mRNA_C-tenellus_contig8575.2.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig8575.2.1 vs. uniprot
Match: A0A6H5K6R3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K6R3_9PHAE) HSP 1 Score: 157 bits (396), Expect = 1.870e-42 Identity = 77/107 (71.96%), Postives = 90/107 (84.11%), Query Frame = 3 Query: 246 MPVRVRLQRFGRRGRPFYRVVVADSRAPRDGKFIEIVGNYDPIANRSGVKEVTFNVERVKYWLSVGAQASDRVEWLLGQFGILPPQVPRTSQTMQHIPKKQRAEALK 566 M VRVRLQR GRR RPFYRVVVADSRAPRDGKFIE+VG Y+P+A RSGVKEVTF V+R++YW+SVGAQ SDRV WLLGQFGILPP+V ++T Q +P+K+ E K Sbjct: 1 MTVRVRLQRLGRRNRPFYRVVVADSRAPRDGKFIELVGTYNPLATRSGVKEVTFKVDRIRYWISVGAQPSDRVAWLLGQFGILPPKVVPVARTKQTVPRKEWKELQK 107
BLAST of mRNA_C-tenellus_contig8575.2.1 vs. uniprot
Match: A0A7S3PWJ7_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PWJ7_9STRA) HSP 1 Score: 142 bits (357), Expect = 1.080e-38 Identity = 68/104 (65.38%), Postives = 82/104 (78.85%), Query Frame = 3 Query: 246 MPVRVRLQRFGRRGRPFYRVVVADSRAPRDGKFIEIVGNYDPIANRSGVKEVTFNVERVKYWLSVGAQASDRVEWLLGQFGILPPQVPRTSQTMQHIPKKQRAE 557 MPVR+RLQRFGR RPFYR+V ADSRAPRDGKF+EIVG Y+PIA + G+KE+ +R+KYWL VGAQ SDRV W+LG+FG+LPP PR S + IPKK R + Sbjct: 1 MPVRLRLQRFGRTHRPFYRMVAADSRAPRDGKFLEIVGTYNPIATKEGIKEIRLKTDRLKYWLGVGAQPSDRVSWILGKFGVLPPPPPRVS-LQKMIPKKDRED 103
BLAST of mRNA_C-tenellus_contig8575.2.1 vs. uniprot
Match: A0A836CM62_9STRA (Putative 30S ribosomal protein S16 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM62_9STRA) HSP 1 Score: 141 bits (356), Expect = 1.620e-38 Identity = 71/106 (66.98%), Postives = 83/106 (78.30%), Query Frame = 3 Query: 246 MPVRVRLQRFGRRGRPFYRVVVADSRAPRDGKFIEIVGNYDPIANRSGVKEVTFNVERVKYWLSVGAQASDRVEWLLGQFGILPPQVPRTSQTMQHIPKKQRAEAL 563 M VR+RLQRFG + +PFYRVV AD+RAPRDGKFIEIVG Y+PI R G KEV FN +R++YWL VGA+ S+RV WLLGQF ILP VPR T H+PKK+RAE L Sbjct: 1 MVVRLRLQRFGHKNQPFYRVVAADARAPRDGKFIEIVGTYNPIPTRDGYKEVRFNRQRIEYWLGVGAEPSERVAWLLGQFNILP-LVPRRIFTQNHLPKKERAELL 105
BLAST of mRNA_C-tenellus_contig8575.2.1 vs. uniprot
Match: A0A7S1VML7_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VML7_9STRA) HSP 1 Score: 135 bits (341), Expect = 2.760e-36 Identity = 66/102 (64.71%), Postives = 81/102 (79.41%), Query Frame = 3 Query: 246 MPVRVRLQRFGRRGRPFYRVVVADSRAPRDGKFIEIVGNYDPIANRSGVKEVTFNVERVKYWLSVGAQASDRVEWLLGQFGILPPQVPRTSQTMQHIPKKQR 551 M VR+RLQRFG+R RPFYR+V A+ RAPRDGKF+EI+G Y+PIA R+G+KE+ +R+KYWLSVGAQ SDRV W+LG+FGILPP PR S T KK+R Sbjct: 1 MVVRLRLQRFGKRNRPFYRMVAANVRAPRDGKFLEIIGTYNPIATRAGLKEIRLKTDRIKYWLSVGAQPSDRVSWILGKFGILPPPPPRFS-TQAMFTKKER 101
