mRNA_C-tenellus_contig9356.1.3 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9356.1.3
Unique NamemRNA_C-tenellus_contig9356.1.3
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig9356.1.3 vs. uniprot
Match: A0A6H5JJK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK0_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 2.060e-5
Identity = 35/93 (37.63%), Postives = 48/93 (51.61%), Query Frame = 1 
Query: 1501 GNVDEAEPLFRQGIDELESALGPDHPDVAAVLSHLAALLND---------------------QGRNREARGLLERALATVERVYGPSHPVAVQ 1716
            G   EAEPL+R+  +  E+ALGP+HP +A  L++ A LL++                     QG+  EA  L ER+LA  E+V GP HP   Q
Sbjct:  736 GKFAEAEPLYRRATEIWETALGPEHPQMATALNNRAGLLSNVPPHSLSSFHSSNTHHVFITFQGKYEEAGPLYERSLAIREKVLGPDHPDVAQ 828
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BLAST of mRNA_C-tenellus_contig9356.1.3 vs. uniprot
Match: A0A6H5K5H9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H9_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 2.810e-5
Identity = 37/97 (38.14%), Postives = 48/97 (49.48%), Query Frame = 1 
Query: 1492 ILSGNVDEAEPLFRQGIDELESALGPDHPDVAAVLSHLAALLNDQ---------------GRNREARGLLERALATVERVYGPSH-PVAVQLRTVLG 1734
            +  G   EAEPL+ +     E+ALGP+HP+VA  L++ A LL DQ               G+  EA  L   +LA  E+VYGP H  VA  L    G
Sbjct:   28 VSQGKYAEAEPLYERWQAIFETALGPEHPNVATALNNRAGLLEDQRRQTNFSPPLPVTFQGKYEEAEPLYMLSLAIDEKVYGPDHLEVAEDLNNCAG 124
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9356.1.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JJK0_9PHAE2.060e-537.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5H9_9PHAE2.810e-538.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9356contigC-tenellus_contig9356:348..5810 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G180
PFAMsTPR_10,TPR_12
Model size1782
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons5
Evalue3.67e-06
EggNOG OGsCOG0457@1|root,KOG1840@2759|Eukaryota
Descriptiondetermination of stomach left/right asymmetry
Cds size972
COG categoryC
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9356.1.3prot_C-tenellus_contig9356.1.3Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9356 372..5024 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790172.182011-UTR-C-tenellus_contig9356:347..3711680790172.182011-UTR-C-tenellus_contig9356:347..371Choristocarpus tenellus KU2346UTRC-tenellus_contig9356 348..371 -
