mRNA_C-tenellus_contig8575.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8575.2.1
Unique NamemRNA_C-tenellus_contig8575.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig8575.2.1 vs. uniprot
Match: A0A6H5K6R3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K6R3_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 1.870e-42
Identity = 77/107 (71.96%), Postives = 90/107 (84.11%), Query Frame = 3
Query:  246 MPVRVRLQRFGRRGRPFYRVVVADSRAPRDGKFIEIVGNYDPIANRSGVKEVTFNVERVKYWLSVGAQASDRVEWLLGQFGILPPQVPRTSQTMQHIPKKQRAEALK 566
            M VRVRLQR GRR RPFYRVVVADSRAPRDGKFIE+VG Y+P+A RSGVKEVTF V+R++YW+SVGAQ SDRV WLLGQFGILPP+V   ++T Q +P+K+  E  K
Sbjct:    1 MTVRVRLQRLGRRNRPFYRVVVADSRAPRDGKFIELVGTYNPLATRSGVKEVTFKVDRIRYWISVGAQPSDRVAWLLGQFGILPPKVVPVARTKQTVPRKEWKELQK 107          
BLAST of mRNA_C-tenellus_contig8575.2.1 vs. uniprot
Match: A0A7S3PWJ7_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PWJ7_9STRA)

HSP 1 Score: 142 bits (357), Expect = 1.080e-38
Identity = 68/104 (65.38%), Postives = 82/104 (78.85%), Query Frame = 3
Query:  246 MPVRVRLQRFGRRGRPFYRVVVADSRAPRDGKFIEIVGNYDPIANRSGVKEVTFNVERVKYWLSVGAQASDRVEWLLGQFGILPPQVPRTSQTMQHIPKKQRAE 557
            MPVR+RLQRFGR  RPFYR+V ADSRAPRDGKF+EIVG Y+PIA + G+KE+    +R+KYWL VGAQ SDRV W+LG+FG+LPP  PR S   + IPKK R +
Sbjct:    1 MPVRLRLQRFGRTHRPFYRMVAADSRAPRDGKFLEIVGTYNPIATKEGIKEIRLKTDRLKYWLGVGAQPSDRVSWILGKFGVLPPPPPRVS-LQKMIPKKDRED 103          
BLAST of mRNA_C-tenellus_contig8575.2.1 vs. uniprot
Match: A0A836CM62_9STRA (Putative 30S ribosomal protein S16 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM62_9STRA)

HSP 1 Score: 141 bits (356), Expect = 1.620e-38
Identity = 71/106 (66.98%), Postives = 83/106 (78.30%), Query Frame = 3
Query:  246 MPVRVRLQRFGRRGRPFYRVVVADSRAPRDGKFIEIVGNYDPIANRSGVKEVTFNVERVKYWLSVGAQASDRVEWLLGQFGILPPQVPRTSQTMQHIPKKQRAEAL 563
            M VR+RLQRFG + +PFYRVV AD+RAPRDGKFIEIVG Y+PI  R G KEV FN +R++YWL VGA+ S+RV WLLGQF ILP  VPR   T  H+PKK+RAE L
Sbjct:    1 MVVRLRLQRFGHKNQPFYRVVAADARAPRDGKFIEIVGTYNPIPTRDGYKEVRFNRQRIEYWLGVGAEPSERVAWLLGQFNILP-LVPRRIFTQNHLPKKERAELL 105          
BLAST of mRNA_C-tenellus_contig8575.2.1 vs. uniprot
Match: A0A7S1VML7_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VML7_9STRA)