BLAST of mRNA_C-tenellus_contig8575.2.1 vs. uniprot
Match: A0A7S1ZG56_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZG56_TRICV) HSP 1 Score: 135 bits (340), Expect = 3.890e-36 Identity = 68/105 (64.76%), Postives = 82/105 (78.10%), Query Frame = 3 Query: 246 MPVRVRLQRFGRRGRPFYRVVVADSRAPRDGKFIEIVGNYDPIANRSGVKEVTFNVERVKYWLSVGAQASDRVEWLLGQFGILPPQVPRTSQTMQHIPKKQRAEA 560 M VR+RLQRFG++ PFYR+V A+SRAPRDGKF EIVG Y+PIAN SG+KE+ +R++YWLSVGAQ SDRV W+LG+FGILPP PR S + IPKK R A Sbjct: 1 MVVRLRLQRFGQKKLPFYRMVAANSRAPRDGKFFEIVGTYNPIANASGIKEIRLKTDRLRYWLSVGAQPSDRVAWILGKFGILPPPPPRYS-PQRMIPKKDREPA 104
BLAST of mRNA_C-tenellus_contig8575.2.1 vs. uniprot
Match: A0A7R9W8Z9_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W8Z9_9STRA) HSP 1 Score: 134 bits (338), Expect = 7.050e-36 Identity = 68/103 (66.02%), Postives = 83/103 (80.58%), Query Frame = 3 Query: 252 VRVRLQRFGRRGRPFYRVVVADSRAPRDGKFIEIVGNYDPIANRSGVKEVTFNVERVKYWLSVGAQASDRVEWLLGQFGILPPQVPRTS-QTMQHIPKKQRAE 557 VR+RLQRFG++ PFYR+V A++RAPRDGKF+EIVG Y+PIAN+ G+KE+ +R+KYWLSVGAQ SDRV W+LG+FGILPP PR S Q M IPKK R E Sbjct: 1 VRLRLQRFGKKHCPFYRMVAANARAPRDGKFLEIVGTYNPIANKHGIKEIRLKTDRLKYWLSVGAQPSDRVAWILGKFGILPPPPPRYSPQNM--IPKKDREE 101
BLAST of mRNA_C-tenellus_contig8575.2.1 vs. uniprot
Match: K8ZAJ3_NANGC (Small subunit ribosomal protein S16 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8ZAJ3_NANGC) HSP 1 Score: 137 bits (344), Expect = 7.660e-36 Identity = 68/129 (52.71%), Postives = 92/129 (71.32%), Query Frame = 3 Query: 246 MPVRVRLQRFGRRGRPFYRVVVADSRAPRDGKFIEIVGNYDPIANRSGVKEVTFNVERVKYWLSVGAQASDRVEWLLGQFGILPPQVPRTSQTMQHIPKKQRAEALKG-------------GQSRSLHT 593 M VR+RLQRFGR RPFYR+V ADSRAPRDG+FIE +G+YDPIA++ GVKEV + +R+KYWLSVGAQ SDRV WL+ ++ +LP + P T++H+P+K+R E ++ G +R +HT Sbjct: 1 MVVRLRLQRFGRHDRPFYRIVAADSRAPRDGRFIERLGSYDPIASKDGVKEVRLHSDRIKYWLSVGAQPSDRVAWLMSKYNLLP-EAPLRPMTLRHLPRKERKEVVEAKXXXXXXXXXKSQGAARQMHT 128
BLAST of mRNA_C-tenellus_contig8575.2.1 vs. uniprot
Match: A0A7S2RKN7_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RKN7_9STRA) HSP 1 Score: 134 bits (337), Expect = 1.020e-35 Identity = 65/104 (62.50%), Postives = 82/104 (78.85%), Query Frame = 3 Query: 246 MPVRVRLQRFGRRGRPFYRVVVADSRAPRDGKFIEIVGNYDPIANRSGVKEVTFNVERVKYWLSVGAQASDRVEWLLGQFGILPPQVPRTSQTMQHIPKKQRAE 557 M VR+RLQRFGR PFYR+V ADSR+PRDGK +EI+G Y+PIAN+ G+KE+ +R++YWLSVGAQ SDRV W+LG+FGILPP PR + + +PKK RAE Sbjct: 1 MVVRLRLQRFGRTHSPFYRMVAADSRSPRDGKHLEILGTYNPIANKEGIKEIRLKTDRLRYWLSVGAQPSDRVGWILGKFGILPPPPPRYN-PQKMVPKKDRAE 103
