mRNA_C-tenellus_contig8395.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8395.1.1
Unique NamemRNA_C-tenellus_contig8395.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig8395.1.1 vs. uniprot
Match: A0A484E539_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E539_BRELC)

HSP 1 Score: 142 bits (357), Expect = 4.650e-36
Identity = 75/177 (42.37%), Postives = 112/177 (63.28%), Query Frame = 1
Query:    7 SNSVSFVTMIVTLILVKNYSKSQISSPTEGGTSGFSEGRRGRLKKPRVDMAFVRRIYRLLGVMVPGPASLEVGCLGAVAGLLVARTSLDVVMLNVTTTIEHAIVGRNKAGFTLGILRFARLCVPLAAVNSLLKYFQAELALRFRQRLTEHVLGKYMSGFTYYAVSNLDNRISNPDQV 537
            S +VS  +++   I ++ + + + ++      S F   ++G  +K  +D  F  R  RL  V+VPGP + E+G    VA +LVARTS D+V+L+  T +E AI+ R++  F + + RF  + +P++ VNSLLKY   EL LRFR RLT+H+ G+Y+ GF YY VSNLDNRISN DQ+
Sbjct:   11 SGAVSIASIVALAIAIRKHGQEKANAALSRD-SEFMTKKQGSRQKVAIDRKFYYRFLRLFKVIVPGPFTAEIGFAALVACMLVARTSFDIVLLHAFTAVEKAIISRSQTEFMVHLRRFVAIMLPMSCVNSLLKYGHTELCLRFRTRLTQHLYGQYVKGFVYYKVSNLDNRISNADQL 186          
BLAST of mRNA_C-tenellus_contig8395.1.1 vs. uniprot
Match: H3GA94_PHYRM (Uncharacterized protein n=24 Tax=Phytophthora TaxID=4783 RepID=H3GA94_PHYRM)

HSP 1 Score: 134 bits (337), Expect = 2.180e-33
Identity = 70/137 (51.09%), Postives = 92/137 (67.15%), Query Frame = 1
Query:  127 GRLKKPRVDMAFVRRIYRLLGVMVPGPASLEVGCLGAVAGLLVARTSLDVVMLNVTTTIEHAIVGRNKAGFTLGILRFARLCVPLAAVNSLLKYFQAELALRFRQRLTEHVLGKYMSGFTYYAVSNLDNRISNPDQV 537
            G  +K  V+  F RR  RL  V++PGP + EVG    VA +LVARTS D+V+L+  T IE AI+ R++  F   + RF  + +P++ VNSLLKY   EL+LRFR RLT H+  +Y+ GF YY VSNLDNRISN DQ+
Sbjct:    6 GSRQKVAVNKEFYRRFLRLFKVIIPGPFTAEVGFAALVAVMLVARTSFDIVVLHTFTAIERAIISRSQTEFLRHLRRFVAIMLPMSCVNSLLKYGHTELSLRFRTRLTRHLYEQYVKGFVYYKVSNLDNRISNADQL 142          
BLAST of mRNA_C-tenellus_contig8395.1.1 vs. uniprot
Match: A0A835Z212_9STRA (ATP-binding cassette sub-family D member 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z212_9STRA)

HSP 1 Score: 134 bits (337), Expect = 2.230e-33
Identity = 68/115 (59.13%), Postives = 84/115 (73.04%), Query Frame = 1
Query:  193 MVPGPASLEVGCLGAVAGLLVARTSLDVVMLNVTTTIEHAIVGRNKAGFTLGILRFARLCVPLAAVNSLLKYFQAELALRFRQRLTEHVLGKYMSGFTYYAVSNLDNRISNPDQV 537
            MVPG  S E G L  VAGLL+ RT LD+ ML +TTT+E AIV R+   F  G+  FA+  VPL+ VNSLLKY Q+E+ALRFRQRLT H++ +YM+GFTYY V+NLD R+ N DQ 
Sbjct:    1 MVPGVLSPEAGFLAGVAGLLLLRTYLDITMLELTTTVERAIVQRDAGSFGRGVRTFAKFMVPLSIVNSLLKYGQSEVALRFRQRLTAHIMDRYMAGFTYYGVTNLDGRLKNVDQA 115          
BLAST of mRNA_C-tenellus_contig8395.1.1 vs. uniprot
Match: A0A3M6VI60_9STRA (Uncharacterized protein n=3 Tax=Peronosporaceae TaxID=4777 RepID=A0A3M6VI60_9STRA)

HSP 1 Score: 134 bits (336), Expect = 3.680e-33
Identity = 75/177 (42.37%), Postives = 108/177 (61.02%), Query Frame = 1
Query:    7 SNSVSFVTMIVTLILVKNYSKSQISSPTEGGTSGFSEGRRGRLKKPRVDMAFVRRIYRLLGVMVPGPASLEVGCLGAVAGLLVARTSLDVVMLNVTTTIEHAIVGRNKAGFTLGILRFARLCVPLAAVNSLLKYFQAELALRFRQRLTEHVLGKYMSGFTYYAVSNLDNRISNPDQV 537
            S  +S  ++I   I ++N+ + Q ++      S F   + GR  +  V+  F  R  RL  ++VPGP + EVG    VA +L+ RTS D+V+L+  T IE AI+ R++  F   + RF  + +P++ VNSLLKY   EL+LRFR RLT H+  +Y+ GF YY VSNLDNRISN DQ+
Sbjct:   11 SGIISIASIITLAIAIRNHGQKQANTGFYR-QSEFLTKKHGRRDRVAVNRDFYGRFLRLFKIIVPGPFTAEVGFAALVAVMLLTRTSFDIVVLHTFTAIERAIISRSQTDFLHHLRRFVAIMLPMSCVNSLLKYGHTELSLRFRTRLTRHLYEQYVKGFVYYKVSNLDNRISNADQL 186          
BLAST of mRNA_C-tenellus_contig8395.1.1 vs. uniprot
Match: A0A2D4CER2_PYTIN (Long chain acyl-CoA transporter ABC transporter n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CER2_PYTIN)

