mRNA_C-tenellus_contig8609.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8609.1.1
Unique NamemRNA_C-tenellus_contig8609.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig8609.1.1 vs. uniprot
Match: A0A6H5J6N3_9PHAE (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J6N3_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 1.440e-12
Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    1 KVGGPAPAFTAKDQDGNDVTLASFKGLKNVVVYFYPKDNT 120
            K+G  APAF+ KDQDG +VTL+SFKG KNV+VYFYPKD T
Sbjct:   45 KIGSDAPAFSVKDQDGAEVTLSSFKGQKNVIVYFYPKDAT 84
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BLAST of mRNA_C-tenellus_contig8609.1.1 vs. uniprot
Match: A0A1C2GSU3_9SPHI (Peroxiredoxin n=1 Tax=Mucilaginibacter sp. PPCGB 2223 TaxID=1886027 RepID=A0A1C2GSU3_9SPHI)

HSP 1 Score: 62.8 bits (151), Expect = 3.080e-11
Identity = 29/40 (72.50%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:    1 KVGGPAPAFTAKDQDGNDVTLASFKGLKNVVVYFYPKDNT 120
            K G  AP FTAKDQ+GNDVTL+SF+G KNV++YFYPKD+T
Sbjct:    5 KEGDKAPDFTAKDQNGNDVTLSSFRG-KNVILYFYPKDDT 43
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BLAST of mRNA_C-tenellus_contig8609.1.1 vs. uniprot
Match: UPI00191D2AB9 (thioredoxin-dependent thiol peroxidase n=1 Tax=Marivirga atlantica TaxID=1548457 RepID=UPI00191D2AB9)

HSP 1 Score: 61.6 bits (148), Expect = 8.010e-11
Identity = 28/39 (71.79%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    4 VGGPAPAFTAKDQDGNDVTLASFKGLKNVVVYFYPKDNT 120
            +G  AP FTAKDQDGND++LA FKG K VV+YFYPKD+T
Sbjct:    5 IGDKAPDFTAKDQDGNDISLADFKG-KKVVLYFYPKDST 42
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BLAST of mRNA_C-tenellus_contig8609.1.1 vs. uniprot
Match: UPI001FD56A4B (thioredoxin-dependent thiol peroxidase n=1 Tax=Dyadobacter sp. U1 TaxID=2910158 RepID=UPI001FD56A4B)

HSP 1 Score: 60.5 bits (145), Expect = 2.380e-10
Identity = 28/40 (70.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    1 KVGGPAPAFTAKDQDGNDVTLASFKGLKNVVVYFYPKDNT 120
            +VG  APAFTAKDQ+GN+V L+ FKG K V++YFYPKDNT
Sbjct:    4 QVGDKAPAFTAKDQNGNEVKLSDFKGEK-VILYFYPKDNT 42
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BLAST of mRNA_C-tenellus_contig8609.1.1 vs. uniprot
Match: A0A0Q5TB70_9BACT (Thiol peroxidase n=2 Tax=Dyadobacter TaxID=120831 RepID=A0A0Q5TB70_9BACT)

HSP 1 Score: 60.1 bits (144), Expect = 3.360e-10
Identity = 27/40 (67.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    1 KVGGPAPAFTAKDQDGNDVTLASFKGLKNVVVYFYPKDNT 120
            + G PAPAF+AKDQDGN+V L+ FKG K +V+YFYPKD+T
Sbjct:    4 EAGEPAPAFSAKDQDGNEVKLSDFKG-KKLVLYFYPKDDT 42
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BLAST of mRNA_C-tenellus_contig8609.1.1 vs. uniprot
Match: A0A7V2HAI1_9BACT (Peroxiredoxin n=1 Tax=Candidatus Uhrbacteria bacterium TaxID=2053634 RepID=A0A7V2HAI1_9BACT)