BLAST of mRNA_C-tenellus_contig8575.2.1 vs. uniprot
Match: A0A7S0C1J3_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C1J3_9STRA) HSP 1 Score: 132 bits (332), Expect = 5.660e-35 Identity = 64/105 (60.95%), Postives = 83/105 (79.05%), Query Frame = 3 Query: 246 MPVRVRLQRFGRRGRPFYRVVVADSRAPRDGKFIEIVGNYDPIANRSGVKEVTFNVERVKYWLSVGAQASDRVEWLLGQFGILPPQVPRTSQTMQHIPKKQRAEA 560 M VR+RLQRFGR PFYR+V A++RAPRDGKF+EIVG+Y+PI N+ G+KEV +R++YW+SVGAQ SDRV W+LG+FG+LPP P+ S + IPKK R E+ Sbjct: 1 MVVRLRLQRFGRTHSPFYRMVAANARAPRDGKFLEIVGSYNPIPNKHGIKEVRLKTDRLRYWISVGAQPSDRVAWVLGKFGVLPPAPPKFS-PQKMIPKKDRPES 104
BLAST of mRNA_C-tenellus_contig8575.2.1 vs. uniprot
Match: A0A7S4NGP0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NGP0_9STRA) HSP 1 Score: 132 bits (332), Expect = 6.010e-35 Identity = 65/107 (60.75%), Postives = 83/107 (77.57%), Query Frame = 3 Query: 246 MPVRVRLQRFGRRGRPFYRVVVADSRAPRDGKFIEIVGNYDPIANRSGVKEVTFNVERVKYWLSVGAQASDRVEWLLGQFGILPPQVPRTSQTMQHIPKKQRAEALK 566 M VR+RLQRFG+ PFYR+V A+S+APRDGKF+EI+G Y+P+AN+ G+KE+ +R+KYW+SVGAQ SDRV W+LG+FGILPP PR S + IPKK R E K Sbjct: 1 MVVRLRLQRFGKTHSPFYRMVAANSKAPRDGKFLEILGTYNPMANKHGIKEIRLKTDRLKYWVSVGAQPSDRVAWVLGKFGILPPPPPRYS-PQRMIPKKDREEQEK 106 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8575.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig8575.2.1 >prot_C-tenellus_contig8575.2.1 ID=prot_C-tenellus_contig8575.2.1|Name=mRNA_C-tenellus_contig8575.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=256bp MLGEPEVAGAMPVRVRLQRFGRRGRPFYRVVVADSRAPRDGKFIEIVGNYback to top mRNA from alignment at C-tenellus_contig8575:2390..5168- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig8575.2.1 ID=mRNA_C-tenellus_contig8575.2.1|Name=mRNA_C-tenellus_contig8575.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2779bp|location=Sequence derived from alignment at C-tenellus_contig8575:2390..5168- (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig8575:2390..5168- >mRNA_C-tenellus_contig8575.2.1 ID=mRNA_C-tenellus_contig8575.2.1|Name=mRNA_C-tenellus_contig8575.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=768bp|location=Sequence derived from alignment at C-tenellus_contig8575:2390..5168- (Choristocarpus tenellus KU2346)back to top |