mRNA_C-tenellus_contig9086.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9086.2.1
Unique NamemRNA_C-tenellus_contig9086.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig9086.2.1 vs. uniprot
Match: A0A6H5KG47_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KG47_9PHAE)

HSP 1 Score: 298 bits (762), Expect = 4.150e-87
Identity = 149/227 (65.64%), Postives = 174/227 (76.65%), Query Frame = 3
Query:  696 MDKLSKSDPFVVVKIKTDVDPEWLELGRTEIVSNTQDPFFTTQLSAMFLFEEVQHLRFEVYDADCVYKSNASSAVLILAKQDFQGSAETTVASVLGSVDQTLGLKLDRPRGKGSTAEVFVRMEEVAHQHDLVTLKLRAAKVDKKDLTSSDPFLRISRALERGEWVSIFKTEVKNRTLNPVWRPIQGSVQRLVNGDLYRPLRFDCWDYDLGGGHDFIGSCEASIIDLQ 1376
            MDKLSKSDPFVV+K KTD D  W E+GRTEI+SN Q+P FT Q S  +LFEEVQ +R EVYD D  +K+N ++ V  L +QDFQG AETT+A VLGS  QT  L L +  G+   A V +RM+EV HQHDLVTLKLRA  VDKKDLTSSDP+L+I+R LE GE   IFKTEV++RTLNPVWR IQG+VQ+L NGDL RPLR +CWDYD  GGHDFIG C ASI D+Q
Sbjct:   57 MDKLSKSDPFVVIKWKTDSDETWREIGRTEIISNDQNPNFTAQFSLTYLFEEVQGVRLEVYDVDTAFKTNDATNV-DLGRQDFQGFAETTMAEVLGSSGQTSTLPLMKNTGRAGQAVVSIRMDEVEHQHDLVTLKLRALNVDKKDLTSSDPYLKIARVLETGEQTYIFKTEVQSRTLNPVWREIQGTVQQLANGDLLRPLRVECWDYDRAGGHDFIGGCSASIADMQ 282          
BLAST of mRNA_C-tenellus_contig9086.2.1 vs. uniprot
Match: D7FXN1_ECTSI (Copine n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXN1_ECTSI)

HSP 1 Score: 182 bits (462), Expect = 2.250e-45
Identity = 114/253 (45.06%), Postives = 150/253 (59.29%), Query Frame = 3
Query:  663 VHTQ---LYTRCRV---------MDKLSKSDPFVVVKIKTDVDP-EWLELGRTEIVSNTQDPFFTTQLSAMFLFEEVQHLRFEVYDADCVYKSNASSAVLI-LAKQDFQGSAETTVASVLGSVDQTL-GLKLDRPRGKGSTAEVFVRMEEVAHQHDLVTLKLRAAKVDKKDLTSSDPFLRISRALERGEWVSIFKTEVKNRTLNPVWRPIQGSVQRLVNGDLYRPLRFDCWDYDLGGGHDFIGSCEASIIDLQ 1376
            +HT+   LYTR ++         MD  SKSDPFV+VK+ +  D  E  E+GRTEI+SN+ DP F T +   F FEEVQ LRFEVYD D  Y S  S A LI  +KQDFQG+AE  +A V+G  DQT  GL      GKG + +V VR EEVA+ + L  + L  + + K       PFLR+SR  E+G  +  FKTEV   +    W PI+ S++ L NGD YRPL  + + +   G H  +GSC+AS+ DL+
Sbjct:    3 MHTRPDPLYTRLQLSISCKGLVNMDTFSKSDPFVLVKLHSPSDSNESKEIGRTEIISNSLDPNFVTIVPVTFKFEEVQTLRFEVYDVDTAYSS--SDATLIDPSKQDFQGAAECVLAQVIGGRDQTWEGLLSGAKTGKGGSPKVVVRAEEVANSNGLAEITLAGSNIGK------GPFLRVSRVSEKGPPIRCFKTEVAKGSPPRPWAPIEISLKVLANGDPYRPLIIEAFTWKKSGNHALLGSCKASVNDLK 247          
BLAST of mRNA_C-tenellus_contig9086.2.1 vs. uniprot
Match: A0A6H5L3T5_9PHAE (C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3T5_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 7.940e-43
Identity = 111/259 (42.86%), Postives = 150/259 (57.92%), Query Frame = 3
