mRNA_C-tenellus_contig929.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig929.2.1
Unique NamemRNA_C-tenellus_contig929.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig929.2.1 vs. uniprot
Match: A0A7Z9UFE8_9BACT (Big_5 domain-containing protein n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A7Z9UFE8_9BACT)

HSP 1 Score: 53.9 bits (128), Expect = 4.260e-7
Identity = 22/34 (64.71%), Postives = 25/34 (73.53%), Query Frame = 1 
Query:   19 QCWGINTYGTLGIGSPENHGDESGEMGDNLPVVS 120
            +CWG N  G LGIG  EN GD S EMGDNLP++S
Sbjct:  627 KCWGSNISGELGIGDTENRGDNSSEMGDNLPIIS 660
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BLAST of mRNA_C-tenellus_contig929.2.1 vs. uniprot
Match: A0A383C970_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A383C970_9ZZZZ)

HSP 1 Score: 50.8 bits (120), Expect = 1.200e-6
Identity = 22/34 (64.71%), Postives = 25/34 (73.53%), Query Frame = 1 
Query:   19 QCWGINTYGTLGIGSPENHGDESGEMGDNLPVVS 120
            +CWG N  G LGIGS  + GD S EMGDNLPVV+
Sbjct:   33 KCWGYNLRGQLGIGSTNHMGDNSSEMGDNLPVVN 66
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BLAST of mRNA_C-tenellus_contig929.2.1 vs. uniprot
Match: A0A812SWJ0_9DINO (Herc4 protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812SWJ0_9DINO)

HSP 1 Score: 52.0 bits (123), Expect = 2.040e-6
Identity = 20/34 (58.82%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:   19 QCWGINTYGTLGIGSPENHGDESGEMGDNLPVVS 120
            +CWG N+YG LG+G+ +N GD S EMGD+LP+V+
Sbjct:  218 KCWGSNSYGVLGLGTTDNMGDGSNEMGDHLPLVA 251
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BLAST of mRNA_C-tenellus_contig929.2.1 vs. uniprot
Match: A0A017SY21_9DELT (Uncharacterized protein n=2 Tax=Chondromyces apiculatus TaxID=51 RepID=A0A017SY21_9DELT)

HSP 1 Score: 50.1 bits (118), Expect = 9.790e-6
Identity = 19/34 (55.88%), Postives = 25/34 (73.53%), Query Frame = 1 
Query:   19 QCWGINTYGTLGIGSPENHGDESGEMGDNLPVVS 120
            +CWG NTYG LG+GSP + G    +MG+NLP V+
Sbjct:  466 KCWGYNTYGQLGLGSPASRGTSPSDMGNNLPAVN 499
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BLAST of mRNA_C-tenellus_contig929.2.1 vs. uniprot
Match: A0A812ZCI8_9DINO (Rcbtb1 protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812ZCI8_9DINO)

HSP 1 Score: 50.1 bits (118), Expect = 9.810e-6
Identity = 20/35 (57.14%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:   16 SQCWGINTYGTLGIGSPENHGDESGEMGDNLPVVS 120
            ++CWG N  G LG+G+ +N GD S EMGD+LPVV+
Sbjct:   40 AKCWGYNNIGQLGLGTTDNMGDGSNEMGDHLPVVA 74
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BLAST of mRNA_C-tenellus_contig929.2.1 vs. uniprot
Match: A0A327H5M8_9EURY (Uncharacterized protein (Fragment) n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A327H5M8_9EURY)

HSP 1 Score: 50.1 bits (118), Expect = 9.840e-6
Identity = 22/33 (66.67%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:   19 QCWGINTYGTLGIGSPENHGDESGEMGDNLPVV 117
            +CWG NT G LGIG+ E+ GDES EMG+NLP V
Sbjct:   75 KCWGNNTAGQLGIGNIEDMGDESDEMGENLPYV 107
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BLAST of mRNA_C-tenellus_contig929.2.1 vs. uniprot
Match: A0A7J4NNU8_9ARCH (Uncharacterized protein (Fragment) n=2 Tax=Candidatus Poseidoniales TaxID=133814 RepID=A0A7J4NNU8_9ARCH)

HSP 1 Score: 50.1 bits (118), Expect = 9.840e-6
Identity = 22/33 (66.67%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:   19 QCWGINTYGTLGIGSPENHGDESGEMGDNLPVV 117
            +CWG NT G LGIG+ E+ GDES EMG+NLP V
Sbjct:   75 KCWGNNTAGQLGIGNIEDMGDESDEMGENLPYV 107
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BLAST of mRNA_C-tenellus_contig929.2.1 vs. uniprot
Match: A0A812N2T7_9DINO (HERC4 protein n=4 Tax=Symbiodinium TaxID=2949 RepID=A0A812N2T7_9DINO)

HSP 1 Score: 49.7 bits (117), Expect = 1.340e-5
Identity = 19/34 (55.88%), Postives = 27/34 (79.41%), Query Frame = 1 
Query:   19 QCWGINTYGTLGIGSPENHGDESGEMGDNLPVVS 120
            +CWG NT+G LG+G+ ++ GD S EMGD+LP V+
Sbjct:  219 KCWGRNTHGQLGLGTTDDRGDASSEMGDHLPAVA 252
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BLAST of mRNA_C-tenellus_contig929.2.1 vs. uniprot
Match: A0A2E5XPV8_9EURY (Uncharacterized protein (Fragment) n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2E5XPV8_9EURY)