HSP 1 Score: 135 bits (341), Expect = 2.760e-36
Identity = 66/102 (64.71%), Postives = 81/102 (79.41%), Query Frame = 3
Query:  246 MPVRVRLQRFGRRGRPFYRVVVADSRAPRDGKFIEIVGNYDPIANRSGVKEVTFNVERVKYWLSVGAQASDRVEWLLGQFGILPPQVPRTSQTMQHIPKKQR 551
            M VR+RLQRFG+R RPFYR+V A+ RAPRDGKF+EI+G Y+PIA R+G+KE+    +R+KYWLSVGAQ SDRV W+LG+FGILPP  PR S T     KK+R
Sbjct:    1 MVVRLRLQRFGKRNRPFYRMVAANVRAPRDGKFLEIIGTYNPIATRAGLKEIRLKTDRIKYWLSVGAQPSDRVSWILGKFGILPPPPPRFS-TQAMFTKKER 101          
BLAST of mRNA_C-tenellus_contig8575.2.1 vs. uniprot
Match: A0A7S1ZG56_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZG56_TRICV)

HSP 1 Score: 135 bits (340), Expect = 3.890e-36
Identity = 68/105 (64.76%), Postives = 82/105 (78.10%), Query Frame = 3
Query:  246 MPVRVRLQRFGRRGRPFYRVVVADSRAPRDGKFIEIVGNYDPIANRSGVKEVTFNVERVKYWLSVGAQASDRVEWLLGQFGILPPQVPRTSQTMQHIPKKQRAEA 560
            M VR+RLQRFG++  PFYR+V A+SRAPRDGKF EIVG Y+PIAN SG+KE+    +R++YWLSVGAQ SDRV W+LG+FGILPP  PR S   + IPKK R  A
Sbjct:    1 MVVRLRLQRFGQKKLPFYRMVAANSRAPRDGKFFEIVGTYNPIANASGIKEIRLKTDRLRYWLSVGAQPSDRVAWILGKFGILPPPPPRYS-PQRMIPKKDREPA 104          
BLAST of mRNA_C-tenellus_contig8575.2.1 vs. uniprot
Match: A0A7R9W8Z9_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W8Z9_9STRA)

HSP 1 Score: 134 bits (338), Expect = 7.050e-36
Identity = 68/103 (66.02%), Postives = 83/103 (80.58%), Query Frame = 3
Query:  252 VRVRLQRFGRRGRPFYRVVVADSRAPRDGKFIEIVGNYDPIANRSGVKEVTFNVERVKYWLSVGAQASDRVEWLLGQFGILPPQVPRTS-QTMQHIPKKQRAE 557
            VR+RLQRFG++  PFYR+V A++RAPRDGKF+EIVG Y+PIAN+ G+KE+    +R+KYWLSVGAQ SDRV W+LG+FGILPP  PR S Q M  IPKK R E
Sbjct:    1 VRLRLQRFGKKHCPFYRMVAANARAPRDGKFLEIVGTYNPIANKHGIKEIRLKTDRLKYWLSVGAQPSDRVAWILGKFGILPPPPPRYSPQNM--IPKKDREE 101          
BLAST of mRNA_C-tenellus_contig8575.2.1 vs. uniprot
Match: K8ZAJ3_NANGC (Small subunit ribosomal protein S16 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8ZAJ3_NANGC)

HSP 1 Score: 137 bits (344), Expect = 7.660e-36
Identity = 68/129 (52.71%), Postives = 92/129 (71.32%), Query Frame = 3
Query:  246 MPVRVRLQRFGRRGRPFYRVVVADSRAPRDGKFIEIVGNYDPIANRSGVKEVTFNVERVKYWLSVGAQASDRVEWLLGQFGILPPQVPRTSQTMQHIPKKQRAEALKG-------------GQSRSLHT 593
            M VR+RLQRFGR  RPFYR+V ADSRAPRDG+FIE +G+YDPIA++ GVKEV  + +R+KYWLSVGAQ SDRV WL+ ++ +LP + P    T++H+P+K+R E ++              G +R +HT
Sbjct:    1 MVVRLRLQRFGRHDRPFYRIVAADSRAPRDGRFIERLGSYDPIASKDGVKEVRLHSDRIKYWLSVGAQPSDRVAWLMSKYNLLP-EAPLRPMTLRHLPRKERKEVVEAKXXXXXXXXXKSQGAARQMHT 128          
BLAST of mRNA_C-tenellus_contig8575.2.1 vs. uniprot
Match: A0A7S2RKN7_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RKN7_9STRA)