HSP 1 Score: 59.7 bits (143), Expect = 4.230e-10
Identity = 25/39 (64.10%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    4 VGGPAPAFTAKDQDGNDVTLASFKGLKNVVVYFYPKDNT 120
            +G PAP F+ +DQDGN+VTLASFKG++ VV+ FYP D+T
Sbjct:    2 IGRPAPDFSLRDQDGNEVTLASFKGIRPVVLIFYPGDDT 40
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BLAST of mRNA_C-tenellus_contig8609.1.1 vs. uniprot
Match: A0A1T5FXS4_9BACT (Peroxiredoxin Q/BCP n=6 Tax=Dyadobacter TaxID=120831 RepID=A0A1T5FXS4_9BACT)

HSP 1 Score: 59.7 bits (143), Expect = 4.730e-10
Identity = 27/40 (67.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    1 KVGGPAPAFTAKDQDGNDVTLASFKGLKNVVVYFYPKDNT 120
            +VG PAPAF+AKDQDG +V L+ FKG K V++YFYPKD+T
Sbjct:    4 QVGDPAPAFSAKDQDGKEVKLSDFKGEK-VILYFYPKDDT 42
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BLAST of mRNA_C-tenellus_contig8609.1.1 vs. uniprot
Match: A0A519V2V9_9SPHI (Thioredoxin-dependent thiol peroxidase n=2 Tax=Pedobacter TaxID=84567 RepID=A0A519V2V9_9SPHI)

HSP 1 Score: 59.7 bits (143), Expect = 4.820e-10
Identity = 28/40 (70.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    1 KVGGPAPAFTAKDQDGNDVTLASFKGLKNVVVYFYPKDNT 120
            KVG  AP FT+KDQ+GN+V+LA FKG K VV+YFYPKD+T
Sbjct:    5 KVGDKAPEFTSKDQNGNEVSLAQFKGQK-VVLYFYPKDST 43
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BLAST of mRNA_C-tenellus_contig8609.1.1 vs. uniprot
Match: A0A2H0CTG6_9BACT (Thioredoxin-dependent thiol peroxidase n=1 Tax=Nitrospinae bacterium CG22_combo_CG10-13_8_21_14_all_47_10 TaxID=1974050 RepID=A0A2H0CTG6_9BACT)

HSP 1 Score: 59.7 bits (143), Expect = 4.910e-10
Identity = 28/40 (70.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    1 KVGGPAPAFTAKDQDGNDVTLASFKGLKNVVVYFYPKDNT 120
            K G  AP FTA DQDG+ V L+SFKG KNVV+YFYPKD T
Sbjct:    5 KEGNKAPDFTAVDQDGSKVKLSSFKGEKNVVLYFYPKDMT 44
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BLAST of mRNA_C-tenellus_contig8609.1.1 vs. uniprot
Match: A0A7V3FMC4_9DELT (Thioredoxin peroxidase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7V3FMC4_9DELT)