Query:  624 NSSTQLLSLLPQDVHTQLYTRCRV---MDKLSKSDPFVVVKIKTDVDP-EWLELGRTEIVSNTQDPFFTTQLSAMFLFEEVQHLRFEVYDADCVYKSNASSAVLILAKQDFQGSAETTVASVLGSVDQTL-GLKLDRPRGKGSTAEVFVRMEEVAHQHDLVTLKLRAAKVDKKDLTSSDPFLRISRALERGEWVSIFKTEVKNRTLNPVWRPIQGSVQRLVNGDLYRPLRFDCWDYD---LGGGHDFIGSCEASIIDLQ 1376
            ++++ L    P     QL   C+    MD  S SDPFV+VKI +  D  E  E+GRTEI+SN+ DP F T +   F FEEVQ LRFEVYD D  Y S+ ++ +   +KQDFQG+AE  +A V+G  DQT  GL     RGKG + +V VR EEVA+   L  + L  + + K       PFLR+SR  E+G  +  FKTEV   +    W PI+ S+Q L NGD YRPL  + + +    L G H  +GSC+AS+ D++
Sbjct:   33 DAASMLSESAPLYTRLQLSISCKGLVNMDAFSNSDPFVLVKIHSPSDSNESKEIGRTEIISNSLDPKFVTIVPVTFKFEEVQTLRFEVYDVDTAYSSSDATHI-DPSKQDFQGAAECALAQVVGGRDQTWEGLLSGAKRGKGGSPKVVVRAEEVANCDGLAQITLAGSNIGKW------PFLRVSRVSEKGPPIRCFKTEVAKGSPPRPWAPIKISLQVLANGDPYRPLLIEAFTWKKRVLSGNHVLLGSCKASVNDIK 284          
BLAST of mRNA_C-tenellus_contig9086.2.1 vs. uniprot
Match: A0A6H5LMQ8_9PHAE (C2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LMQ8_9PHAE)

HSP 1 Score: 173 bits (439), Expect = 5.970e-42
Identity = 109/259 (42.08%), Postives = 153/259 (59.07%), Query Frame = 3
Query:  624 NSSTQLLSLLPQDVHTQLYTRCRVM---DKLSKSDPFVVVKIKTDVDP-EWLELGRTEIVSNTQDPFFTTQLSAMFLFEEVQHLRFEVYDADCVYKSNASSAVLILAKQDFQGSAETTVASVLGSVDQTL-GLKLDRPRGKGSTAEVFVRMEEVAHQHDLVTLKLRAAKVDKKDLTSSDPFLRISRALERGEWVSIFKTEVKNRTLNPVWRPIQGSVQRLVNGDLYRPLRFDCWDYD---LGGGHDFIGSCEASIIDLQ 1376
            ++++ L +  P     QL   C+ +   D+LSKSDPFV+VK+ +  D  E  E+GRTEI++N+ DP F T +   F FEEVQ LRFEVYD D  Y S+ ++ +   +KQDFQG+AE  +A V+G  DQT  GL     RGKG + +V VR EEVA+ + L  + L  + +          FLRISR  E+G  +  FKTEV   +    W PI+ S+Q L NGD YRPL  + + +    L G H  +GSC+AS+ D++
Sbjct:   29 DAASMLSASGPLYTRLQLSISCKQLVNLDQLSKSDPFVLVKLHSPSDGNESKEIGRTEIITNSLDPKFVTIVPVTFKFEEVQTLRFEVYDVDTAYSSSDATHI-DPSKQDFQGAAECALAQVVGGRDQTWEGLLSGARRGKGDSPKVVVRAEEVANSNALAEITLAGSNI------GHGSFLRISRLSEQGPPIPCFKTEVAKGSPPRPWAPIKISLQVLANGDPYRPLLIEAFTWKKRVLSGNHVLLGSCKASVNDIK 280          
BLAST of mRNA_C-tenellus_contig9086.2.1 vs. uniprot
Match: F2U8H3_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U8H3_SALR5)

HSP 1 Score: 167 bits (424), Expect = 1.620e-40
Identity = 98/241 (40.66%), Postives = 134/241 (55.60%), Query Frame = 3
Query:  666 HTQLYTRCRVM---DKLSKSDPFVVVKIKTDVDPEWLELGRTEIVSNTQDPFFTTQLSAMFLFEEVQHLRFEVYDADCVYKSNASSAVLILAKQDFQGSAETTVASVLGSVDQTLGLKLDRPRGKGSTAEVFVRMEEVAHQHDLVTLKLRAAKVDKKDLTS-SDPFLRISRALERGEWVSIFKTEVKNRTLNPVWRPIQGSVQRLVNGDLYRPLRFDCWDYDLGGGHDFIGSCEASIIDLQ 1376
            H QL+ +C  +   D LSKSDPFVV+    + +  ++E GRTE +SN  +P F T     + FE  Q LRF+VYD D    S        L  QDF G  +TT+ S++G     L   L    GK +   + V  EE A    +V  ++RA KVDKKDL   SDP++ ISR L  G W ++ KTEV   TLNP+W P +  + RL NG+    L+F+ +D+D  G HDFIGS E ++  +Q
