine kinase 2 n=1 Tax=Pogona vitticeps TaxID=103695 RepID=A0A6J0U3R3_9SAUR)

HSP 1 Score: 70.1 bits (170), Expect = 1.280e-8
Identity = 36/102 (35.29%), Postives = 58/102 (56.86%), Query Frame = 2 
Query: 1520 VHTSFFLFFSLQVKYMSHDMPIAPASWLGDRSMYLLTVKKGASKWKMLQLLMDMEKGKHLRHV-DVVQCHCVRAFRLEPLTNRGRTSLDGEEIDNGPVQQHV 1822
            V   F L  ++   ++  D+  AP ++  D  ++L  VK G S+  +++L + MEKG H       V C  VRAFR+EPLT +G  ++DGE ++ GP+Q  +
Sbjct:  482 VEDDFVLVLAIYQTHLGADLYTAPFAYFNDGLIHLAYVKAGISRAALIRLFLAMEKGTHFEQACPHVTCIPVRAFRIEPLTQKGIITVDGERVEYGPIQGQI 583
[Close]
BLAST of mRNA_C-tenellus_contig9570.1.1 vs. uniprot
Match: B4LEC0_DROVI (DAGKc domain-containing protein n=2 Tax=virilis group TaxID=32335 RepID=B4LEC0_DROVI)

HSP 1 Score: 70.1 bits (170), Expect = 1.360e-8
Identity = 50/154 (32.47%), Postives = 75/154 (48.70%), Query Frame = 2 
Query: 1400 GLPAPLHYEEPAGLFPSVSHLCV*NSLPRELFKTFTEGEEVHTSFFLFFSLQVKYMSH---DMPIAPASWLGDRSMYLLTVKKGASKWKMLQLLMDMEKGKHL--RHVDVVQCHCVRAFRLEPLTNRGRTSLDGEEIDNGPVQQHVWRHASKVM 1846
            GL    H   P+ + PS++       LP        EGE        F  +   Y SH   D   AP + L D  ++L+ ++ G S+  +L  L +M  G HL  ++ + V+   VRAFRLEP  N G  ++DGE+I+ GP+Q  +    S+VM
Sbjct:  505 GLEQNQHNFGPSSILPSLNE-----PLPEAAGWLVEEGE--------FIMMHAVYQSHLGVDCHFAPKAQLNDGKIFLVLIRGGISRPHLLSFLYNMSTGTHLPEKNNEYVKVLQVRAFRLEPHDNHGIITVDGEQIEFGPLQAEILPGISRVM 645
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9570.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LAS9_ECTSI2.410e-2046.61Sphingosine kinase n=1 Tax=Ectocarpus siliculosus ... [more]
UPI00034B5F385.140e-1036.36hypothetical protein n=1 Tax=Pleurocapsa sp. PCC 7... [more]
A0A8J1U522_OWEFU9.700e-1037.11Ofus.G1060 protein (Fragment) n=1 Tax=Owenia fusif... [more]
T1JKM2_STRMM3.350e-934.91DAGKc domain-containing protein n=1 Tax=Strigamia ... [more]
A0A6L5CCV6_9INSE4.120e-933.33DAGKc domain-containing protein n=1 Tax=Ephemera d... [more]
UPI001879D9AF8.090e-935.04sphingosine kinase 2 isoform X1 n=8 Tax=Manis TaxI... [more]
UPI001BF8CDD31.260e-832.41sphingosine kinase 1-like isoform X1 n=3 Tax=Alosa... [more]
A0A8D0B5C4_9SAUR1.280e-833.02Sphingosine kinase 2 n=1 Tax=Salvator merianae Tax... [more]
A0A6J0U3R3_9SAUR1.280e-835.29sphingosine kinase 2 n=1 Tax=Pogona vitticeps TaxI... [more]
