mRNA_C-tenellus_contig9380.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9380.2.1
Unique NamemRNA_C-tenellus_contig9380.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
[Close]
BLAST of mRNA_C-tenellus_contig9380.2.1 vs. uniprot
Match: D8LIA5_ECTSI (Probable carboxypeptidase Cxp n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIA5_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 2.090e-13
Identity = 38/67 (56.72%), Postives = 47/67 (70.15%), Query Frame = 1 
Query:  121 CVDKYERGMSVERLTEVFQELKAGLVPLLREIQEKVKEXXXXXXXXXXXXRYPSCLHSGDEWDVEEQ 321
            C+D++ERGMS ERL EVF ELKAGLVPLLR IQEKV +            R+P+ LHSG++W  +EQ
Sbjct:  268 CLDQFERGMSTERLREVFGELKAGLVPLLRAIQEKVAKEDKSGAAAE---RHPTPLHSGEQWGKDEQ 331
[Close]
BLAST of mRNA_C-tenellus_contig9380.2.1 vs. uniprot
Match: A0A7S1XPI5_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XPI5_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.160e-11
Identity = 36/66 (54.55%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:  124 VDKYERGMSVERLTEVFQELKAGLVPLLREIQEKVKEXXXXXXXXXXXXRYPSCLHSGDEWDVEEQ 321
            VDK+ERGMS ERL EVF ELKAGLVPLLR +Q    +              P+CL  GD WDVE+Q
Sbjct:  177 VDKFERGMSAERLDEVFSELKAGLVPLLRSVQAAAGDAPAT----------PACLEPGDAWDVEQQ 232
[Close]
BLAST of mRNA_C-tenellus_contig9380.2.1 vs. uniprot
Match: A0A7S0BFT7_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BFT7_9RHOD)

HSP 1 Score: 58.2 bits (139), Expect = 1.100e-7
Identity = 29/67 (43.28%), Postives = 37/67 (55.22%), Query Frame = 1 
Query:  121 CVDKYERGMSVERLTEVFQELKAGLVPLLREIQEKVKEXXXXXXXXXXXXRYPSCLHSGDEWDVEEQ 321
            C+D +ERGM+  RLTE+F ELKAGLVPLL +I+  +                PS L   D WD  +Q
Sbjct:   32 CIDLFERGMTSARLTEIFDELKAGLVPLLNDIRSALDSQP----------ELPSALKGSDAWDTAKQ 88
[Close]
BLAST of mRNA_C-tenellus_contig9380.2.1 vs. uniprot
Match: A0A7S3EEB4_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EEB4_9RHOD)

HSP 1 Score: 58.2 bits (139), Expect = 1.410e-7
Identity = 29/67 (43.28%), Postives = 40/67 (59.70%), Query Frame = 1 
Query:  121 CVDKYERGMSVERLTEVFQELKAGLVPLLREIQEKVKEXXXXXXXXXXXXRYPSCLHSGDEWDVEEQ 321
            C+D +ERGM+  RLTE+F ELKAGLVPLL EI+  ++               PS L   ++WD ++Q
Sbjct:  189 CIDLFERGMTSARLTEIFDELKAGLVPLLNEIRGALEAQP----------ELPSGLKGSEDWDTKKQ 245
[Close]
BLAST of mRNA_C-tenellus_contig9380.2.1 vs. uniprot
Match: A0A7S3EEB6_9RHOD (Hypothetical protein n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EEB6_9RHOD)

HSP 1 Score: 58.2 bits (139), Expect = 1.780e-7
Identity = 29/67 (43.28%), Postives = 40/67 (59.70%), Query Frame = 1 
Query:  121 CVDKYERGMSVERLTEVFQELKAGLVPLLREIQEKVKEXXXXXXXXXXXXRYPSCLHSGDEWDVEEQ 321
            C+D +ERGM+  RLTE+F ELKAGLVPLL EI+  ++               PS L   ++WD ++Q
Sbjct:  189 CIDLFERGMTSARLTEIFDELKAGLVPLLNEIRGALEAQP----------ELPSGLKGSEDWDTKKQ 245
[Close]
BLAST of mRNA_C-tenellus_contig9380.2.1 vs. uniprot
Match: R1E666_EMIHU (Uncharacterized protein n=4 Tax=Emiliania huxleyi TaxID=2903 RepID=R1E666_EMIHU)

