mRNA_C-tenellus_contig930.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig930.1.1
Unique NamemRNA_C-tenellus_contig930.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig930.1.1 vs. uniprot
Match: D7G8C1_ECTSI (Hypothetical leucine rich repeat zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C1_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 1.320e-15
Identity = 87/202 (43.07%), Postives = 106/202 (52.48%), Query Frame = 3 
Query:  885 CLTDNAVLELLRWCEVHSLDLSKAPPTVTDALLVSILTLPALDWRKFG*AGLHTSGRWKHCF*RSGWRRLIGRYYNHLQSSNQELTTVL------REDQACSLRVLDVRGNVDISDGILKALAGRCPLLSSLLIDACPQLNGLFLERXXXXXXXXXXXXXXXXXXLDDIVLHNYIMESGAFKAGSLTCLELAGCAVGTLSIQ 1472
            C T + +L+LLRWC    LDL    P VTD+LL   L  P          G   +   + C    GW         HL      L  +       +ED+AC+LRVLDV G+  +SDGILKALAGRCP LS+L               XXXXXXXXXXXXXXXXXX     + N+IMES A  +GSL  L L GC +G+L+ Q
Sbjct:    3 CQTTSGILDLLRWCTPRVLDLEGVSPAVTDSLL---LRYP----------GESCAMLEEVCL---GW-------CPHLLEVEALLLKIRNAGVDGQEDEACALRVLDVGGSEGLSDGILKALAGRCPALSTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVSNFIMESEAVASGSLHSLRLGGCPIGSLTAQ 181
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig930.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8C1_ECTSI1.320e-1543.07Hypothetical leucine rich repeat zinc finger prote... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig930contigC-tenellus_contig930:386..7197 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1473
Hectar predicted targeting categoryother localisation
Exons6
Cds size378
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig930.1.1prot_C-tenellus_contig930.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig930 5452..6544 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790169.732641-UTR-C-tenellus_contig930:385..4991680790169.732641-UTR-C-tenellus_contig930:385..499Choristocarpus tenellus KU2346UTRC-tenellus_contig930 386..499 -
1680790169.7462308-UTR-C-tenellus_contig930:3080..32131680790169.7462308-UTR-C-tenellus_contig930:3080..3213Choristocarpus tenellus KU2346UTRC-tenellus_contig930 3081..3213 -
1680790169.7612443-UTR-C-tenellus_contig930:4476..45481680790169.7612443-UTR-C-tenellus_contig930:4476..4548Choristocarpus tenellus KU2346UTRC-tenellus_contig930 4477..4548 -
