mRNA_C-tenellus_contig9327.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9327.1.1
Unique NamemRNA_C-tenellus_contig9327.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig9327.1.1 vs. uniprot
Match: D8LJE4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJE4_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 1.910e-5
Identity = 43/152 (28.29%), Postives = 66/152 (43.42%), Query Frame = 3 
Query: 1032 PKRP*IALSAGVNSVDVEITSPRLGKDWGGYNEVCRPCEDIFPTSRDGVLERNIRLRGEPKSGTGFLFSSSVLSLKIICGFLNDIYGVNSCTIE------EVKRGPFAAT--------LFFIPSNGKE-----------APCPCSTVKRCLI 1412
            P++  I+  +G     +E  S  L K      + C PCE +F           ++LRGEPKSGT F+F  +V +L + C  L  +YG  +CT          K+ P +          +FF+    ++           +PCPCSTV +  I
Sbjct:   52 PEQLSISKGSGGAWSSLETGSTGLRKLQA---DECPPCETMFGKLNGAQQHVELQLRGEPKSGTSFMFEWAVNALMVTCEELGRLYGEGTCTFRWRGFFSRRKQKPVSPETALVDMKEVFFVFKPNRQHGRSSAGGPSASPCPCSTVDKVSI 200
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9327.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJE4_ECTSI1.910e-528.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9327contigC-tenellus_contig9327:2..3333 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2504
Hectar predicted targeting categoryother localisation
Exons2
Cds size675
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790170.6003153-UTR-C-tenellus_contig9327:1..2181680790170.6003153-UTR-C-tenellus_contig9327:1..218Choristocarpus tenellus KU2346UTRC-tenellus_contig9327 2..218 -
1680790170.6217308-UTR-C-tenellus_contig9327:893..11031680790170.6217308-UTR-C-tenellus_contig9327:893..1103Choristocarpus tenellus KU2346UTRC-tenellus_contig9327 894..1103 -
1680790170.6329954-UTR-C-tenellus_contig9327:1931..33331680790170.6329954-UTR-C-tenellus_contig9327:1931..3333Choristocarpus tenellus KU2346UTRC-tenellus_contig9327 1932..3333 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790170.6108932-CDS-C-tenellus_contig9327:218..8931680790170.6108932-CDS-C-tenellus_contig9327:218..893Choristocarpus tenellus KU2346CDSC-tenellus_contig9327 219..893 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9327.1.1prot_C-tenellus_contig9327.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9327 219..893 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9327.1.1

>prot_C-tenellus_contig9327.1.1 ID=prot_C-tenellus_contig9327.1.1|Name=mRNA_C-tenellus_contig9327.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=225bp
MGGYDKHELPLGLDCNMTYWSRFTSARTDPPSYPCPDVTNVTIPEVKNKF
LACLDKSLGKRGCSIVDKSSQLAIIRDPRAAATSLYFMERNHNGRDAQVE