HSP 1 Score: 134 bits (337), Expect = 1.020e-35
Identity = 65/104 (62.50%), Postives = 82/104 (78.85%), Query Frame = 3
Query:  246 MPVRVRLQRFGRRGRPFYRVVVADSRAPRDGKFIEIVGNYDPIANRSGVKEVTFNVERVKYWLSVGAQASDRVEWLLGQFGILPPQVPRTSQTMQHIPKKQRAE 557
            M VR+RLQRFGR   PFYR+V ADSR+PRDGK +EI+G Y+PIAN+ G+KE+    +R++YWLSVGAQ SDRV W+LG+FGILPP  PR +   + +PKK RAE
Sbjct:    1 MVVRLRLQRFGRTHSPFYRMVAADSRSPRDGKHLEILGTYNPIANKEGIKEIRLKTDRLRYWLSVGAQPSDRVGWILGKFGILPPPPPRYN-PQKMVPKKDRAE 103          
BLAST of mRNA_C-tenellus_contig8575.2.1 vs. uniprot
Match: A0A7S0C1J3_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C1J3_9STRA)

HSP 1 Score: 132 bits (332), Expect = 5.660e-35
Identity = 64/105 (60.95%), Postives = 83/105 (79.05%), Query Frame = 3
Query:  246 MPVRVRLQRFGRRGRPFYRVVVADSRAPRDGKFIEIVGNYDPIANRSGVKEVTFNVERVKYWLSVGAQASDRVEWLLGQFGILPPQVPRTSQTMQHIPKKQRAEA 560
            M VR+RLQRFGR   PFYR+V A++RAPRDGKF+EIVG+Y+PI N+ G+KEV    +R++YW+SVGAQ SDRV W+LG+FG+LPP  P+ S   + IPKK R E+
Sbjct:    1 MVVRLRLQRFGRTHSPFYRMVAANARAPRDGKFLEIVGSYNPIPNKHGIKEVRLKTDRLRYWISVGAQPSDRVAWVLGKFGVLPPAPPKFS-PQKMIPKKDRPES 104          
BLAST of mRNA_C-tenellus_contig8575.2.1 vs. uniprot
Match: A0A7S4NGP0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NGP0_9STRA)