1680790169.7735915-UTR-C-tenellus_contig930:5328..54511680790169.7735915-UTR-C-tenellus_contig930:5328..5451Choristocarpus tenellus KU2346UTRC-tenellus_contig930 5329..5451 -
1680790169.816938-UTR-C-tenellus_contig930:6544..71971680790169.816938-UTR-C-tenellus_contig930:6544..7197Choristocarpus tenellus KU2346UTRC-tenellus_contig930 6545..7197 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790169.7887368-CDS-C-tenellus_contig930:5451..54951680790169.7887368-CDS-C-tenellus_contig930:5451..5495Choristocarpus tenellus KU2346CDSC-tenellus_contig930 5452..5495 -
1680790169.79789-CDS-C-tenellus_contig930:5991..62681680790169.79789-CDS-C-tenellus_contig930:5991..6268Choristocarpus tenellus KU2346CDSC-tenellus_contig930 5992..6268 -
1680790169.8071826-CDS-C-tenellus_contig930:6487..65441680790169.8071826-CDS-C-tenellus_contig930:6487..6544Choristocarpus tenellus KU2346CDSC-tenellus_contig930 6488..6544 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig930.1.1

>prot_C-tenellus_contig930.1.1 ID=prot_C-tenellus_contig930.1.1|Name=mRNA_C-tenellus_contig930.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=126bp
MIPQFGENEGCLSNLVLSKVCWCLASPDPAVINALLSRWRVGSRSATGRH
SLKAQPTKDIIPSALGEMILQWAKRTNCLTDNAVLELLRWCEVHSLDLSK
APPTVTDALLVSILTLPALDWRKFG*
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mRNA from alignment at C-tenellus_contig930:386..7197-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig930.1.1 ID=mRNA_C-tenellus_contig930.1.1|Name=mRNA_C-tenellus_contig930.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=6812bp|location=Sequence derived from alignment at C-tenellus_contig930:386..7197- (Choristocarpus tenellus KU2346)
AAACATCCCAACCCCACACCTGTGTGATAAACGGCTTCTCCAAAGTAGAA
AGAATAGTGTGTTTTGGAAGAATGGGAAGTTTCGATGGACCTCTGCGAGT
ATGCATTGATATTAGTATTTGTCCAATCCCCCACGTACCGTTGTTGGAGA
GAAGATGATTATAATCAGAGAGGATGATGCCACACACTCCCTATCACTAC
GCGCTGGTTGTTTCGACCCCTATTTTCCCTGTTCCCACGATGTCACTCTC
TTTCGTTGTACTCTTCGTATGATGACGATTTCGTATGTTGATGACTTGTG
GGGTGACGAGTTCGTTTGTGTTTTTCGCTATGTTTCGGGTCTAATTTTGT
AATTTGGGGAAGATTTAACATTTCTACCCAAACAATCATTTTCCTACAAA
ATCTCAACAGAGTTTGGGTTTTTGAAGGTTGTATCGAGACAATAAAGTAT
CGATCAAGTAAAGCAACACACCAATCAAGTAAAGGAAGGAGTGAGGAGAG
ATACTGCCTCCCATTGCATAGGGTCACTGCCTATATACATATCTTGCCAC
CCCACCTAATCGCAACCCAAAGATATCCCTTTCTCTGTTAGAAGGCGAAC
CTCGGACAGGTGTTACTGTATGTGGTAGGAACCTGTAGTCCTCCAGCACC
ACCATGATCCCTCAGTTCGGGGAGAACGAAGGATGCCTTTCGAATCTGGT
CTTGAGTAAGGTGATAAGTTAATCTTAAGTAGGACAAAAAATGCTCTCAT