Sbjct:    9 HLQLHVQCSKLPRKDTLSKSDPFVVIYTFDERNNAFVEYGRTETLSNNHNPDFATGFDLSYFFETTQKLRFDVYDEDTKGGS--------LQAQDFIGRIDTTLGSIMGEYHGRLTAPLLSKSGKKTKGVITVLAEEAAKSAGVVKFRMRATKVDKKDLFGKSDPYVVISRNLS-GSWATVHKTEVVRNTLNPLWAPFEVDLTRLCNGNPETALKFEVFDWDRVGSHDFIGSFETTLAAIQ 240          
BLAST of mRNA_C-tenellus_contig9086.2.1 vs. uniprot
Match: A0A6S7I5X7_PARCT (Copine-3-like isoform X1 n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7I5X7_PARCT)

HSP 1 Score: 156 bits (395), Expect = 1.100e-38
Identity = 90/227 (39.65%), Postives = 127/227 (55.95%), Query Frame = 3
Query:  699 DKLSKSDPFVVVKIKTDVDPEWLELGRTEIVSNTQDPFFTTQLSAMFLFEEVQHLRFEVYDADCVYKSNASSAVLILAKQDFQGSAETTVASVLGSVDQTLGLKLDRPRGKGSTAEVFVRMEEVAHQHDLVTLKLRAAKVDKKDLTS-SDPFLRISRALERGEWVSIFKTEVKNRTLNPVWRPIQGSVQRLVNGDLYRPLRFDCWDYDLGGGHDFIGSCEASIIDLQ 1376
            D LSKSDP  VV I +    +W+E+GRTE + +  +P F   ++  + FEE+Q L+F VYD D             L K DF G  E T+  ++ S   +  L+L    G G+   + +  EE+A  HDLV    RA+K+DKKD    SDP+L  SRA E G +V   +TEV   TLNP W+P + SV  L N DL R ++ DC+D+D  G HDFIG    ++ +++
Sbjct:   37 DVLSKSDPMAVVCIFSG--NQWVEVGRTEQIKDNLNPNFAQSVTVDYHFEELQKLKFSVYDID--------DPKADLRKADFLGELECTLGQLVSSQKYSKPLQLP---GTGNAGTISITAEELATNHDLVDFTFRASKLDKKDFFGKSDPYLEFSRAKEDGSFVVFHRTEVIKNTLNPSWKPFRLSVVDLCNADLNRTIKVDCYDWDSDGSHDFIGQFTTNLNEME 250          
BLAST of mRNA_C-tenellus_contig9086.2.1 vs. uniprot
Match: UPI00106B72FF (copine-8-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106B72FF)

HSP 1 Score: 160 bits (406), Expect = 3.840e-38
Identity = 94/255 (36.86%), Postives = 139/255 (54.51%), Query Frame = 3
Query:  624 NSSTQLLSLLPQDVHTQLYTRCRV---MDKLSKSDPFVVVKIKTDVDPEWLELGRTEIVSNTQDPFFTTQLSAMFLFEEVQHLRFEVYDADCVYKSNASSAVLILAKQDFQGSAETTVASVLGSVDQTLGLKLDRPRGKGSTAEVFVRMEEVAHQHDLVTLKLRAAKVDKKDLTS-SDPFLRISRALERGEWVSIFKTEVKNRTLNPVWRPIQGSVQRLVNGDLYRPLRFDCWDYDLGGGHDFIGSCEASIIDLQ 1376
            +SS+++ + +P     ++  +C     MD  SKSDP VV+ IK     EW E GRTE + NT +P F  +    + FEE+QHLRF+VYD D    S+AS     L+  DF G  +TT+ S++G        KL+  +       + + +EEV+   D+VTL  +A K+DKKD    SDPFL   R  E   + ++ +TEV   TLNP W+      + L NGD  R +  +C+D+D  GGHDFIG    ++ ++ 
Sbjct:   20 SSSSRIQNAIPA-TQVEISVKCTNLADMDVFSKSDPIVVLFIKATDGSEWREFGRTEKIMNTLNPIFVKKFVMDYFFEEIQHLRFQVYDVD---SSSAS-----LSDHDFIGRLDTTLGSIIGEHGGHFESKLEN-KEMPKCGSIILTVEEVSDCRDVVTLHFKANKLDKKDFFGKSDPFLVFYRCNEDSSFTAVHRTEVIKNTLNPTWKAFSVLSRALCNGDYDRSILVECYDWDRNGGHDFIGQFSTTLREMN 264          
BLAST of mRNA_C-tenellus_contig9086.2.1 vs. uniprot
Match: A0A3M6V0C5_POCDA (Uncharacterized protein n=2 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6V0C5_POCDA)

HSP 1 Score: 160 bits (404), Expect = 5.240e-38
Identity = 95/239 (39.75%), Postives = 132/239 (55.23%), Query Frame = 3