HSP 1 Score: 132 bits (332), Expect = 6.010e-35
Identity = 65/107 (60.75%), Postives = 83/107 (77.57%), Query Frame = 3
Query:  246 MPVRVRLQRFGRRGRPFYRVVVADSRAPRDGKFIEIVGNYDPIANRSGVKEVTFNVERVKYWLSVGAQASDRVEWLLGQFGILPPQVPRTSQTMQHIPKKQRAEALK 566
            M VR+RLQRFG+   PFYR+V A+S+APRDGKF+EI+G Y+P+AN+ G+KE+    +R+KYW+SVGAQ SDRV W+LG+FGILPP  PR S   + IPKK R E  K
Sbjct:    1 MVVRLRLQRFGKTHSPFYRMVAANSKAPRDGKFLEILGTYNPMANKHGIKEIRLKTDRLKYWVSVGAQPSDRVAWVLGKFGILPPPPPRYS-PQRMIPKKDREEQEK 106          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8575.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K6R3_9PHAE1.870e-4271.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3PWJ7_9STRA1.080e-3865.38Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A836CM62_9STRA1.620e-3866.98Putative 30S ribosomal protein S16 n=1 Tax=Tribone... [more]
A0A7S1VML7_9STRA2.760e-3664.71Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S1ZG56_TRICV3.890e-3664.76Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7R9W8Z9_9STRA7.050e-3666.02Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
K8ZAJ3_NANGC7.660e-3652.71Small subunit ribosomal protein S16 n=3 Tax=Monodo... [more]
A0A7S2RKN7_9STRA1.020e-3562.50Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S0C1J3_9STRA5.660e-3560.95Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S4NGP0_9STRA6.010e-3560.75Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8575contigC-tenellus_contig8575:2390..5168 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LTT8
PFAMsRibosomal_S16
Model size996
Max annot lvl2759|Eukaryota
KEGG koko:K02959
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000313,GO:0000314,GO:0003006,GO:0003674,GO:0003735,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005763,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009526,GO:0009536,GO:0009790,GO:0009791,GO:0009793,GO:0009941,GO:0009987,GO:0010154,GO:0010467,GO:0015935,GO:0016020,GO:0019538,GO:0019866,GO:0019904,GO:0022414,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032501,GO:0032502,GO:0032543,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0061458,GO:0070013,GO:0071704,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons3
Evalue2.43e-44
EggNOG OGsCOG0228@1|root,KOG3419@2759|Eukaryota
Ec32 ortholog descriptionRibosomal protein S16 domain
Ec32 orthologEc-28_002810.1
Descriptionribosomal protein s16
Cds size768
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03029
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790112.2258263-UTR-C-tenellus_contig8575:2389..24021680790112.2258263-UTR-C-tenellus_contig8575:2389..2402Choristocarpus tenellus KU2346UTRC-tenellus_contig8575 2390..2402 -
1680790112.2691553-UTR-C-tenellus_contig8575:4953..51681680790112.2691553-UTR-C-tenellus_contig8575:4953..5168Choristocarpus tenellus KU2346UTRC-tenellus_contig8575 4954..5168 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790112.2380936-CDS-C-tenellus_contig8575:2402..29031680790112.2380936-CDS-C-tenellus_contig8575:2402..2903Choristocarpus tenellus KU2346CDSC-tenellus_contig8575 2403..2903 -
1680790112.247584-CDS-C-tenellus_contig8575:3335..34641680790112.247584-CDS-C-tenellus_contig8575:3335..3464Choristocarpus tenellus KU2346CDSC-tenellus_contig8575 3336..3464 -
1680790112.2598922-CDS-C-tenellus_contig8575:4815..49531680790112.2598922-CDS-C-tenellus_contig8575:4815..4953Choristocarpus tenellus KU2346CDSC-tenellus_contig8575 4816..4953 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8575.2.1prot_C-tenellus_contig8575.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8575 2403..4953 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8575.2.1

>prot_C-tenellus_contig8575.2.1 ID=prot_C-tenellus_contig8575.2.1|Name=mRNA_C-tenellus_contig8575.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=256bp
MLGEPEVAGAMPVRVRLQRFGRRGRPFYRVVVADSRAPRDGKFIEIVGNY
DPIANRSGVKEVTFNVERVKYWLSVGAQASDRVEWLLGQFGILPPQVPRT
SQTMQHIPKKQRAEALKGGQSRSLHTYREVGAIFGSRPWAGLGSSGVGPC
CALGGHGLGVGTGSLLSGLGSGVFSGVASSSTSLLTSGSEFEEAGARDKS
VGLSVEGAEEVVCNSLQLKPPVVVGGSLHAWSDRGGVPSTVPPTIVPARK
SVWGG*
back to top