TTGCTCTGTGTGGGAAATTATGCCCACTTTCGCTATACAAGTCACCCCTG
TCCAACTCTTATCTCTGCACACAGGTTGGGATTGCCCTCATCTTTCTCAC
TGCACAGCCCTGATCTCGCGCATTGCCTCCCTATCTTTCCTGACTGGTTC
TCTCCTTCCCACGCCATGCTGATCTGCAGGTGTGTTGGTGCCTTGCCTCC
CCTGATCCAGCTGTCATAAATGCCCTTTTGTCGCGTTGGAGGGTGGGCTC
GCGCTCAGCGACAGGCCGGCACTCGTTGAAGGCACAACCGACGAAAGACA
TCATTCCGTCAGCCCTGGGAGAAATGATTTTGCAATGGGCTAAGCGGACA
AATTGCTTGACAGACAACGCGGTTCTTGAGCTGCTGCGGTGGTGCGAAGT
GCACTCTTTGGATCTTTCCAAGGCGCCCCCTACCGTCACTGACGCCCTGC
TCGTCAGTTGAGGAGTTATGGGGGGGAAAATTGGGGGCTTCTCCTATCGA
GATACAATATAGCTTGACGATTGTGATGTGCATATCGACGAGGAATACTA
TATTACCAGGGTAGAATATTCGCTGTGTTGCCCGTTACGGAGCCACCAAG
GACCGGTACTTCCGCATTGCAACCATAATACACCCTGCGACTGCTTACTC
TAGGTGCTCTTAACCCCCCTAGCCTTATGTTCTTTCCGGACTCATCCTAT
GTGCCTGCTCAGCCCTCCATCTTTGGCGAACGCAGTTCATTGTTTTTGCC
TTTTCTGTTACTACAATACAAACATCCTCAATACACCACATGCGTACCAT
GCAGAAGTATCTATCCATTAGCCTTGCCCCATCATCCGTCCCCTCCATCA
CTCATCCCATGCAATCTCTTCCCTCCCTCTTCAGTCTATCACGGCCATCC
TGCTGCACTCCTCCCTATCCCAAGTGACACATGAACACTTGTATTTCCTC
AGGTATCCTAACTCTGCCTGCTCTAGACTGGAGGAAGTTTGGCTAGGCTG
GTCTCCACACCTCAGGCAGGTGGAAGCATTGCTTCTGAAGATCAGGATGG
CGGAGGTTGATAGGAAGGTACTACAACCACCTGCAAAGCAGCAATCAAGA
ATTGACCACAGTGTTGAGGGTATGATACACAGGAATTTGGTTTTGTATGC
AAACTGTCATGGCTCCTATGTTCAGTAATTCCATTTGAGGGGGGACAGTG
GTGGATGGGATTTGAAATATTGTAGTATGTCCAAAAGTATATGCCCCAAA
TTCTAATGTGGTCTCATGTATACATCGCCTCAATAATACTCAAGAGTTGC
TCTAAGATCTGTGTGGGGGAATTTCATGCCGATGCCCAGGTTAATGGGAC
AGAGTTGAGCAGGAAGGGCTGGGAGGGGGTGAGGCAGGGTGTTGCCGAGT
ATTTTGTGAGTGCCAATATTTTGGGTGAGTAGGTGATTTTGATGCAGGAA
TACTATGCAAGCAGACACTGAGATCGCACCTACTATATGTATCAAGTATG
TTGCTAGCCATGGGATTGGGGGTTCAACAAGGAGGCATACTAGAGCAGCA
ACTCTCGTGATAGGATGCCACTGTTAATATTCCTCCAGGGAAACACTCGA
TAAAATGGAAAATGGAAGCACAGAAATTTAGCAATCACCATCTAAAGATG
TAGTAGTAGGTGTGTTACGTCACAATCCTCAGATGTGGAGATTAGGATAG
GTTACTGAATTTGTGATTATGGGAGATAATCTCGAACCAATGATTTTTTA
TTTGAAAATCTTGAGGTGGGGGAATGTTTGAGTTTTTTTTCGAAAGAAAA
TACCCTCATTTTAAAGTCTTTCCCCCCGCTCCACTTTCACTGTCTTGTCA
ATGGCAATGTGATTGTGATTGACTTTCATATATTTGATTTAACATTCAGG
AGGATCAGGCTTGCTCCTTGCGCGTTCTTGATGTGAGAGGCAATGTGGAC
ATATCAGATGGAATTTTGAAGGTAAGCTACAGGGAGGTGTGAGAGCAGAC
TGCTGTGATGTGCATTGAACAGGGTGTAGGTTTGGGTGCAGGTGTGAGTC
AGGAAAAATGAGCAAGGGGGGTATACTCCAGTCTCTCTTGTTGTGTTTGA
AGAAGCCCCACGAGGTGTATAGAGAAGATGCTTGAGGTGCATTTGCAGCC
ACTGCTGTACTTTTGCACTGATGTGCATGCACGATGAAGTTGTTGGGTTA
CAAAGACATTAGGTTATGATAGTAATTTTGTTGATAATTCCTTAATCATG
TATGATACAATGTGTAACTGTCATACTAGAGTCCAGTAGTTAGAGAACAG