Query:  672 QLYTRCRV---MDKLSKSDPFVVVKIKTDVDPEWLELGRTEIVSNTQDPFFTTQLSAMFLFEEVQHLRFEVYDADCVYKSNASSAVLILAKQDFQGSAETTVASVLGSVDQTLGLKLDRPRGKGSTAEVFVRMEEVAHQHDLVTLKLRAAKVDKKDLTS-SDPFLRISRALERGEWVSIFKTEVKNRTLNPVWRPIQGSVQRLVNGDLYRPLRFDCWDYDLGGGHDFIGSCEASIIDLQ 1376
            +L+  CR    MD  SKSDP VV+  +     EW E GRTE + NT +P F    +  + FEE+Q LRFEVYD D   K++A      L+  DF G+AE T+ S++G     L  +L  P+ K     + V  EE++   D+VTL+ +  K+DKKD    SDPFL   R  E   + ++ +TEV   TLNP W+P     + L NGD  R +R +C+D+D  GGHD IG    +I +L 
Sbjct:   31 ELHISCRNLADMDVFSKSDPMVVMYTQGMGSKEWREFGRTEHIMNTLNPDFVKTFTIHYFFEEMQKLRFEVYDLD---KNSAK-----LSDHDFIGAAECTLGSIVGEFGGRLQKQLVNPKLK-KPGTIIVSAEELSDCKDVVTLQFKGHKLDKKDFFGKSDPFLVFYRCNEDNSYTAVHRTEVIKNTLNPTWKPFTIHARALCNGDYDRSIRVECYDWDRDGGHDLIGIFSTTINELN 260          
BLAST of mRNA_C-tenellus_contig9086.2.1 vs. uniprot
Match: D8T435_SELML (Uncharacterized protein n=6 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8T435_SELML)

HSP 1 Score: 159 bits (403), Expect = 1.050e-37
Identity = 95/253 (37.55%), Postives = 144/253 (56.92%), Query Frame = 3
Query:  651 LPQDVHTQLY---TRCRVMDKLSKSDPFVVVKIKTDVDPEWLELGRTEIVSNTQDPFFTTQLSAMFLFEEVQHLRFEVYDADCVYKSNASSAVLILAKQDFQGSAETTVASVLGSVDQTLGLKLDRP-------RGKGSTAEVFVRMEEVAHQHDLVTLKLRAAKVDKKDLTS-SDPFLRISRALERGEWVSIFKTEVKNRTLNPVWRPIQGSVQRLVNGDLYRPLRFDCWDYDLGGGHDFIGSCEASIIDLQ 1376
            +P DV  QL+   ++ R  D LSKSDP  V  I+ D   E  E+GRTE+VSNT +P + T +   + F+++Q L F VYD D  Y +  +   L L +QDF G     +A V+ +  Q+    L           G  S   + ++ EE+ H   +V L LR + ++ KD  S SDPFLR+SR  E G  V ++K+EVK   L+P W+ ++ ++Q+L NG++ RPL  +C++Y+  G HD IGS + S+ +LQ
Sbjct:   42 VPADVQVQLWISASKLRDKDFLSKSDPLAVAFIRKDGVLE--EVGRTEVVSNTLNPSWVTDIKVSYSFQDIQQLLFRVYDIDTKY-AGVNPQELPLEEQDFLGEMTCLLAEVVAAPGQSFSRLLQDKVDGGTDKTGVKSMGTLTIKAEEMQHSKSIVELVLRCSDLNNKDFFSKSDPFLRLSRLREDGSSVPVYKSEVKKNNLHPTWKLVRTTLQQLNNGNMDRPLVVECFNYNGNGRHDLIGSTQVSLNELQ 291          
BLAST of mRNA_C-tenellus_contig9086.2.1 vs. uniprot
Match: UPI001F03D920 (copine-9-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F03D920)

HSP 1 Score: 159 bits (402), Expect = 1.200e-37
Identity = 92/255 (36.08%), Postives = 139/255 (54.51%), Query Frame = 3
Query:  624 NSSTQLLSLLPQDVHTQLYTRCRV---MDKLSKSDPFVVVKIKTDVDPEWLELGRTEIVSNTQDPFFTTQLSAMFLFEEVQHLRFEVYDADCVYKSNASSAVLILAKQDFQGSAETTVASVLGSVDQTLGLKLDRPRGKGSTAEVFVRMEEVAHQHDLVTLKLRAAKVDKKD-LTSSDPFLRISRALERGEWVSIFKTEVKNRTLNPVWRPIQGSVQRLVNGDLYRPLRFDCWDYDLGGGHDFIGSCEASIIDLQ 1376
            +SS  + + +P     ++  +C+    MD  SKSDP VV+ +K+    EW E GRTE++ NT +P F  +    + FEE+Q LRF VYD D    SN+      L+  DF G  + T+ S++G     L  KL+  +       + + +EEV+   D+ TL  +A K+DKKD L  SDPFL   R  E   + ++ +TEV   TLNP+W+P     + L NGD  R +  +C+D+D  GGHDFIG    ++ ++ 