HSP 1 Score: 49.3 bits (116), Expect = 1.840e-5
Identity = 21/39 (53.85%), Postives = 27/39 (69.23%), Query Frame = 1 
Query:   19 QCWGINTYGTLGIGSPENHGDESGEMGDNLPVVSCHRVL 135
            +CWGI   G LGIG+ ++ GDE+GEMG+NLP V     L
Sbjct:  103 KCWGIGDKGQLGIGNTQDIGDETGEMGENLPFVDTGNGL 141
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BLAST of mRNA_C-tenellus_contig929.2.1 vs. uniprot
Match: A0A2E4JBR4_9EURY (Uncharacterized protein n=2 Tax=cellular organisms TaxID=131567 RepID=A0A2E4JBR4_9EURY)

HSP 1 Score: 49.3 bits (116), Expect = 1.840e-5
Identity = 21/39 (53.85%), Postives = 27/39 (69.23%), Query Frame = 1 
Query:   19 QCWGINTYGTLGIGSPENHGDESGEMGDNLPVVSCHRVL 135
            +CWGI   G LGIG+ ++ GDE+GEMG+NLP V     L
Sbjct:   96 KCWGIGDKGQLGIGNTQDIGDETGEMGENLPFVDTGNGL 134
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig929.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A7Z9UFE8_9BACT4.260e-764.71Big_5 domain-containing protein n=1 Tax=Candidatus... [more]
A0A383C970_9ZZZZ1.200e-664.71Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A812SWJ0_9DINO2.040e-658.82Herc4 protein n=1 Tax=Symbiodinium necroappetens T... [more]
A0A017SY21_9DELT9.790e-655.88Uncharacterized protein n=2 Tax=Chondromyces apicu... [more]
A0A812ZCI8_9DINO9.810e-657.14Rcbtb1 protein n=1 Tax=Symbiodinium sp. CCMP2456 T... [more]
A0A327H5M8_9EURY9.840e-666.67Uncharacterized protein (Fragment) n=1 Tax=Euryarc... [more]
A0A7J4NNU8_9ARCH9.840e-666.67Uncharacterized protein (Fragment) n=2 Tax=Candida... [more]
A0A812N2T7_9DINO1.340e-555.88HERC4 protein n=4 Tax=Symbiodinium TaxID=2949 RepI... [more]
A0A2E5XPV8_9EURY1.840e-553.85Uncharacterized protein (Fragment) n=1 Tax=Euryarc... [more]
A0A2E4JBR4_9EURY1.840e-553.85Uncharacterized protein n=2 Tax=cellular organisms... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig929contigC-tenellus_contig929:6258..6404 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FS37
PFAMsRCC1,RCC1_2
Model size147
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.17e-06
EggNOG OGsCOG5021@1|root,KOG0941@2759|Eukaryota
Descriptionubiquitin-protein transferase activity
Cds size147
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790168.4162083-CDS-C-tenellus_contig929:6257..64041680790168.4162083-CDS-C-tenellus_contig929:6257..6404Choristocarpus tenellus KU2346CDSC-tenellus_contig929 6258..6404 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig929.2.1prot_C-tenellus_contig929.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig929 6258..6404 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig929.2.1

>prot_C-tenellus_contig929.2.1 ID=prot_C-tenellus_contig929.2.1|Name=mRNA_C-tenellus_contig929.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=49bp
MLSFISQCWGINTYGTLGIGSPENHGDESGEMGDNLPVVSCHRVLCWA*
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mRNA from alignment at C-tenellus_contig929:6258..6404+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig929.2.1 ID=mRNA_C-tenellus_contig929.2.1|Name=mRNA_C-tenellus_contig929.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=147bp|location=Sequence derived from alignment at C-tenellus_contig929:6258..6404+ (Choristocarpus tenellus KU2346)
ATGTTGTCCTTTATCTCTCAGTGCTGGGGTATCAATACCTATGGGACCCT
TGGAATTGGCAGTCCGGAGAACCATGGCGATGAAAGCGGGGAGATGGGGG
ACAACTTGCCTGTTGTGAGTTGCCACCGTGTGCTATGTTGGGCTTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig929:6258..6404+

>mRNA_C-tenellus_contig929.2.1 ID=mRNA_C-tenellus_contig929.2.1|Name=mRNA_C-tenellus_contig929.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=147bp|location=Sequence derived from alignment at C-tenellus_contig929:6258..6404+ (Choristocarpus tenellus KU2346)
ATGTTGTCCTTTATCTCTCAGTGCTGGGGTATCAATACCTATGGGACCCT
TGGAATTGGCAGTCCGGAGAACCATGGCGATGAAAGCGGGGAGATGGGGG
ACAACTTGCCTGTTGTGAGTTGCCACCGTGTGCTATGTTGGGCTTGA
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