CACTACAGAGCCAGAATATTTTGGAACACGTCGCAGATAATTTGGACATA
TTACGCAGTTGGCATTTCTTACAGCCGAAGCAGCGGTCATACCTGTTTTA
TGTCATGTTTGTTTATGATGGACAAGGGCATGATTGTCCATGCCTGAACC
TCTTCAAATGATAGCTTGAGAGTTGAACCCACTAGGATGCGGTGAAGCAC
CAAGGGCCTACTGTTAGCTCATTGCTTTCTCGACATGTATTCATCTTCTC
AACGTTTCTGTCCTTCTCACTGATGGGCACACACTCTTCTGGCCCCACAA
CCCGTCCTATCTGCTAGTAGCACTTTTGTTTTGGACGATTGCTCCCATCA
CACACAACTGGAACATTCAACCACTCCTTCATAATACCTGACCCACACAC
CTACCATAATGGACAGTACATTTTAACCCCCTCTTGGTACAAGTATGTAT
TTCAGTATTTTGTATTACCGAAACTGTTTTCAATGCCCCCCCTTGGTTCA
CAAGGCTAGCTATCTGAATGCTACATCATAGGCAGAAAAAAATGTCCACA
GCAAGCAACCATCCTTGTGTAGCCAAAGATTTCGTTTATGTAGTATTTGT
TTTGAGCCAGATAATTTCTTAATAATAGGGAGTGTATGTTGCAGGTTCAA
ATCCCACCATCTCCCAAATTCTTCTTGTAGAAGGGTTTGATGTTCAATAG
GGGCTTTCCAGTCTCAATCCCTGGTCAGCACCTGATTGAAGCCTTCAAAG
TGGCGCATTTCTCTCATTTATGTATGGTTTTTTAGAGGGGATTGTTGCCT
AGGGCACTCTCGCTAGCTTCTCTCTTCCCTTTCATTATGCTTATCTGCAC
CTTGCTCTGCCTCTGGGCCCTTACCTTTTAAATCCCGTCCACTTGGGGAT
GTCTCCTTTACCCTGCATAACTCACTATCATTAGGCTTTGGCGGGTAGGT
GTCCCCTCCTTTCTTCTCTTCTCATTGATGCCTGCCCTCAGCTGAACGGA
CTGTTCCTGGAACGACTTGCTGGGGGTTGCCCAGCCCTGACCCGTCTCAG
TGCAAACAATTGTACAGGTGGGTTTGCCGTTTTATAGCCACCTGTTGGTC
CTTGGAACATCAATAGCTTCATAGTAGATGATGTCTTTCTATGACACACC
CTTCCCTGTGTGACTTGTGTTGCTATGCAACTCTTGGCTGACATTGTTGC
ATATGGGGTTGTTGATGTCAGTGCATTATCTTGAGAAGTGCTGCCCAAGG
CACATCCGTGATTGTGGTCCGAAACCTCACATTGACCATCCACAAGTCTA
CTACTACTATTCCATTTTAAGTTGGGTGTTGGGTGTGAGGCAGAGCCGAT
CCAATACTCCAATAGTTTGCTACTCGCATGGATTCAGAATAGAACATTGT
GTTGGGTGCATATTTTCATACATAACATACGCCTGATTGCATACCTAATC
CAGTAGAACGTTTTGATGCATAGTGCCCTTCGCTATGTAGCTATGCTCCC
TGTATGGTGGAGGTCTCTCTTGAACTGGTTATCATAAGCAATACTGAGCA
CCAGATAAATAGACTATTAATAGCAGGATTGCTAGATTTTCATTTCACAG
CTCAGGTCTGCTTGATGCATTGAGCACTTCTGCTGTTTAAAGCATACAAG
CACCCAGGTCTCCTAGTGGTGCAATGTCTTTTACTCTATTAATATTCACT
CCTCGCTCCTGCACTTTAGAGCACATATCATCCCGACATTATAATGCAAG
GTTGCGCTCCATTACTATCAACCGTAGAGGTTGGTGATACCCAAGGCATC
GTGAGGTGCTCTGTCTGCAAGACCATCCAATATGGTGGGCCTGTACTAGT
TCATGGTCTTTCATGGCAGGATCGATTTTGCTTGGATTTAGAAAGCCATG
CCAAGGTTTATCTGTTTCTAAGTAAGAAGGAATTGACTTGAGTGGATAAT
TCTTGAGAGCTATTCCCTACGCATCTTCACCATGCTCATTTTTGGTCTGG
TGCCTTGATATCTTGCTGGATCTGAGGATGATGGTGCTGATAATTTTATT
GTATGTGCTTGCTTGCCTCCATTATGTGATCATTGAGGGATTTTGAAAGG
GTCTATGATTATGAAGGGTCCCTGTCATTGCTCCTTATCTGAGCTGCGCT
TTCCTCCTGCTCATATCACAGGCGATAGCCTTTACTACTTTTTTCAAGAG
GAGCTCTGCCTATTGGAGGAGATTGTGTGCATGCTTGACTTGTACTCTTG
TTGTTTAGGTTATCTAGCTTGACGACATTTTTCCTTCAGAGACTTGTCAG