1680790172.2439752-UTR-C-tenellus_contig9356:5024..58101680790172.2439752-UTR-C-tenellus_contig9356:5024..5810Choristocarpus tenellus KU2346UTRC-tenellus_contig9356 5025..5810 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790172.192963-CDS-C-tenellus_contig9356:371..5031680790172.192963-CDS-C-tenellus_contig9356:371..503Choristocarpus tenellus KU2346CDSC-tenellus_contig9356 372..503 -
1680790172.2021205-CDS-C-tenellus_contig9356:1165..13221680790172.2021205-CDS-C-tenellus_contig9356:1165..1322Choristocarpus tenellus KU2346CDSC-tenellus_contig9356 1166..1322 -
1680790172.2146966-CDS-C-tenellus_contig9356:2550..28331680790172.2146966-CDS-C-tenellus_contig9356:2550..2833Choristocarpus tenellus KU2346CDSC-tenellus_contig9356 2551..2833 -
1680790172.22443-CDS-C-tenellus_contig9356:3372..35111680790172.22443-CDS-C-tenellus_contig9356:3372..3511Choristocarpus tenellus KU2346CDSC-tenellus_contig9356 3373..3511 -
1680790172.23452-CDS-C-tenellus_contig9356:4763..50241680790172.23452-CDS-C-tenellus_contig9356:4763..5024Choristocarpus tenellus KU2346CDSC-tenellus_contig9356 4764..5024 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9356.1.3

>prot_C-tenellus_contig9356.1.3 ID=prot_C-tenellus_contig9356.1.3|Name=mRNA_C-tenellus_contig9356.1.3|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=324bp
MQMMINAGKPTEAQELGRRALSIVESAYGPAHPELATCLNNLSALLHAQK
RDSEAEPLCRRALDISESVYGPQHPKVATCLNNLATQVQARGELEEAEDL
FSRALDIGRSAYGSSHPNVATGLSNLAGLLRCQGKLDEAEPLYRRAVEIG
DETLGPDHPDLATWLNNLATLVRDKGDVDGAEPLQRRAVAIGRRTLEAGH
PDLAAQIINLASLLGAQGVILAGGGVLDSVLISFYILSGNVDEAEPLFRQ
GIDELESALGPDHPDVAAVLSHLAALLNDQGRNREARGLLERALATVERV
YGPSHPVAVQLRTVLGPDGGYGL*
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mRNA from alignment at C-tenellus_contig9356:348..5810-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9356.1.3 ID=mRNA_C-tenellus_contig9356.1.3|Name=mRNA_C-tenellus_contig9356.1.3|organism=Choristocarpus tenellus KU2346|type=mRNA|length=5463bp|location=Sequence derived from alignment at C-tenellus_contig9356:348..5810- (Choristocarpus tenellus KU2346)
TAGTATTTAAAAAAGAAAAAGAAAAAGATTTGCTGTTGTTAGGTACATGA
TATTCGACAGTGTAATCACCTATTTCAACACCAAGGTGATGTTTCCCTCC
TATTTCAACACTAAGGTGATGTTTCCCTCCTATTTCAACACCAAGGTGAT