mRNA from alignment at C-tenellus_contig8575:2390..5168-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8575.2.1 ID=mRNA_C-tenellus_contig8575.2.1|Name=mRNA_C-tenellus_contig8575.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2779bp|location=Sequence derived from alignment at C-tenellus_contig8575:2390..5168- (Choristocarpus tenellus KU2346)
GGTTCTTGAGGTTTGAGGGAAGGGTATATTGGTTTGGCGTGTCCTATTCA GATCCTCCCCTCAGGTGGGCTTTTGGGTGCATGGTTTTGATATTCTACTA GTGGAGTCTTCTCGGGATCTTGCTCTATGTCTTCATCGCCTCGTTCAAAC GCATCCATCTTTATGTCACAGTACTAACCTACCTGCCCCACCTCATTTCC ACCCTGCACATCTCAATGCTAGGTGAACCCGAGGTTGCAGGGGCAATGCC AGTGCGTGTTCGTCTCCAGCGTTTTGGTCGCCGAGGTCGACCCTTCTACC GTGTGGTAGTGGCTGACTCGAGGGCTCCTCGAGATGGAAAATTTATCGAG ATTGTGAGTATGCCACACGATACATGTATTGGAGGGCATTCAGAAACTCT ATTGGGCAATTTTCTTTTGCTATTGCCTGTGGTGGTGGGTAGCTAGCGCG TTAGTCCTTTGTTCCGGTCTATGTCTCTACGACAGCCCTGCGAAGTGTTA TTACACCATCTCAGACCAGTCCCACCTCTTCCGAATACTGTTTTGATATC TTCAATGGTCTGCAATTGTGTTTCACAACTCCCGCATGGACTCGTTGCGC AGTTACTGAGGTGTGATGTTTCGTTCTATTGGAAAGTTAGTATGAGTGGT TCACCTCAGAAGTCTGTGGAAGTTCGCCGAAAGAGGAAATCTGATATCGC TATTGCATCTACTGTAACTACATGCCTCTCCTTGCACCTGAAGAACCTAC AACAAAACAGAGTAGTTGAAAACAAGGCTCCCATGAATAATTACTTCAAT GCCATGTTGCAGAGTCGAAACCCATGGAGGAATGGCAATCTTCCGAACCA CTTCAATGAACCCTTAAAGAAAAACCTGTCCTTTCTTCATGTGAAAAGGA TGAATTATGAGACTCAATATTGAAACCCGTCACAAAAAACGACTCAAGAA AATACTATCCACCGAACCCCTCTCCTCTCCATGGGGTTTCGGTCTATGAG CCCTTGCTATGATAGGCGGCTATCCATTTTTTGGTAACGTAATGCGACCT TGACACGGATGTCACTTAAGATTTGTAGGGTGTTCCTCTTTACAATGAGG CTCTCGAAGCTACTGGTGGAATCTGTGATGAACCCGCGCACAGTACGTGA AGTTCCTCTTCCCTCCCCTCTGCATACCCCCTGTACTTTCCACCTGACCC ACAAGTTTGCTGAGTTGCCATGTAGTGGTTGGGTGTTGGCCTCTGGAAAA ATTACCTTTCCAGCATTTCAGTTGATGGTATGGTATGACTATGCCTGTTT GCAGTATGAGTAGAGGTCTGATTACAGATGTAAATTATGTTATGTTATGC TGCTCTACCAACCGACTACCCATTTTGAAGAGAATGTAAGTTAAGGATTT TCCAGAGTAGTTGGTGGCATGCACCACACAGTGTCCTTATCTTTAGTGCA ACTTTCTGTGGGCCCCTTCCTGGAAAAGTAGTGCTCAAGAGCTTCACACT GTATAGCAGGTGACACAATTCAAGACTGTTGTGTGTGGATAGTTTGAGGG CAATAAACATGATAGTTTTTAATCTCACTTAGCGGTAGCAACCATCTTTG CCCCCCTTACATCAGACCAATCCAAAAAGAGACCTCACCCCCATACCTTT CACCCCTGCCAATCTTATTCTTAGTTCCTCTTATCCCTTTTCCCCCTCTG TAAGGTCGGCAATTATGATCCAATCGCCAATAGATCTGGTGTGAAAGAGG TGACCTTCAATGTAGAGCGAGTGAAGTATTGGCTCTCAGTTGGGGCTCAG GCCAGTGACCGTGTGGAGTGGCTCCTTGGCCAGGTAATGGAGGTGTTGGG GAAGATGGGGGTGTGAAGCAGAGTTTTAGAAAAATACAATGTGCATGTAC ACTATTTGTTCTTTTGTTGTCTCAGGACTTGATAGGATAGGTGTACAGGT AGTAATTGCACCTAGGATTGATGGGGCCTACAGAGGTGAAATGTGTGAGG AGTGGGGAGTTTGTGCAAACCAGGTGGAAGGTTCTGGTTCTTGAAGTGAC GTCGGATATGCATGCTCTTTTGCGGTCGAGCACTTTTGATTTGTTGTGGG GTTCAATGGAGAGCATATTTTCTGTTCGTTCCTACAGATCCATTGACATC AACTCTCTCTCTGCCCCAAATCCTAACTTTTGCCAACTCCCTATTCCACC TCCTGTTGTGTCCAAACCACCTACACACAACTCTTGCGACGATTTCGTGT TTGGCTTGATCACAGTTTGGCATTCTCCCGCCACAAGTTCCTCGCACATC TCAGACAATGCAGCACATCCCCAAGAAACAACGGGCAGAGGCCCTCAAGG GAGGTCAATCACGCTCTCTTCACACATACAGAGAGGTTGGGGCAATCTTT GGGTCAAGGCCTTGGGCAGGCCTAGGGAGCTCTGGAGTAGGTCCATGCTG TGCCCTTGGCGGCCATGGTCTTGGAGTCGGTACTGGATCATTGTTGTCTG GGTTGGGGTCTGGTGTTTTTTCTGGGGTGGCTTCTAGTTCGACAAGTCTT CTCACCTCTGGTTCTGAGTTTGAGGAAGCCGGGGCGAGAGACAAGAGTGT AGGACTCTCTGTGGAGGGGGCAGAAGAAGTAGTTTGCAATAGTTTACAGT TGAAACCACCAGTTGTGGTGGGAGGTTCGTTGCATGCATGGTCTGACAGG GGAGGAGTTCCCTCTACCGTGCCGCCAACAATTGTGCCTGCCAGGAAAAG TGTATGGGGGGGGTGAAGTACAGTAGCAT
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig8575:2390..5168-