Sbjct:   20 SSSIHIQNAVPA-TQVEISVKCKNLADMDLFSKSDPVVVLFVKSVDGREWREFGRTEVIMNTLNPVFVKKFIMNYFFEEIQELRFHVYDVD----SNSPR----LSDHDFIGRLDITLGSIIGEHGGRLEAKLEN-KETSKCGSIILTVEEVSECKDVATLHFKANKLDKKDFLGKSDPFLVFYRCNEDSSFTAVHRTEVIKNTLNPMWKPFSVPGRALCNGDYDRSILVECYDWDRDGGHDFIGHFSTTLREMN 264          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9086.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KG47_9PHAE4.150e-8765.64Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FXN1_ECTSI2.250e-4545.06Copine n=1 Tax=Ectocarpus siliculosus TaxID=2880 R... [more]
A0A6H5L3T5_9PHAE7.940e-4342.86C2 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A6H5LMQ8_9PHAE5.970e-4242.08C2 domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
F2U8H3_SALR51.620e-4040.66Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
A0A6S7I5X7_PARCT1.100e-3839.65Copine-3-like isoform X1 n=3 Tax=Paramuricea clava... [more]
UPI00106B72FF3.840e-3836.86copine-8-like n=1 Tax=Dendronephthya gigantea TaxI... [more]
A0A3M6V0C5_POCDA5.240e-3839.75Uncharacterized protein n=2 Tax=Pocillopora damico... [more]
D8T435_SELML1.050e-3737.55Uncharacterized protein n=6 Tax=Selaginella moelle... [more]
UPI001F03D9201.200e-3736.08copine-9-like n=1 Tax=Xenia sp. Carnegie-2017 TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9086contigC-tenellus_contig9086:611..5142 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FKI8
PFAMsC2,Copine,Dev_Cell_Death
Model size2383
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0001101,GO:0003674,GO:0005488,GO:0005543,GO:0005544,GO:0005575,GO:0005623,GO:0005886,GO:0005911,GO:0008150,GO:0008289,GO:0008361,GO:0009266,GO:0009270,GO:0009415,GO:0009506,GO:0009628,GO:0009987,GO:0010035,GO:0010118,GO:0010941,GO:0016020,GO:0016043,GO:0030054,GO:0032535,GO:0042221,GO:0043167,GO:0043168,GO:0044464,GO:0045793,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0055044,GO:0060548,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0090066,GO:0090332,GO:1901700
Exons5
Evalue6.51e-95
EggNOG OGsKOG1327@1|root,KOG1327@2759|Eukaryota
Ec32 ortholog descriptionC2 domain
Ec32 orthologEc-12_001900.1
Descriptionnegative regulation of response to water deprivation
Cds size747
COG categoryU
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9086.2.1prot_C-tenellus_contig9086.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9086 1552..4447 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790146.8023918-UTR-C-tenellus_contig9086:610..15511680790146.8023918-UTR-C-tenellus_contig9086:610..1551Choristocarpus tenellus KU2346UTRC-tenellus_contig9086 611..1551 -