GTTTCCCTCCTATTTCAACACTAAATTGCTTGCAGGTTTTATTATCTCTA
GGTAATGCCGGCTCGAATACTACCTCCACTTAATGCAATGATGGTAGTAT
TAGGGTTAGGGTAGTATGGTAGTATGTTAGTATTAATAGTATAGCTGAAG
TACCTGTGCATTTTTTGATCTGCAATGAGAGTGGAATTACTTCTTTCAAG
TTTCTGACAATAGAAATCAATAGGGTTAGGGCTGCTGCCGATTTTCACGG
ACTTGACTCCTCTGACTTCTCCTGCCAGGAAATGATTTATTTATTTTGGG
GGGGGGGAGCACTCTGCGGTGGTTGTGGAATGAAATATATGTATGTGAAA
TATACGTGTATTTTTATTTTTATTTCGGTGTGCAGAAGAAAAAGAAAAAG
ACGTAGGTCCTCGATCGGCACCCTTTCTTCTTTTTTTTAAATCAAACCAA
TCTTATTTTTTATTTTGTGATTAATTTAAAAAAAAAACGAATTCGGATCA
AGAAAAAAAACTTTAATCTGTTGAGATGCAAACGCCTTCCATGATGGTTA
CTTTGAACGTGTGAATGTATGTGAATCTCTCTCTAGATATATATATATTT
GAAATAAAAAAGACCTATTAATATAAATATATATATATGCAAATGATGAT
AAATGCAGGGAAGCCCACAGAGGCCCAAGAACTTGGGAGGCGTGCTTTGT
CCATTGTGGAGAGTGCCTATGGCCCGGCCCACCCGGAGCTGGCGACCTGC
CTGAACAACCTGTCTGCACTGTTGCATGCACAGAAGAGGGACTCTGAGGC
TGAACCACTTTGTCGAAGGGCGTTAGATATCTCTGAGTCGGTATATGGAC
CACAGCACCCTAAGGTGGCTACTTGCCTCAACAATCTGGCAACACAGGTA
TAGGTTAGATGTGTTACACTCTACAAAGAATTTGTATGTATATTTTTTAT
ATATGTATGTTTTTATTTATTTGTATATGTGTATATATGTACGCATGTGT
AGTATTATTCTTATTTTTGAAACGATCTCGCCTCGGTATTATTTCTTACT
ATTTTTTTTTTGCTGTTTGGTTTTTAAGATCCGTTACCGGTAGTTAGTTA
CGTTTTATTTTTGATGCGTGTGTTACTGGTCGTAAAATGTTTTCCAGCAC
TTAAAAAAGTATATATATATATATAAAGGAACAGTTTTTAATTTTGCGTT
CGTATCCTTTTTCTTTTTTTAAAAAATCTGTTGAGAAATATATAATATAT
TTTTTTTTCTTATTATTTTTTTATTTTGTCACTCGTTTCTATAAATTGGA
GAGACTATATAAATATATGTATGTATATATGTATATTTATTTATTTATCC
TGGTCAATGATGGAGGAGAGATGTATTTGAAGTGAAGTGAAGGATGATTG
AATGGTATATGCAAGGAAGCGCTTGTTTGCCTACGTGATACCTAATCGCT
GGTCGGCTCACGGAAATGTCTAATTTAATGTCTAGTTTAATGTCTAATTT
AATGACACAAGAAAAGAATTTCCTTCATCTGCAGGAATAGTTGGTTGTTG
GGTTGAAATTGATTGGTTGGTGGGTTGATTGTTGTACTTGGGGGTTGGAT
TTGATTGGTTGGTGGGTTGATTGTTGTACTTGGGGGTTGGATTTGATGGG
TTGGTGGGTTGATTTGTTGTACTTAGGTCGAATTTGATTGTTTAGTGGGT
TGACTGTTGTACTTGTGTGTAGTGACTGACTGTCCCTGAAGCTTCCGACA
ACGATCATGTTTTGTTCTCCTCTCTCTCTCTCTCTCTTTCTGTAGTGTTG
TGTGTGTCCCTTTGATAACTTACTCTATGAGTTGTCCTCAGTCTTCTGTA
GCGCTACGGAGTGCTACACGCAGCCAGCCCACACAACAGCAATAAAAAAC
CCAATGGTTCTACATTAGGGTTAGGGTTAATGAATAGTTGGTATGGCGGT
ATTCGGGACAGGTGTAATAACTATCCCTAACCCTAATTCAAACCACCTTC
GCCTTTTTTTTTCTACCACATGCCTCCTGCACCAGTCCGTCTACAACTCC
AACCCCATCTTTTTTCTCTTCTGCTGGCTCTATTCCCCCCCCCCCCCCTC
CCCCCTTCAAAACCATGGGTATTGGTTTTGAATTCCTGTTGTGGTGCAGG
TGCAGGCGAGGGGAGAGCTGGAGGAGGCAGAAGACCTCTTTAGTCGGGCC
CTAGATATTGGGCGGTCTGCTTATGGATCCTCCCACCCCAATGTCGCCAC