B4LEC0_DROVI1.360e-832.47DAGKc domain-containing protein n=2 Tax=virilis gr... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9570contigC-tenellus_contig9570:2148..5828 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LAS9
PFAMsDAGK_cat
Model size2681
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00017
KEGG koko:K04718,ko:K11502
KEGG ReactionR01926,R02976
KEGG Pathwayko00600,ko01100,ko04020,ko04071,ko04072,ko04370,ko04371,ko04666,ko05152,map00600,map01100,map04020,map04071,map04072,map04370,map04371,map04666,map05152
KEGG ModuleM00100
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.11e-24
EggNOG OGsCOG1597@1|root,KOG1116@2759|Eukaryota
Ec32 ortholog descriptionSphingosine kinase
Ec32 orthologEc-27_006490.1
EC2.7.1.91
DescriptionD-erythro-sphingosine kinase activity
Cds size336
COG categoryI
BiGG ReactioniRC1080.CRv4_Au5_s12_g3675_t1
BRITEko00000,ko00001,ko00002,ko01000,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790185.6059253-UTR-C-tenellus_contig9570:2147..29281680790185.6059253-UTR-C-tenellus_contig9570:2147..2928Choristocarpus tenellus KU2346UTRC-tenellus_contig9570 2148..2928 -
1680790185.6387613-UTR-C-tenellus_contig9570:4264..58281680790185.6387613-UTR-C-tenellus_contig9570:4264..5828Choristocarpus tenellus KU2346UTRC-tenellus_contig9570 4265..5828 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790185.6173637-CDS-C-tenellus_contig9570:2928..31621680790185.6173637-CDS-C-tenellus_contig9570:2928..3162Choristocarpus tenellus KU2346CDSC-tenellus_contig9570 2929..3162 -
1680790185.6283762-CDS-C-tenellus_contig9570:4162..42641680790185.6283762-CDS-C-tenellus_contig9570:4162..4264Choristocarpus tenellus KU2346CDSC-tenellus_contig9570 4163..4264 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9570.1.1prot_C-tenellus_contig9570.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9570 2929..4264 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9570.1.1

>prot_C-tenellus_contig9570.1.1 ID=prot_C-tenellus_contig9570.1.1|Name=mRNA_C-tenellus_contig9570.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=112bp
MSHDMPIAPASWLGDRSMYLLTVKKGASKWKMLQLLMDMEKGKHLRHVDV
VQCHCVRAFRLEPLTNRGRTSLDGEEIDNGPVQQHVWRHASKVMCMAPSK
PQQEQQYAMGL*
back to top