GGGTTGATTTAGTTGAAGATGGTGGCCAATGACCAATTCCCAACTGTTGG
TCTGTTGATCAAGTATTTATGAAGTCTTTTCACCGGTCTGAGTTCACTAG
AGATAAGGTAATGAAGCTGATTACCTTTGTGATGCGAAGGAGATGGCTAT
AGCTGACACAAGGACAGTGGACAGGGACTAATTTTCCCCCATTAGACTCA
TTCTGAGGCTCTGAAGGAGCATGTAAAAGAGGTCATATGGTAGAGAGATG
AAGAGTACTGCCGCTGGTAGACTCCTTGAGAGAGTCAGGAACAAAATGAT
GGCGAGGGTGAGCCTTCAGTGTTGGTGCCTCATGCTGACCTCTCTTTCTT
GTGGAAAAAGGGTATAATTGGAGGTCAGCAGGAATTTATCTTGGAAATGA
GTCTCATTCTACATGGAAGGGGATGATGTACTAGATATTGGACCTTGGAC
CAGTACTAGTTTATCAGCATGGACCGGGTTTACAGCTCAAGCGCCTTGTT
GTGCCTGTCAAATCAATTCAACCTCTGATGATGGGATTGACTGGATGTTA
TCTCGTGCTCCTGGAAGTACTTGCTCTTGTTTTCAGTATGATTGTAGTGT
TGGGGGTAGAGTAAGAAGTATCTATAGGGTTGCACTGTTGAGAGTGCTGG
ATTAGCTCAGAAGATCTTTCAAAGTACAGGAAGCAGGTGTGAGTTGTAAT
AGGTGTAAATCTAGCTCTATCTTCCTCTTTTGTTTTGGTTTTTTGGTTGT
TCACTGTTGCTCATATTAACCAGCTGAAGAGAGGTTCGACATCACATAGG
GAACAGACCTTCATTCCATAGAACCTTTGCTTCAAATCGTTATGGATTGA
GTTTTGGACTGGAAACTTTGAAAAGGTGAACATTACACATACTCGGGAGT
ATCAGTGAGTATCTGGTATTTGATGGATGTCATGAGTGAAGTATCAGGGA
ATGGAAGGGAAGGACTCTACTCTCCGCCCTAAACCTGCAGCAGCTCATCC
CTCTTGTGAAAGTGGTATTAGAACAGACTCTCACCGCCTGCTGCAGTCAC
ACACACCCCTGCTTGGGTCCACATAACTGAGCGGTATTGAACATTCATAT
CTTGTGCACTGAACATGTGATATCCAGTCAGAAATCAAATTCATGTTGGG
TGGTGTTTATATTGTACAGATCTGTTTTCAATGCAATTCCTGATATTACC
AGGTCAATTGAACTTCTGTTGATCTCTTGTAGTGGTGTATGCCCCTTTCC
CCCCTTATCCCTATCTTTGATCCTATGCTTGCCCTGCACCGATGGTTTCC
CATGCTTTTGCCCTCTGAATGATGGTGGCAATTCGTCGTGCAAGTAAGGT
CTTGATGATATCGTCCTGCACAACTACATCATGGAGAGTGGAGCCTTCAA
GGCGGGCAGCCTGACCTGCCTTGAGCTGGCAGGATGTGCAGTTGGAACCC
TCTCCATACAGG
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Coding sequence (CDS) from alignment at C-tenellus_contig930:386..7197-

>mRNA_C-tenellus_contig930.1.1 ID=mRNA_C-tenellus_contig930.1.1|Name=mRNA_C-tenellus_contig930.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=378bp|location=Sequence derived from alignment at C-tenellus_contig930:386..7197- (Choristocarpus tenellus KU2346)
ATGATCCCTCAGTTCGGGGAGAACGAAGGATGCCTTTCGAATCTGGTCTT
GAGTAAGGTGTGTTGGTGCCTTGCCTCCCCTGATCCAGCTGTCATAAATG
CCCTTTTGTCGCGTTGGAGGGTGGGCTCGCGCTCAGCGACAGGCCGGCAC
TCGTTGAAGGCACAACCGACGAAAGACATCATTCCGTCAGCCCTGGGAGA
AATGATTTTGCAATGGGCTAAGCGGACAAATTGCTTGACAGACAACGCGG
TTCTTGAGCTGCTGCGGTGGTGCGAAGTGCACTCTTTGGATCTTTCCAAG
GCGCCCCCTACCGTCACTGACGCCCTGCTCGTCAGTATCCTAACTCTGCC
TGCTCTAGACTGGAGGAAGTTTGGCTAG
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