1680790146.8740876-UTR-C-tenellus_contig9086:4447..51421680790146.8740876-UTR-C-tenellus_contig9086:4447..5142Choristocarpus tenellus KU2346UTRC-tenellus_contig9086 4448..5142 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790146.8128169-CDS-C-tenellus_contig9086:1551..17431680790146.8128169-CDS-C-tenellus_contig9086:1551..1743Choristocarpus tenellus KU2346CDSC-tenellus_contig9086 1552..1743 -
1680790146.8240976-CDS-C-tenellus_contig9086:2194..23291680790146.8240976-CDS-C-tenellus_contig9086:2194..2329Choristocarpus tenellus KU2346CDSC-tenellus_contig9086 2195..2329 -
1680790146.8389037-CDS-C-tenellus_contig9086:3251..34181680790146.8389037-CDS-C-tenellus_contig9086:3251..3418Choristocarpus tenellus KU2346CDSC-tenellus_contig9086 3252..3418 -
1680790146.8530505-CDS-C-tenellus_contig9086:3752..39261680790146.8530505-CDS-C-tenellus_contig9086:3752..3926Choristocarpus tenellus KU2346CDSC-tenellus_contig9086 3753..3926 -
1680790146.862658-CDS-C-tenellus_contig9086:4368..44471680790146.862658-CDS-C-tenellus_contig9086:4368..4447Choristocarpus tenellus KU2346CDSC-tenellus_contig9086 4369..4447 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9086.2.1

>prot_C-tenellus_contig9086.2.1 ID=prot_C-tenellus_contig9086.2.1|Name=mRNA_C-tenellus_contig9086.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=249bp
MDKLSKSDPFVVVKIKTDVDPEWLELGRTEIVSNTQDPFFTTQLSAMFLF
EEVQHLRFEVYDADCVYKSNASSAVLILAKQDFQGSAETTVASVLGSVDQ
TLGLKLDRPRGKGSTAEVFVRMEEVAHQHDLVTLKLRAAKVDKKDLTSSD
PFLRISRALERGEWVSIFKTEVKNRTLNPVWRPIQGSVQRLVNGDLYRPL
RFDCWDYDLGGGHDFIGSCEASIIDLQVLLLLMILFVGEWGGIFGNCS*
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mRNA from alignment at C-tenellus_contig9086:611..5142-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9086.2.1 ID=mRNA_C-tenellus_contig9086.2.1|Name=mRNA_C-tenellus_contig9086.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4532bp|location=Sequence derived from alignment at C-tenellus_contig9086:611..5142- (Choristocarpus tenellus KU2346)
CGCGGAGTACGCTGCAGCAAAATTTACTGGAGGACGGGGGCTGGGGAGCA GGGTGATGATGAGCCTCTGGTGTAAGAAACTCATGTACGTTGCCATTTTA TACAGATACGTTGTTGTTCACCCCGCCAAGGGCCGCATCAGTGTCTTTCG GGTTTGAGTAGAGGGATTTTTTGGTTACATTTTGTATGTATGTTTGAATT TCCAGTGTAAGTTGAGGATTCAGATTATGTTAAGGCAAGAAGCTTATCCA AGCATCTATGACCAAATGGTGAAAAACCTTATTGTTTTCGGTAGCGCACA GCTCGTTCCGTACTACATTGCCCGTGCAAGTGTGTTTGGTGTAAGTTCAC TTGTGTCTTACAAATTGTGTTCACCCTTCTCGCTACGACGGATATTTGTG AGTAGGTTCAATCTGTTCCCCTCATGCTAGCTAGTAGCGATTTCCCCAAC AATCTAGTTCCTGCATTCCAGTTCTCTGTGTATTGACCCCTCCCCGTCAT GTACATTATCAATTAACCATTTACTTCAGGGGTATATTTCCTGTGCAACT ACCCATTTGGTTTGACGACCCAACAGTTCACTTCAGGTTCCCCTGCCATA