LNSYVFSLLSNYCQRTMVRNLLFGTVLRSESLVLFYEDVLSDQSMFFHQV
ISFFGMNLPEVVIQDCIDAPQQVFDLHVGGKLEDRHVQTPFTEELNSETL
QKMDEVMRLWLSPELLVRWNVDIQ*
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mRNA from alignment at C-tenellus_contig9327:2..3333-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9327.1.1 ID=mRNA_C-tenellus_contig9327.1.1|Name=mRNA_C-tenellus_contig9327.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3332bp|location=Sequence derived from alignment at C-tenellus_contig9327:2..3333- (Choristocarpus tenellus KU2346)
ACATCTGTCTTCTTGACCTGACTGGAAGATGCGAATCGCGAGCCTCTCTC
TCGCTGCTGCAATTGGCATCTGGGCAGACCAGGGTAAGCGGTAGTCCGAT
AGTTGCTTGCTGAAAGCAACGAGGTCTAGAGTATAAGAATGAGTCAACTT
ATAATATGTGTCGGCTTTTACACTGAAGTTAGCTGTGCCCTACAGTCATC
GTGTTTGGAGACTGTAGTCCTTTCGATTATTTTGGGACTCTGTCCTTCAC
CACATGATCCTACTAAGCGACAGGTGATTGAAATGGAAGAGAAAAACCTT
GCACTATGGATCCATGATGCTCATCTGCCCCTCCAAACTTCTCTCAACTC
ATCTTTTCCATGTACAGAATCATTGCCACCCTCAGTCGCAATCTGAAGAA
CTGACCCCGATCCGCATACCCTTGGATGCTTACTTGTGATTTCTGATGCG
ATTAAGCGGGGCATAGGGCTCTCTCTAGCGATTATCTCCTACTACGACCT
GTATGCAGCTGTGGCGTAATCCAGAGCGTTGGTTGAGGATGAAGTAGATA
TATTTTGTCAACCTCCAACTGTGGTGTCTTGTTGCTGCAGGATATTGTAC
ACGTGTAACTCGAAGTATTCTGTCTGTGTCAGCATTATCTACATCACTTC
ACGACTCTTGCTGTCTAACATATCGTGGTAGGGGTTTCATAGTTTCGGGT
ATTGCTGAATGTGTCACAGGGGTACGTAAACACAACATCTTGGGGTTCTG
GGGTAGAAAAAAAAGCGTGGGTTGTGTCACAATTTATTTTCACGAAGTTT
TGACATGCTCAAGGCTTAAATCCGTTGCTCCACATGAAGTTGATGCAATT
CCACCAATGACCAAACAAGTGCAGACAGAAGGGTCACAGATCACCCTCTG
GTTTTCATTCTACATCCCGCATCAGAGATGATAATGTAAACAGAATATTT
TCTTACAAAGTTTTTCAATCGTTTATAATATTAGGTAATAATTGGCAAGA
TTCCTTCACCCCACCACATTGATGCCTACACCCCAAACGCCCCTAAATTG
CACTATCTGCAGGAGTTAATTCTGTTGATGTGGAAATAACCTCCCCAAGA
CTTGGAAAAGATTGGGGTGGGTATAATGAGGTATGTCGCCCATGTGAAGA
CATTTTTCCTACGTCACGTGACGGAGTGCTTGAGAGGAATATTCGGCTTC
GGGGTGAGCCAAAGAGTGGAACAGGCTTTCTATTCTCATCTAGTGTGCTA
AGTCTGAAGATTATTTGTGGATTTCTCAATGATATCTACGGGGTTAATAG
TTGCACAATCGAAGAGGTGAAAAGGGGTCCTTTCGCCGCAACATTGTTCT
TCATACCGAGTAATGGCAAAGAAGCTCCCTGTCCTTGTTCTACTGTGAAG
AGGTACGTGCAAAGTATTAGCCGATTGCCGAATCTTTTACCAAATGGGGT
TGAAAACTGCAATCTACCTGTCCATGTTATGACTCTTAGTCATAATATGT
CATTTTTACAACAATAATTGTTGTAGGACCTTGCACGAACAAATTGTAAC
CACCCAACCTTGATGAACTTCAAAGATTGAGGAAATGTGGGTAGGAGGTA
TAGAGGGGTACAGGACAAATATACACTGTTGTGAAATGTGACCCACACTT
TCTTACCACTGTATTTGTGTAGATGTCGCTACCTGTACAATGTCTTCTGT
TGCCGCCGTTCTTTCTGGCAAGAATTTGCGTCAGCAAAACACACCTCACA
ATGTACCATGCCGCAACTGACTAACTGCATTCAACTCCATTAGTTCCCAG
ATAACACTTGCTTCGAGACAGTGTATCATTTCAGCAAAAATCTTGGTCAT
CTAGGTTACATTCTTTTAATTTTACGGGGAGTTGTGAAGTTGAGATGAAT
CGAATGGATTTTTGATCTTTTAGGTTGTCACATGAATATATTTAGGTGAC