GGGTCTCAGTAACCTGGCAGGCCTTCTTCGATGTCAAGGTGCTTGACTGC
TGGAGTTGTGCATTGAACGTACATTTTTTTTTTTCTGTCGTAGATTTACT
GTGCATTGAACGTGCGTTTTTTTTTTTTTTGTTTTTTATTTGTTTTAATC
GCTATTGCGATGTATTTTTTCTGTTCATAGATTATTATTATTATTATTAT
TATGTAAAAAAAAATGCAGTGTTTTTTTTTTTTCTTCTGTCCTTTCCTTC
TTGGGTTATTTTTATCTGTTTTCTGTGCTTCTTTTTTTTTTCAAGGATGA
AAAAGGGATAGATGTCTTGTTCCTCTCTACTAGTAATAATCATTTCATAT
ATTGATTCTATTCAGGAATTTTTCAGGGCTTTGTATGATTTCTACCAGAC
TGGGTAAATGTGAAGGGATCAGTCATAGAGATATCAACAGGATTGAGCCA
TGTACGCATACAAACACACACAGATACATAACCTATACATGTATAATATT
AACTAATATATATAATATTAACTATTAGAACCACCACCCACTCCTGATGT
GACCTTCTGTTAATCATGTGTTAACAGGTAAACTGGATGAGGCAGAGCCC
CTCTATCGCAGGGCTGTTGAGATAGGTGACGAGACTCTAGGACCAGACCA
CCCGGATTTGGCCACGTGGCTCAACAACCTGGCCACCCTTGTGAGGGACA
AGGGTGATGTGGATGGGGCAGAGCCTTTGCAGAGGAGGGCAGTGGCTATT
GGAAGGCGTACCCTGGAGGCGGGACACCCGGACCTGGCTGCTCAGATCAT
TAACCTGGCTTCACTTCTTGGGGCACAAGGTGTGATCTTGGCAGGGGGGG
GGGTATTGGAGTATGCTGGTAGGGATTTTGTGTTGTGTGATTGTAGGTTT
GGTTAGATGCCTGTTTTATGTATGTATGTGTTAGGTGGTTAGGTGTTTGT
GTGTGTAACGCATGTTTTAATTAATGTATGTATGTCTTGGGTAGATGTTG
AATGTGCAATATGTTTTTTGTACGGTTTGACAGGGAAAAAAGAAAAAAAG
AATTGTTTGGGGTGGGAAAGGGGTGGTGGGGGGAAAGGGGAAGGGGGTGG
GGGGGGGGGGGGGGTGGGGGGAAGGCGGAGGGAGGAGGGAGGAGGGATTC
TGAGGTTGAATGCATCTCATTTTCTGGTGTTGAAGTAGGTTATCAGGGTT
AGGGCTTGGGTCATTGGTGTACACACTGTGATCTGTATCATACTATGTGT
AGTTATTTGTATCACACTATGTGTAGTGATCGTTGTTGATTTATTTTTTT
GTGGGGTGCAGTGTTTGTGATAGTAGTATAGTAATTCCAACACTGCGTAT
TATTTGTTGGAGTGGATTTTGTAGGACCTTGGGAGGGCTTAGTTTGGGCT
GAGTTCATGGCGTGTGACTCTTTTTTTTTTAGTGACCAACAAGTTGAGGT
TACTGTTACTGGTGGATGGAATGTGTGAGTGTTGCTGAATGATTTGTATG
TTAGTTAGTATCAACATAAGCTTTGTGGAGAGGGTGTATGTCTTCGTTTA
TTTATTTATTTTTGGGGGGGGGGTAGGGAAGGTATGGTGTCTTCCTTGAA
GCTGAGATATTAGTATGGGTTGGGCTTATAAAGTGTGTATGTGTAGATTA
TTCAAATAAGGCTCTGACTCCGATGTGTGCATGTGTGTATTGAGAATATG
CAGCAGATACAATTGACTTGATTTTTATTTTTGAAAAGTTGGGATAAGAT
TAAATAATTAAAATAATAATAATTAATCGTTCTTTTGGACATATCCCTCC
CCCCCCACCAAAAAAAAAAATGAACATATTTTTCTTTCATTTTGAAACCT
CTTATGTTGTTGTCGATTTTTTTAATTTTTCAGCAATGTAATTAATTGAC
ATAAATGTACTGCTATTGCCAGAGAGATGTCAGTACACACCTCTCCTCTA
TCAAGATGTTCAAAGAATATTGCATGACATTGCTTTTGATGTTGTATCTG
AAGGCAGGAAAGGTTTTGAAAATTTCAAGAGTAACTTCATGAACGTATTA
TTATTATTATTATTATTATGGTGTTAAAAAAAAAGTAGCTCCGTTCTCAT
TTCATTCTATATTTTGTCAGGAAATGTGGATGAAGCAGAGCCCTTGTTCC
GTCAGGGCATTGATGAGCTCGAGTCTGCATTGGGCCCGGACCACCCTGAT
GTGGCCGCAGTCCTGAGCCACCTTGCTGCCCTCCTGAATGATCAGGTTTG