HSP 1 Score: 59.7 bits (143), Expect = 5.180e-10
Identity = 27/40 (67.50%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:    1 KVGGPAPAFTAKDQDGNDVTLASFKGLKNVVVYFYPKDNT 120
            K G PAP FT  DQDG  V L+ FKG KNVV+YFYPKD T
Sbjct:    7 KEGAPAPDFTLPDQDGKKVKLSDFKGKKNVVLYFYPKDMT 46
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8609.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J6N3_9PHAE1.440e-1272.50Thioredoxin domain-containing protein n=2 Tax=Ecto... [more]
A0A1C2GSU3_9SPHI3.080e-1172.50Peroxiredoxin n=1 Tax=Mucilaginibacter sp. PPCGB 2... [more]
UPI00191D2AB98.010e-1171.79thioredoxin-dependent thiol peroxidase n=1 Tax=Mar... [more]
UPI001FD56A4B2.380e-1070.00thioredoxin-dependent thiol peroxidase n=1 Tax=Dya... [more]
A0A0Q5TB70_9BACT3.360e-1067.50Thiol peroxidase n=2 Tax=Dyadobacter TaxID=120831 ... [more]
A0A7V2HAI1_9BACT4.230e-1064.10Peroxiredoxin n=1 Tax=Candidatus Uhrbacteria bacte... [more]
A0A1T5FXS4_9BACT4.730e-1067.50Peroxiredoxin Q/BCP n=6 Tax=Dyadobacter TaxID=1208... [more]
A0A519V2V9_9SPHI4.820e-1070.00Thioredoxin-dependent thiol peroxidase n=2 Tax=Ped... [more]
A0A2H0CTG6_9BACT4.910e-1070.00Thioredoxin-dependent thiol peroxidase n=1 Tax=Nit... [more]
A0A7V3FMC4_9DELT5.180e-1067.50Thioredoxin peroxidase n=1 Tax=Deltaproteobacteria... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8609contigC-tenellus_contig8609:40..159 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LS09
Preferred nameDOT5
PFAMsAhpC-TSA
Model size120
Max annot lvl2759|Eukaryota
KEGG koko:K03564,ko:K17275
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000302,GO:0000303,GO:0000305,GO:0003674,GO:0003824,GO:0004601,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006801,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008379,GO:0009056,GO:0009636,GO:0009987,GO:0010035,GO:0016209,GO:0016491,GO:0016684,GO:0016999,GO:0017001,GO:0017144,GO:0019430,GO:0019725,GO:0033554,GO:0034599,GO:0034614,GO:0035690,GO:0042221,GO:0042493,GO:0042542,GO:0042592,GO:0042737,GO:0042743,GO:0042744,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044248,GO:0044424,GO:0044464,GO:0045454,GO:0046677,GO:0050789,GO:0050794,GO:0050896,GO:0051186,GO:0051187,GO:0051716,GO:0051920,GO:0055114,GO:0061687,GO:0061691,GO:0061692,GO:0065007,GO:0065008,GO:0070301,GO:0070887,GO:0071236,GO:0071450,GO:0071451,GO:0072593,GO:0097237,GO:0098754,GO:0098869,GO:1901700,GO:1901701,GO:1990748
Exons1
Evalue8.49e-14
EggNOG OGsCOG1225@1|root,KOG0855@2759|Eukaryota
EC1.11.1.15
Descriptionperoxiredoxin activity
Cds size120
COG categoryO
BRITEko00000,ko01000,ko04147,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790114.1319768-CDS-C-tenellus_contig8609:39..1591680790114.1319768-CDS-C-tenellus_contig8609:39..159Choristocarpus tenellus KU2346CDSC-tenellus_contig8609 40..159 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8609.1.1prot_C-tenellus_contig8609.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8609 40..159 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8609.1.1

>prot_C-tenellus_contig8609.1.1 ID=prot_C-tenellus_contig8609.1.1|Name=mRNA_C-tenellus_contig8609.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=40bp
KVGGPAPAFTAKDQDGNDVTLASFKGLKNVVVYFYPKDNT
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mRNA from alignment at C-tenellus_contig8609:40..159-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8609.1.1 ID=mRNA_C-tenellus_contig8609.1.1|Name=mRNA_C-tenellus_contig8609.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=120bp|location=Sequence derived from alignment at C-tenellus_contig8609:40..159- (Choristocarpus tenellus KU2346)
AAGGTGGGCGGCCCTGCTCCCGCCTTCACGGCGAAGGACCAGGATGGCAA
TGATGTCACACTGGCCTCCTTCAAGGGACTGAAGAATGTGGTAGTGTACT
TCTACCCAAAGGACAACACT
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Coding sequence (CDS) from alignment at C-tenellus_contig8609:40..159-

>mRNA_C-tenellus_contig8609.1.1 ID=mRNA_C-tenellus_contig8609.1.1|Name=mRNA_C-tenellus_contig8609.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=120bp|location=Sequence derived from alignment at C-tenellus_contig8609:40..159- (Choristocarpus tenellus KU2346)
AAGGTGGGCGGCCCTGCTCCCGCCTTCACGGCGAAGGACCAGGATGGCAA
TGATGTCACACTGGCCTCCTTCAAGGGACTGAAGAATGTGGTAGTGTACT
TCTACCCAAAGGACAACACT
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