mRNA_C-tenellus_contig9113.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9113.2.1
Unique NamemRNA_C-tenellus_contig9113.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9113.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9113contigC-tenellus_contig9113:4820..5217 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size399
Hectar predicted targeting categoryother localisation
Exons1
Cds size315
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790148.08357-UTR-C-tenellus_contig9113:4819..49021680790148.08357-UTR-C-tenellus_contig9113:4819..4902Choristocarpus tenellus KU2346UTRC-tenellus_contig9113 4820..4902 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790148.095671-CDS-C-tenellus_contig9113:4902..52171680790148.095671-CDS-C-tenellus_contig9113:4902..5217Choristocarpus tenellus KU2346CDSC-tenellus_contig9113 4903..5217 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9113.2.1prot_C-tenellus_contig9113.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9113 4903..5217 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9113.2.1

>prot_C-tenellus_contig9113.2.1 ID=prot_C-tenellus_contig9113.2.1|Name=mRNA_C-tenellus_contig9113.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=105bp
EQRKAGNVEVRKRGLRYEEESSHPCDLELCNHHSLSAGGLNVDPFIVAFA
FFEIGVFIVPVAVYVFQIRIWSKRKRKCFDPIVFAEIGLSMCSVFFCFSV
CCIS*
back to top

mRNA from alignment at C-tenellus_contig9113:4820..5217-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9113.2.1 ID=mRNA_C-tenellus_contig9113.2.1|Name=mRNA_C-tenellus_contig9113.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=398bp|location=Sequence derived from alignment at C-tenellus_contig9113:4820..5217- (Choristocarpus tenellus KU2346)
GAGCAGCGCAAGGCTGGGAATGTGGAGGTAAGGAAGAGAGGACTAAGATA
TGAGGAGGAGTCGAGTCATCCTTGTGACTTGGAATTATGTAATCATCACT
CACTCTCTGCTGGTGGTTTGAATGTTGATCCTTTTATTGTGGCATTCGCT
TTTTTTGAAATAGGCGTTTTTATTGTTCCAGTTGCTGTGTATGTATTTCA
GATACGGATTTGGAGTAAAAGAAAAAGAAAGTGCTTTGATCCTATTGTGT
TCGCTGAGATTGGGCTGTCAATGTGTAGTGTGTTTTTTTGTTTTAGTGTG
TGTTGTATTTCTTGAGTGGTATCTCTTCAGGGTTGTACTGCACTTTGCCG
TGAGATGGTGTTTTTTTTATCTTTTTGCTTAAGATTTTTTTCTTCTAT
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig9113:4820..5217-

>mRNA_C-tenellus_contig9113.2.1 ID=mRNA_C-tenellus_contig9113.2.1|Name=mRNA_C-tenellus_contig9113.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=315bp|location=Sequence derived from alignment at C-tenellus_contig9113:4820..5217- (Choristocarpus tenellus KU2346)
GAGCAGCGCAAGGCTGGGAATGTGGAGGTAAGGAAGAGAGGACTAAGATA
TGAGGAGGAGTCGAGTCATCCTTGTGACTTGGAATTATGTAATCATCACT
CACTCTCTGCTGGTGGTTTGAATGTTGATCCTTTTATTGTGGCATTCGCT
TTTTTTGAAATAGGCGTTTTTATTGTTCCAGTTGCTGTGTATGTATTTCA
GATACGGATTTGGAGTAAAAGAAAAAGAAAGTGCTTTGATCCTATTGTGT
TCGCTGAGATTGGGCTGTCAATGTGTAGTGTGTTTTTTTGTTTTAGTGTG
TGTTGTATTTCTTGA
back to top