>mRNA_C-tenellus_contig8575.2.1 ID=mRNA_C-tenellus_contig8575.2.1|Name=mRNA_C-tenellus_contig8575.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=768bp|location=Sequence derived from alignment at C-tenellus_contig8575:2390..5168- (Choristocarpus tenellus KU2346)
ATGCTAGGTGAACCCGAGGTTGCAGGGGCAATGCCAGTGCGTGTTCGTCT
CCAGCGTTTTGGTCGCCGAGGTCGACCCTTCTACCGTGTGGTAGTGGCTG
ACTCGAGGGCTCCTCGAGATGGAAAATTTATCGAGATTGTCGGCAATTAT
GATCCAATCGCCAATAGATCTGGTGTGAAAGAGGTGACCTTCAATGTAGA
GCGAGTGAAGTATTGGCTCTCAGTTGGGGCTCAGGCCAGTGACCGTGTGG
AGTGGCTCCTTGGCCAGTTTGGCATTCTCCCGCCACAAGTTCCTCGCACA
TCTCAGACAATGCAGCACATCCCCAAGAAACAACGGGCAGAGGCCCTCAA
GGGAGGTCAATCACGCTCTCTTCACACATACAGAGAGGTTGGGGCAATCT
TTGGGTCAAGGCCTTGGGCAGGCCTAGGGAGCTCTGGAGTAGGTCCATGC
TGTGCCCTTGGCGGCCATGGTCTTGGAGTCGGTACTGGATCATTGTTGTC
TGGGTTGGGGTCTGGTGTTTTTTCTGGGGTGGCTTCTAGTTCGACAAGTC
TTCTCACCTCTGGTTCTGAGTTTGAGGAAGCCGGGGCGAGAGACAAGAGT
GTAGGACTCTCTGTGGAGGGGGCAGAAGAAGTAGTTTGCAATAGTTTACA
GTTGAAACCACCAGTTGTGGTGGGAGGTTCGTTGCATGCATGGTCTGACA
GGGGAGGAGTTCCCTCTACCGTGCCGCCAACAATTGTGCCTGCCAGGAAA
AGTGTATGGGGGGGGTGA
back to top