TTACTTCATGCCACTTTCATTTTAATTCCTCAACCCAATTATTAAGCCTC CTACCCCAAGATGTTCACACACAACTGTACACTCGATGCAGAGTCATGGA CAAACTGAGCAAGTCTGATCCGTTCGTCGTGGTGAAGATAAAGACAGACG TGGATCCCGAATGGCTTGAACTGGGTGAGATTTTGGGGCCACGATCTGCC CCATTCACTGAAAGCCTTCAACCTATAGGCCAGTAGCAAAACATTTAAAT GGAGTATAATGGGAGTGGAGCAGAAAGTGCAGCGACTGCCCTCCCCACCT GACCCTTTAAATATCATCCGTGGTTGCAGCAGAAGATCCGAAAGATCCTC ATTAGTTACACTAAGAAGAGTGAAGTGTGTTCATGGTTTTGTCTAAGAAA TTAGAGAACACTGCCGACCATGTATGGGAGGGCCAACTGGTTGGTATAGT GATAGGAGATTAATTGCTGATGGTACAAGCTTGACCTCAACATCTGGTTG ATGGCTTCTTTCAGTTATATGTTATATCGTACCTCTGAAATATTACATAA TCTTGTTCCCCGTCCCCATCTCCCCCCTATCCATGCTTTCCTGCTACCCT GCAAATCTAAAACAAGGTCGGACGGAGATAGTTTCTAATACTCAGGATCC CTTTTTCACAACTCAACTGTCAGCCATGTTTCTGTTTGAGGAGGTGCAAC ACCTCAGATTTGAGGTCTATGATGCTGATTGTGTGTACAAGAGCAATGCC AGTTCCGCTGTCTTGATCCTGGCTAAACAGGACTTTCAGGGTAAGTACAG TATGTTTTTTAATTTTTTGTTTCGTTAATATTATTATTATTATTATTATT ATTATTATTATTTGTGTATAATACATGATTTATGAGTGTGACACTTGACT GTGTTAGGTCTGTAGTAGCAGCGTACGATGGTGTATCACTTCTGTCAAGA TAAGGCACAACAAAAAATTCCCATCTCAACTAACACTCTCTGCAGTTGGT CCCTTTCCCAAATCCAATTTCAGTCCAGTCCCCCTCTTCCTCCCTGGCGC CCATATTCTTCATTCAAAGGATGCTATATACTTGTATTATAATCCAAGCA TGCATTGGGTGTTTTGCGGAGTAGGTTCTGCTGAGACTACAGTGGCTAGT GTGTTGGGATCAGTGGACCAGACTTTAGGCTTGAAACTGGATCGACCGAG GGGAAAAGGCTCCACTGCAGAAGTGTTTGTTAGGATGGAGGAGGTAGCAC ATCAGCATGACCTGGTCACACTGAAGCTGCGTGCTGCGAAGGTGGGTGAG GTTTTTTAGGTGTATTGTGTTAAGTCTTCCTGCACGCCAAACAGCTGTCT GTGTGGGGTTCAGCAGTGGGGGAAGGGGAGGGAGGTAGGTGTGGCTGAAC TGAGTTGGGGGAGTATTTGTGTGTGTGTGTGTGTGTGTGTTTTTTTTTTT TTTTTTTTTTTTTTTTTTTCCTGTATGTGGGTGTATTGGGGCAACTATTT TCTCGACTGTCGTGGCTTTGTTTGAAAGAGGATTGAGTACTAATTGTATT CTTAATAGCACACTGAGCTTGATTTAAAAAAAAAATGAGATCAATTTTGT TGGTCACGATTTTTTTCACTACTCGTCTTTCGTTTACTTTTGTAAACTGT AAAAAATGCAGCAAGGGATTCTTTTTTTTTTAATATGTTGATCGATCTGC TAGCTAGGCCTGGGGCAAATCGTAAGGCAGCAAGGTAACTGCCGTGCTGT GAATCGTAGCAAGGTACGGATGCCATAGAACGTAAGAATGCTTGAGGTAA CGCTTTATGTCGAACTTGATCCAATGTATGATATTTTCTTGCCTGTGCGT GAACTCAGTGTGGGCTGAAAAAGATTTCCTCTCGCGGAGGCGTTTTGATA TTGCACATGGGTAGAAGGGTGTCTACTGTTGATACTTCTATACAACTTCG TGGCTTAGACGCTCTATTAATTCCCTGCCGTCTTCCCCCAGGTCTTGGGG CGTTTTGTATTGTACCTGAGCTCACACTCGCATGCGTAGAGTTTATCCCC TCCTTGGGTTGTGGTAATGCTTCCATCGCATATATATATATATATATATA TATATATATATACATATTTATATATGTATATATTTATATATGTATATATA TACATTTTTTTCTTTTTTTTGTTCCCTTTTGTGTACCCCCACGGCCTTTT GCGCTGAGCTCAGGTTGACAAGAAGGACTTGACTTCAAGTGATCCGTTTC TGAGAATATCCCGAGCCTTGGAGAGGGGGGAGTGGGTCAGTATCTTCAAG ACAGAGGTGAAGAACCGGACTCTCAATCCTGTTTGGAGACCGATACAGGT AGGTGATAAAGGGAGAAGCAGTACTAGCACAGCTCGTGTGGTGCTTCTAA GTACTTGACTGACTGGAAGAACTATCTTGTATGTAGTATAAATATATGTG ATACAAAATATGCAAGTAGGAGGTGTGCAGCGCTTGTATGTGTGATTTTT TATTCAGTGAAAAGTTTACTACGTGCAGGTGGTAATGCTTGCCCTCCCAT