HSP 1 Score: 55.1 bits (131), Expect = 2.130e-6
Identity = 34/78 (43.59%), Postives = 42/78 (53.85%), Query Frame = 1 
Query:   91 RPVLRWTPIR-CVDKYERGMSVERLTEVFQELKAGLVPLLREIQEKVKEXXXXXXXXXXXXRYPSCLHSGDEWDVEEQ 321
            RP L+  P    +D +ERGM  ERL E+F+EL+AGLVPLL  I  K                +PS L  GD+WD E Q
Sbjct:  160 RPALKSEPYDGALDAFERGMRAERLDEIFEELRAGLVPLLEAINAKKASDPSVDAP------HPS-LAFGDQWDTEAQ 230
[Close]
BLAST of mRNA_C-tenellus_contig9380.2.1 vs. uniprot
Match: A0A836CFE7_9STRA (Putative carboxypeptidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFE7_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 8.940e-5
Identity = 24/36 (66.67%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:  124 VDKYERGMSVERLTEVFQELKAGLVPLLREIQEKVK 231
            +D +ERGMS ERL EVF ELKAGL PLL  I +K+K
Sbjct:  213 IDVFERGMSRERLAEVFTELKAGLTPLLSAILDKIK 248
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9380.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LIA5_ECTSI2.090e-1356.72Probable carboxypeptidase Cxp n=1 Tax=Ectocarpus s... [more]
A0A7S1XPI5_9STRA1.160e-1154.55Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S0BFT7_9RHOD1.100e-743.28Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
A0A7S3EEB4_9RHOD1.410e-743.28Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S3EEB6_9RHOD1.780e-743.28Hypothetical protein n=3 Tax=Rhodosorus marinus Ta... [more]
R1E666_EMIHU2.130e-643.59Uncharacterized protein n=4 Tax=Emiliania huxleyi ... [more]
A0A836CFE7_9STRA8.940e-566.67Putative carboxypeptidase n=1 Tax=Tribonema minus ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9380contigC-tenellus_contig9380:576..2137 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LIA5
PFAMsPeptidase_M32
Model size348
Max annot lvl2759|Eukaryota
KEGG koko:K01299
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.11e-10
EggNOG OGsCOG2317@1|root,2QQRM@2759|Eukaryota
EC3.4.17.19
DescriptionCarboxypeptidase Taq (M32) metallopeptidase
Cds size204
COG categoryE
BRITEko00000,ko01000,ko01002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790173.6177676-CDS-C-tenellus_contig9380:575..7791680790173.6177676-CDS-C-tenellus_contig9380:575..779Choristocarpus tenellus KU2346CDSC-tenellus_contig9380 576..779 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790173.6309257-UTR-C-tenellus_contig9380:779..8641680790173.6309257-UTR-C-tenellus_contig9380:779..864Choristocarpus tenellus KU2346UTRC-tenellus_contig9380 780..864 -
1680790173.6395273-UTR-C-tenellus_contig9380:2078..21371680790173.6395273-UTR-C-tenellus_contig9380:2078..2137Choristocarpus tenellus KU2346UTRC-tenellus_contig9380 2079..2137 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9380.2.1prot_C-tenellus_contig9380.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9380 576..779 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9380.2.1

>prot_C-tenellus_contig9380.2.1 ID=prot_C-tenellus_contig9380.2.1|Name=mRNA_C-tenellus_contig9380.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=68bp
MSVERLTEVFQELKAGLVPLLREIQEKVKEEEEEDGGAAARRRYPSCLHS
GDEWDVEEQVIYLFIFC*
back to top