mRNA from alignment at C-tenellus_contig9570:2148..5828-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9570.1.1 ID=mRNA_C-tenellus_contig9570.1.1|Name=mRNA_C-tenellus_contig9570.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3681bp|location=Sequence derived from alignment at C-tenellus_contig9570:2148..5828- (Choristocarpus tenellus KU2346)
GGGAGAGCTTGCTCGGAGGTTGTCTTGGTCTCACCCTCCTCGTCCTGTGC
CCCTGGTTCTCAGCCCTCTTATTAAATACTGAAGACTCCTCTTCACCTTC
CCTCTTCCTACCACTCATTTATTTTTACCTTTTTCCCCTTAGCCAGTCAT
TCCTTAACTATTCTTTCTCTTCCTGCTTCCTTCTTTTTCTTTACACTACC
TTCCCTTGTCCTCTGCCCCCAGCCAGCCAGAATTCTTCCGCCCACAAGAC
TCAAGAGATTACTTCATAAACTTTCACATTTGTACACAGCGAAAGAGAAT
TTATTCCTCTGAATCAGTTCCCTTGATTTAAAAAAATACGAATCCAACAC
TCAAGTATTTTCTTTTTGAAATATTCAAACTATTCAAATATTTGAAGATA
CACTTGGATCTCTCTTCTTTTTTTTTCCTCATTTCAAGATATTTTTGTAC
TTCGTCAGACTGAGAAAAGGTACATACATACAATACTCACTATACTACTA
TCATATTTTTATTATCATGCCCTCTGATATTTTCTATCATATTTTTATTA
TCATGCCCTCTGATATTTTCCAGATGTTTCCGCGGGGGGAAACCAATGAA
AACTATTCCTAACCCTAACCCTAATTCACATGTCAGTATAAGAGCCCTAA
AGAAAGAAAATGTCACAAATGTGAAGCACACTAATCTATCGTTTGATTAT
TTTTGTTATTTAGCTAATTAAAAAAAAGGGGGTGTGCAGGGCATGGAACA
AACGTGAGAGGTTTGGAAAGTAAAAACATGGTAGAATTTTACTGGAAAGT
GCGTGGCAGACGCTCGAGGTATACACATGCGCAGGAAAAAGGTAACTTTA
AAAGTTTAACTTGGTTGGGTTTATATGCAAATTGTTATTATTGGACTGAT
AGAATAGTTTAGTCGTCGACTGATGTCATTAACTCCTACTTGACAGCACT
AATCAATGCCTTGCTACATACTACTAATACTACGTAAGAGATACATACTT
CCTCTGCTCAGAATCACAGTATTGGACAGTGTAGATGGAGTAGGTAGACT
CGAGTTGGATTTCGTGATATTTTTTTAGGGTTCATCTCGTAAACGAGTTC
TTGCAAGACCCCCACCGTAGGAAGCAATGAAAATCTGATATTTATCCTAT
CTTGTGTGAGAGTCATCTTCCACAGAAGGTACACCCTGAAAGTAACCTAC
CTTGAAGATTCTGATATTCATATGAAATTTGTTTTTGCATGTTGAAGGTA
ACATCTGCTTGAAGTAAGATCGGGTGGTTTGGAGTGACCTTGCCAACCCC
CCCCTCATTGCGCTACCACTGGATCACTCCTTTACCGAGTGATCTTCTGA
GGGATTGCTCTCCCTCTTGACTTGTCTCTCTTTGAACTTGCCTCCCGTGG
GTCTTCCCGCTCCCCTTCATTACGAAGAACCTGCCGGCCTGTTTCCATCT
GTTTCACACTTGTGCGTGTAGAATAGTCTGCCCCGCGAACTGTTCAAGAC
TTTCACTGAAGGAGAGGAAGTGCATACTTCATTTTTTTTGTTTTTTTCTT
TACAGGTGAAGTACATGTCGCATGATATGCCGATTGCCCCAGCCTCGTGG
CTTGGCGACAGATCCATGTACCTCCTGACAGTGAAGAAAGGGGCTAGCAA
GTGGAAGATGCTGCAGGTGACATTTGTTGTTTTGGTATCACATAAATTGA
TAGTTTGGTGTTCTACCGTTGATGGTATGGGCCGTGCATACCATCAACAT
GTGTGTTGTCCCCTCTGGTGAAGTCTGTTTAGGGAACTTTAGGAGTGTAA
TTTGATCCCTCTGCTGCCACTTGATTTAATTAGTGCTGACGTTCACTTAT
ACATGTTTCTATTTTCCCTGCACACTCTTTCGAAGGCTGTATGTGGACAG
ACGTGGAAGTGGAGAGAGCACGAATTTGTCAGCCCTGTTGCGAGCCTTGT
TTGGTTTCAGTTTGGTCTCTCACACAAGACGGTTTGTTGATGGAATGAAG
TGCTGAGAGGATGCACAGTCATTCGACGGTTCTGTGAAGTGTCCCATCAA
CCACCAAACACTGTGGGGAGGGGGGGTTGCATGGTAGAAATATCTAAGTG