GAACTTGCTTCAGGTGTGGAATGTGCTTGGTCTGTTCTCTCCTTTTCTTG TAACATGTCAACTGCCGGACTCCTCGCCCTCTTCACCCTCCTGAATAATT GTCGTACGTATCTTTCTTGTGTATGTGTATATGTGTATGTATGTATGTAT GTATGTATGTGTGTGTGTATGTGTATATGTGTATGTGTATGTGTATGTGT ATGTATGTGCATGTATGTGTGCATTGTATTTGCACGTGCTGGAGAGCAGG GATCAGTCCAGAGGTTGGTGAACGGTGACTTATACCGGCCGCTGCGATTC GATTGCTGGGATTATGATTTAGGTGGAGGGCATGACTTCATTGGATCTTG TGAGGCATCAATTATTGACCTTCAGGTACTGTTGTTGCTGATGATTTTAT TTGTGGGAGAATGGGGGGGTATTTTTGGCAACTGTAGTTGAAAGTGCAAG CCGGCAAACGTATTGAGTGTACTTATTGGTGTACTCGGACGTTGGTGACG ATGTGCTACCTAGGTGTTAGTCTGCTCTTGTTTTTTGGATGACAAGGAAT GTATTCGGTAGTTGCTAACTTGGGAGGTGAGAGGAACTCGGGTGGACTTC ATTATCTCCTTTCCTGTAGCTCGCGGACTCTTGGTGAGTATCTCCTATGT GTTGGCACTTCAGTAGGAGTTATATTAATGATTCTGCTCTTCAGGCCCTG GGGTAGTAGTCGTTTAAAATTTGGGTGTTTGCTAGGGTTAGGGTTAGGGT TAGGGTTAGGAAGTGAGTCGCAAACTCCCTTGAGGAAGGGAGATAGGACT AATTAATTGATCTTCTGTAATTCCTACAGGGTCTTCAGGTTAGAAATGAA AATATCTCCTATTCGAATATATGAAAGTGAATAAAAACACTCCTGGGTTA AGGTCTCTTTATGATTGTCCCCACTCCGTAGGCTATGCCAAAAAATCACG AGCGTGTTACGATTGTGAGATGAAGAGATACCCCAAAATCTGCAGGATTG TGGTATAGACCAATTTGAAACTGGTCACTCCTCTGCTTCAATGCCAGCTT TCTTTGTTGGTATTGTGTTGTAACCCATAGCGCAGTGGCCCTTATCTGAA CCTGTGAAGAGTATTGTTTGCAAAATTGTTACTATGATCATGCTCAGGAT TCATACTCACCATTTCAGCAGTGTAGAACCTTTAAATTCTTGGACAGAGT TAATCCCTTTTTTATTATTAATGACAAGAGATTGCTTGTGTTCTGATATA TATATATATATTTATAATATTGATAGTTTTATACTGATTGTACAACTATG TGTTTGAGTCTGTGTTGCTGTCCTAATTCAGATTGGGGGGATTGTCAGAT TAGCATGATGTTGTAAATACCACCAATACACA
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Coding sequence (CDS) from alignment at C-tenellus_contig9086:611..5142-

>mRNA_C-tenellus_contig9086.2.1 ID=mRNA_C-tenellus_contig9086.2.1|Name=mRNA_C-tenellus_contig9086.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=747bp|location=Sequence derived from alignment at C-tenellus_contig9086:611..5142- (Choristocarpus tenellus KU2346)
ATGGACAAACTGAGCAAGTCTGATCCGTTCGTCGTGGTGAAGATAAAGAC
AGACGTGGATCCCGAATGGCTTGAACTGGGTCGGACGGAGATAGTTTCTA
ATACTCAGGATCCCTTTTTCACAACTCAACTGTCAGCCATGTTTCTGTTT
GAGGAGGTGCAACACCTCAGATTTGAGGTCTATGATGCTGATTGTGTGTA
CAAGAGCAATGCCAGTTCCGCTGTCTTGATCCTGGCTAAACAGGACTTTC
AGGGTTCTGCTGAGACTACAGTGGCTAGTGTGTTGGGATCAGTGGACCAG
ACTTTAGGCTTGAAACTGGATCGACCGAGGGGAAAAGGCTCCACTGCAGA
AGTGTTTGTTAGGATGGAGGAGGTAGCACATCAGCATGACCTGGTCACAC
TGAAGCTGCGTGCTGCGAAGGTTGACAAGAAGGACTTGACTTCAAGTGAT
CCGTTTCTGAGAATATCCCGAGCCTTGGAGAGGGGGGAGTGGGTCAGTAT
CTTCAAGACAGAGGTGAAGAACCGGACTCTCAATCCTGTTTGGAGACCGA
TACAGGGATCAGTCCAGAGGTTGGTGAACGGTGACTTATACCGGCCGCTG
CGATTCGATTGCTGGGATTATGATTTAGGTGGAGGGCATGACTTCATTGG
ATCTTGTGAGGCATCAATTATTGACCTTCAGGTACTGTTGTTGCTGATGA
TTTTATTTGTGGGAGAATGGGGGGGTATTTTTGGCAACTGTAGTTGA
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