GATCACAAAGTGGAACGCAATGACAGACACGATATCACTTTGGCACACAG
TTCCTAGTGGAAAATATATTATCATGTAGGGCCAGAGTTGGCGACAAGAG
AGACATATTCTGTGCATGCGTCTTGGTATTATATGCTGCATAACAATAAC
AAGAATATCGCAAAATACCCTCATTTTCAAGGATAAAAGACTCCATACAA
GAGCTGAGATTGTATCATTTTGGAGAGTATCATGTTTCATAGTATGGTTG
TATGTTCCTGTATTGTTGATTCCCACCCAGGTGCCTCATTACCCGTTGGG
AACTGTTGTCTGTGACAACTCCATTATTTCTTCTTATCCAAGCTTCAACC
TCACACGTTACCTCAACTATACAGGTCCAACTAGGTACACGTAAGTACAA
CACATGAACTGCTTGAATTCCTCTTCCGCTATTTCCTCAAGTGTGTATTT
TGAACCCCGTGCATGACCCTGACACAGGGTTAAAATACGTATGGGGGGAT
ATGATAAGCATGAGCTCCCTCTTGGACTGGATTGCAACATGACCTACTGG
TCTAGGTTCACATCTGCAAGAACTGACCCTCCTAGCTATCCATGCCCTGA
TGTCACTAATGTGACCATACCAGAGGTCAAAAATAAATTCTTGGCGTGCT
TGGATAAATCCCTTGGCAAACGTGGTTGCAGCATTGTGGACAAGAGCTCC
CAGTTGGCCATAATTCGTGATCCTCGAGCAGCAGCAACAAGTCTGTACTT
CATGGAAAGAAACCATAACGGGAGAGATGCACAAGTCGAGTTAAATTCAT
ATGTTTTCAGCCTGCTGTCCAACTACTGCCAAAGGACAATGGTCAGGAAT
TTACTATTTGGGACAGTTCTTCGATCAGAATCGCTAGTTTTGTTCTATGA
AGATGTACTCTCTGATCAATCAATGTTCTTCCACCAAGTTATCAGTTTCT
TTGGTATGAACTTGCCGGAAGTTGTTATCCAGGACTGCATTGATGCTCCT
CAGCAGGTGTTTGATTTGCACGTGGGGGGGAAGTTGGAGGATCGTCACGT
CCAGACACCCTTTACGGAAGAGCTTAATTCCGAAACCCTTCAAAAAATGG
ATGAGGTCATGCGTTTATGGCTTTCGCCTGAGCTTCTCGTTCGATGGAAT
GTGGATATTCAGTAGGATTGCATGGCTACGTTATTACTATAAGTGTTAGC
CGATACTACGTCAGTGTTAGACTTGTTGTCAGGTGTGGTTTTCTTCATAT
GGAAGTAGTTTACAGTGGGGCAGGCAAAAATGTTTTGATACATACATCCA
CATGGATGGATAACGTATGTGCACTTTTCCTAGTTATGGCCCAAATAGAC
ACCCTGGTGTTGACCCCCCCCCCCCCCTCCCC
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Coding sequence (CDS) from alignment at C-tenellus_contig9327:2..3333-

>mRNA_C-tenellus_contig9327.1.1 ID=mRNA_C-tenellus_contig9327.1.1|Name=mRNA_C-tenellus_contig9327.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=675bp|location=Sequence derived from alignment at C-tenellus_contig9327:2..3333- (Choristocarpus tenellus KU2346)
ATGGGGGGATATGATAAGCATGAGCTCCCTCTTGGACTGGATTGCAACAT
GACCTACTGGTCTAGGTTCACATCTGCAAGAACTGACCCTCCTAGCTATC
CATGCCCTGATGTCACTAATGTGACCATACCAGAGGTCAAAAATAAATTC
TTGGCGTGCTTGGATAAATCCCTTGGCAAACGTGGTTGCAGCATTGTGGA
CAAGAGCTCCCAGTTGGCCATAATTCGTGATCCTCGAGCAGCAGCAACAA
GTCTGTACTTCATGGAAAGAAACCATAACGGGAGAGATGCACAAGTCGAG
TTAAATTCATATGTTTTCAGCCTGCTGTCCAACTACTGCCAAAGGACAAT
GGTCAGGAATTTACTATTTGGGACAGTTCTTCGATCAGAATCGCTAGTTT
TGTTCTATGAAGATGTACTCTCTGATCAATCAATGTTCTTCCACCAAGTT
ATCAGTTTCTTTGGTATGAACTTGCCGGAAGTTGTTATCCAGGACTGCAT
TGATGCTCCTCAGCAGGTGTTTGATTTGCACGTGGGGGGGAAGTTGGAGG
ATCGTCACGTCCAGACACCCTTTACGGAAGAGCTTAATTCCGAAACCCTT
CAAAAAATGGATGAGGTCATGCGTTTATGGCTTTCGCCTGAGCTTCTCGT
TCGATGGAATGTGGATATTCAGTAG
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