mRNA from alignment at C-tenellus_contig9380:576..2137-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9380.2.1 ID=mRNA_C-tenellus_contig9380.2.1|Name=mRNA_C-tenellus_contig9380.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1562bp|location=Sequence derived from alignment at C-tenellus_contig9380:576..2137- (Choristocarpus tenellus KU2346)
CCTGGGTGGAAGCAAGGGCCAAGAATGACTGGGGGATATTTGCACCGCTA
TTGGGGGAGGTAGGGGAGTGGAAAGAGTCTCGAGAAAGTTCTGCGTGTGG
GTCAGTTCTCCGGCAAATTTATCAGGGTTGTTGTACATGTTTGTTTTGTG
AGGTGTGGGGTTTGTTCTGAGGTATTGGGATGATCAACAAGGTCGCGCAC
TTGCGTGTGTGTGTGCGCGTGCGTGCTGCGCGATGACTGATCATGCAGAT
GTTATTTTATTGATAATTTGTTGGATCAGTGCTGAGCCGTATACAATTCC
CATGTGATGTCAATGTGGACTTTAAGTCTCAAGGTCTGTAATAGTAGTGG
ATCCAGTTGTAGGGTAGTATTCATTAGGTGTGCAGTGCAGGGTGGATACA
GCCTTTCAGTAGCGAACAAGGTGTACCTTAAAGATGGGCATTGATTTTTT
ACAGGCAGTTATTGTCTGAGGTTCACAAAGCAGAATTCAGATATCCCTAA
AGACAACGCTGCTGCTGTTTTGGTGGGAACATGTGGCTTAGCCTGCCTCT
CCTCATGTAAAGAGAGGGATAATTGTGAGGTGTGACCAGCAAGTGCCATG
CTTTGCCAAGCCCTCCTGCTGATATTCACAGATGGGTATGTACACACATA
TACATAATATGCGTATGTACTTGAGCATGTTAAAGTTGATGTAGTGGTGG
CAGGTTGCCAGGGGGAATCCTGGCACCTGCCTCTGATGGTGTTGACATGT
GTCTATTTCAGCAATCGTACATTTGATGTACAGCATCACTGTGGTCAATC
TTCAGTACTAATAGTATGTTGGGAAAGATGCTTAGTTATTCTGGACCTAG
CCTTAACACTAACCCTATGTGTGTATCTTGTCTCTATTGAGCTCTTTGTT
CACCATAGCCCTTGCTGTGTCCTTATCTAGCCTCTCACCCTAAGCCCTCT
ACACACACACACACACACATAAACAAGGCCTCCCAATGTTGTTGAGTAAA
TGCTGGAATGCCTCTTCTCGAGTTGAGTCATTCGAGAACAGCAATGAGCT
TCTAACTTACGGAGAGCTGAGTAGAAACGCCTCCTCCCGAAACTACAAAC
CTTTTGACTATTTGATAGCGCCACACACTCACGGCATCCATCTCTCGTGT
GCATGAACACGCCTGCGTCCTCGTGTAAACCTTTTGTGTACTCCGCTACC
GTGTACCAACCTCCCCCCTGCCTTGCCAAACATTTTATTATGTCTTTATT
TATTTCCGTTTCTTTCCCCGCAGATTGTGAGTCTACAGAAGGAAGTGGCA
GCCGCGACCCGTCCTGAGATGGACACCTATCAGGTGTGTGGACAAGTACG
AGAGAGGCATGTCTGTGGAGCGACTGACTGAGGTTTTCCAGGAACTGAAG
GCGGGCTTGGTGCCGCTCTTGAGGGAAATCCAGGAAAAGGTTAAGGAGGA
GGAAGAAGAAGATGGGGGGGCTGCGGCGAGGAGGAGGTATCCATCGTGCC
TTCACAGTGGGGATGAGTGGGACGTTGAAGAGCAGGTGATTTATTTATTT
ATTTTTTGCTAG
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig9380:576..2137-

>mRNA_C-tenellus_contig9380.2.1 ID=mRNA_C-tenellus_contig9380.2.1|Name=mRNA_C-tenellus_contig9380.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=204bp|location=Sequence derived from alignment at C-tenellus_contig9380:576..2137- (Choristocarpus tenellus KU2346)
ATGTCTGTGGAGCGACTGACTGAGGTTTTCCAGGAACTGAAGGCGGGCTT
GGTGCCGCTCTTGAGGGAAATCCAGGAAAAGGTTAAGGAGGAGGAAGAAG
AAGATGGGGGGGCTGCGGCGAGGAGGAGGTATCCATCGTGCCTTCACAGT
GGGGATGAGTGGGACGTTGAAGAGCAGGTGATTTATTTATTTATTTTTTG
CTAG
back to top