CTCAACACTGGCTGCTGCCAACTCCCCTTCGATTTTTAAACTTGTTGCGT
TCTCCATAATATACAATTGTAGCTATATGAAATGTAGTTAGTACCTGCTG
TTAAATACATTTCTTGTAAGGATGTGGAGTATAGACTTATCTTGTGGTAC
TACTACACAGTATTTACAATGAAGGTATACCTTTTTTATACTCACACACA
CACCATGCAGTGCACTATAGATAAGAAGTACAAACGTATGCTGCACTGCA
ATATGTTTTAAGGCTGATTTTAGTTCTCAATCCTGGACAAGCAGGAGACA
AGCGTTCGTGAATAGGTGTGCCATGTGTACAAGTTGTAGATGATATTTCA
AAAGTGTAGATGATACCACAATGAAGTGTGAAAACTCACTACTTTATAGC
CAGAATGTGCTAGTTAAGCCTTCAGCTGCATGAACCGATGCATCCATCAC
CACCAACAATTTCCACTAGTTACACTAATTTCACTGCCCCAACCGTTTTA
CTTTTGTCTGTTTTTCCTCGCTCGCTCACACAACTTGTAAACGCGCACAT
CATGCGCACTTCACAGCTACTTATGGACATGGAAAAAGGCAAACACCTGC
GGCATGTTGACGTTGTACAGTGCCACTGCGTCCGGGCCTTTCGCCTTGAA
CCGCTTACAAATCGGGGGAGGACCAGCCTTGACGGGGAGGAGATAGATAA
CGGTCCCGTGCAGCAGCATGTTTGGCGCCATGCCAGTAAGGTCATGTGCA
TGGCACCGTCAAAGCCACAACAAGAACAACAATACGCCATGGGGCTGTGA
TGAGTGTAACTGCTTGGGGGTGGATCTTTGCAGCAAGCCAAAGCTGCATG
CATCGTAGAGAACTGCTGCTGTGAAGAATATGCAGGCATCTATGTGTCTT
GTGCTTGGGAATGTATGTGTATCTGTTTGGTTATGTACGTATCCAAGCGC
ACCTTTTTTGTATTGGTAGGCCAGCAGTGATACCTACTTGTTGATAATAT
TTGAGCTGATCACTTTCCAGGCCACTGTTTCTCTCTCAAGTGTCCCTGAG
TTTGTTATGAAGGAGTGTTGTCCTTGTGGTTGTTTGTTTTATATGTGTGG
CGCATTCTCGGTAATTTTTTACAGTTCCTTTGCTGTACGCAAAAGGTGGA
TGTGCTACGCAGGTGCTTACCTTGCCTTAGAAGTAAAGAGCACATCATAC
ACTCTTCGGCAAGGATTTCAGCATAGAGTGGGGTCCCCTTGCTCACTGCA
AATGGAATCTTTACCTCTCTAGCCAGCAAATGTTTGATGATGTAAGACTG
TTTGAAATGCCTAAATCATTCTGTATTGGAGGTAGTTGTAGCCGTTACTA
GAAGCGAAGGTGTGTTGGAGTTGTTACCGTTGCCAGACATCTCCCCCCTG
CCCTTGCCCCCGCCTACTTCCCTACTTATCTGTAGTAAAAACATTGACAA
ACAGTAGTGAGCAATTTGTGCTATTGACTCGATTGTGTTTTATGTATATA
TATTAGTGAATGGTAATGAACAGCGACAATGATAGCTGTTGGTACCATAC
TGTGTCGTGAGGAGGGGAGTGCTTTGTGTTA
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig9570:2148..5828-

>mRNA_C-tenellus_contig9570.1.1 ID=mRNA_C-tenellus_contig9570.1.1|Name=mRNA_C-tenellus_contig9570.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=336bp|location=Sequence derived from alignment at C-tenellus_contig9570:2148..5828- (Choristocarpus tenellus KU2346)
ATGTCGCATGATATGCCGATTGCCCCAGCCTCGTGGCTTGGCGACAGATC
CATGTACCTCCTGACAGTGAAGAAAGGGGCTAGCAAGTGGAAGATGCTGC
AGCTACTTATGGACATGGAAAAAGGCAAACACCTGCGGCATGTTGACGTT
GTACAGTGCCACTGCGTCCGGGCCTTTCGCCTTGAACCGCTTACAAATCG
GGGGAGGACCAGCCTTGACGGGGAGGAGATAGATAACGGTCCCGTGCAGC
AGCATGTTTGGCGCCATGCCAGTAAGGTCATGTGCATGGCACCGTCAAAG
CCACAACAAGAACAACAATACGCCATGGGGCTGTGA
back to top