prot_C-tenellus_contig935.3.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_C-tenellus_contig935.3.1
Unique Name	prot_C-tenellus_contig935.3.1
Type	polypeptide
Organism	Choristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length	96

Homology

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BLAST of mRNA_C-tenellus_contig935.3.1 vs. uniprot
Match: A0A6H5JSM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSM1_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 3.000e-8
Identity = 28/88 (31.82%), Postives = 49/88 (55.68%), Query Frame = 0

Query:    8 PMPSQLRLGRFLMSTIFVLYFGAALVGALEVLAVHLIIRTWLEVLVNILISLMSFWVGNNIFRWFQDWVVMDPELDPPMWVLDFCTIS 95
            P+   +R+ R     I+ L  G A+VG +E +    +   WL+++ N   + ++F VG  IF    +WV+ DP L+ P+++LD C +S
Sbjct:   60 PVEDNVRVVRHQSFVIWTLCCGTAVVGTMEAMVASYVRPWWLQIMANAGFTFLAFVVGCGIFGHSHEWVLRDPNLEKPLFLLDVCVVS 147

The following BLAST results are available for this feature:

BLAST of mRNA_C-tenellus_contig935.3.1 vs. uniprot

BLAST of mRNA_C-tenellus_contig935.3.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A6H5JSM1_9PHAE	3.000e-8	31.82	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..20
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 21..45
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 51..69
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 46..50
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 70..95

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-tenellus_contig935	contig	C-tenellus_contig935:2359..2646 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Choristocarpus tenellus KU2346 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_C-tenellus_contig935.3.1	mRNA_C-tenellus_contig935.3.1	Choristocarpus tenellus KU2346	mRNA	C-tenellus_contig935 2159..3589 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_C-tenellus_contig935.3.1 ID=prot_C-tenellus_contig935.3.1|Name=mRNA_C-tenellus_contig935.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=96bp
MLFNIATPMPSQLRLGRFLMSTIFVLYFGAALVGALEVLAVHLIIRTWLE
VLVNILISLMSFWVGNNIFRWFQDWVVMDPELDPPMWVLDFCTIS*