TTTCATATGTTTCTATATATATATATTTGTGCGTATGTGTGTATGTTGTT
TTTTTAGGGGGGGGGGGGGGGGGGGGGGGCGAAACACCGGGTGTGCCCGG
GGGGGGGGNNNNNGATTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTG
TTGGTTTTTGTGGTTTTGGGGGGGGGGGGGGGGGGGGGGGGGGTGTTCAG
AATCACCGGTTGTGTCCGACGGTGGGGTCCTTTCAGCAAAAAAGGTTCTT
ACGGGTCTCAGATCCGGCGGGTGATATCACACCTAAAATGTTCTTTGTTG
ACGGTCAATGGTGAGTGGTTTCTGAGGGGGATGATGTTAGGTTCCTCAGA
AGTTTTCTGTGTTTGATTGATGTTGGTGGCAAAGTCACCACTGAAAAAGA
ATTGTGCGTGCAATGCACTTGTGTGTGGTAACCCTAACCCTAACCCTTGT
GTGTGTGCACACGGATGTGGAATAGACAGTTGGTATAGTGTTGGAATTTA
AGACCACTATTTGTGTGTGTGCGTGAATATAGACAGTTGGTATAGTGTAC
ATCCCATTTTTTACATTGCGTTGTATTGTATGTAGGTGTTACTTGATAAT
GAATGCAAGCGTGTGCGTGTGTGTGTGTGTGTGTGTTATGTTTCATGCTT
GGAACAGGGCCGAAACAGGGAGGCAAGGGGTCTGCTGGAACGGGCGCTGG
CCACGGTTGAACGAGTTTATGGCCCATCACATCCTGTTGCCGTTCAGCTT
CGAACAGTCCTTGGACCAGATGGGGGTTATGGCCTGTAGTGAAGGAGGAT
ATATGGCTCTTAG
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Coding sequence (CDS) from alignment at C-tenellus_contig9356:348..5810-

>mRNA_C-tenellus_contig9356.1.3 ID=mRNA_C-tenellus_contig9356.1.3|Name=mRNA_C-tenellus_contig9356.1.3|organism=Choristocarpus tenellus KU2346|type=CDS|length=972bp|location=Sequence derived from alignment at C-tenellus_contig9356:348..5810- (Choristocarpus tenellus KU2346)
ATGCAAATGATGATAAATGCAGGGAAGCCCACAGAGGCCCAAGAACTTGG
GAGGCGTGCTTTGTCCATTGTGGAGAGTGCCTATGGCCCGGCCCACCCGG
AGCTGGCGACCTGCCTGAACAACCTGTCTGCACTGTTGCATGCACAGAAG
AGGGACTCTGAGGCTGAACCACTTTGTCGAAGGGCGTTAGATATCTCTGA
GTCGGTATATGGACCACAGCACCCTAAGGTGGCTACTTGCCTCAACAATC
TGGCAACACAGGTGCAGGCGAGGGGAGAGCTGGAGGAGGCAGAAGACCTC
TTTAGTCGGGCCCTAGATATTGGGCGGTCTGCTTATGGATCCTCCCACCC
CAATGTCGCCACGGGTCTCAGTAACCTGGCAGGCCTTCTTCGATGTCAAG
GTAAACTGGATGAGGCAGAGCCCCTCTATCGCAGGGCTGTTGAGATAGGT
GACGAGACTCTAGGACCAGACCACCCGGATTTGGCCACGTGGCTCAACAA
CCTGGCCACCCTTGTGAGGGACAAGGGTGATGTGGATGGGGCAGAGCCTT
TGCAGAGGAGGGCAGTGGCTATTGGAAGGCGTACCCTGGAGGCGGGACAC
CCGGACCTGGCTGCTCAGATCATTAACCTGGCTTCACTTCTTGGGGCACA
AGGTGTGATCTTGGCAGGGGGGGGGGTATTGGACTCCGTTCTCATTTCAT
TCTATATTTTGTCAGGAAATGTGGATGAAGCAGAGCCCTTGTTCCGTCAG
GGCATTGATGAGCTCGAGTCTGCATTGGGCCCGGACCACCCTGATGTGGC
CGCAGTCCTGAGCCACCTTGCTGCCCTCCTGAATGATCAGGGCCGAAACA
GGGAGGCAAGGGGTCTGCTGGAACGGGCGCTGGCCACGGTTGAACGAGTT
TATGGCCCATCACATCCTGTTGCCGTTCAGCTTCGAACAGTCCTTGGACC
AGATGGGGGTTATGGCCTGTAG
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