HSP 1 Score: 134 bits (336), Expect = 3.800e-33
Identity = 74/145 (51.03%), Postives = 93/145 (64.14%), Query Frame = 1
Query:  103 SGFSEGRRGRLKKPRVDMAFVRRIYRLLGVMVPGPASLEVGCLGAVAGLLVARTSLDVVMLNVTTTIEHAIVGRNKAGFTLGILRFARLCVPLAAVNSLLKYFQAELALRFRQRLTEHVLGKYMSGFTYYAVSNLDNRISNPDQV 537
            S F   + G  +K  V+  F+RR  RL  V+VPG  + EVG    VA LL ARTS D+ +L + T+IE AI+ R+  GF L + RF  + +P+A VNSLLKY Q EL LRFR RLT H+   Y+ GF YY VSNLDNRI N DQ+
Sbjct:   42 SQFMTKKHGNKQKVAVNQEFLRRFLRLFKVIVPGVFTPEVGYALLVALLLAARTSFDIQILQIMTSIERAIISRSTDGFLLHLRRFLLVMLPVACVNSLLKYGQTELTLRFRDRLTRHLYDLYLKGFVYYKVSNLDNRIGNADQL 186          
BLAST of mRNA_C-tenellus_contig8395.1.1 vs. uniprot
Match: A0A8K1FFC8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FFC8_PYTOL)

HSP 1 Score: 132 bits (332), Expect = 1.300e-32
Identity = 71/145 (48.97%), Postives = 93/145 (64.14%), Query Frame = 1
Query:  103 SGFSEGRRGRLKKPRVDMAFVRRIYRLLGVMVPGPASLEVGCLGAVAGLLVARTSLDVVMLNVTTTIEHAIVGRNKAGFTLGILRFARLCVPLAAVNSLLKYFQAELALRFRQRLTEHVLGKYMSGFTYYAVSNLDNRISNPDQV 537
            S F   + G  +K  ++  F+ R  RL  V+VPG  + EVG    VAGLL ARTS D+++L + T+IE AI+ R+  GF   + RF  + +P++ VN LLKY Q EL LRFR RLT H+   Y+ GF YY VSNLDNRISN DQ+
Sbjct:   42 SQFMTKKHGNKQKVAINKEFLTRFMRLFKVIVPGLVTPEVGYAFLVAGLLAARTSFDILILQIVTSIERAIISRSTEGFMHHLRRFFLVMLPVSCVNCLLKYGQTELTLRFRNRLTRHLYDLYLKGFIYYKVSNLDNRISNADQL 186          
BLAST of mRNA_C-tenellus_contig8395.1.1 vs. uniprot
Match: A0A5D6XLN4_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XLN4_9STRA)

HSP 1 Score: 132 bits (332), Expect = 1.320e-32
Identity = 73/177 (41.24%), Postives = 108/177 (61.02%), Query Frame = 1
Query:    7 SNSVSFVTMIVTLILVKNYSKSQISSPTEGGTSGFSEGRRGRLKKPRVDMAFVRRIYRLLGVMVPGPASLEVGCLGAVAGLLVARTSLDVVMLNVTTTIEHAIVGRNKAGFTLGILRFARLCVPLAAVNSLLKYFQAELALRFRQRLTEHVLGKYMSGFTYYAVSNLDNRISNPDQV 537
            S ++S   ++   I ++++ + ++++      S F   ++G  +K  V+  F  R  +L  V+VPGP + EV     VA LL ARTS D+++L + T+IE AI+ R+   FT  + RF  L +P++ VN LLKY   EL LRFR RLT+H+   Y+ GF YY VSNLDNRISN DQ+
Sbjct:   11 SGALSVSALVAIAIAIRDHGQ-RVANAASRQDSQFMTKKQGNKQKVAVNKEFYLRFVKLFKVIVPGPFTAEVAFAALVAALLAARTSFDIMVLQIITSIERAIISRSTEDFTRHLRRFFVLMLPMSCVNCLLKYGHTELTLRFRNRLTKHLYKHYLKGFIYYKVSNLDNRISNADQL 186          
BLAST of mRNA_C-tenellus_contig8395.1.1 vs. uniprot
Match: A0A0B1T8L4_OESDE (D member 3 domain protein, ATP-binding cassette sub-family n=1 Tax=Oesophagostomum dentatum TaxID=61180 RepID=A0A0B1T8L4_OESDE)

HSP 1 Score: 127 bits (318), Expect = 2.450e-32
Identity = 60/134 (44.78%), Postives = 93/134 (69.40%), Query Frame = 1
Query:  136 KKPRVDMAFVRRIYRLLGVMVPGPASLEVGCLGAVAGLLVARTSLDVVMLNVTTTIEHAIVGRNKAGFTLGILRFARLCVPLAAVNSLLKYFQAELALRFRQRLTEHVLGKYMSGFTYYAVSNLDNRISNPDQV 537
            +K  VD AF R+++R+L +++PGP  +EV  +  +A +L+ RT  D+ M+   T IE  I+ RN+AGF L ++++      ++  N++LK+  +EL LRFR+RLT+H+ GKYM GFT+Y +SNLDNRI N DQ+
Sbjct:   61 EKIHVDGAFARKLFRILRILIPGPLCMEVFYMIVIAVMLICRTYADLYMITKATKIEAVIIDRNQAGFILNVVQYFLAMPAISVTNAILKFGLSELKLRFRERLTKHLYGKYMKGFTFYKMSNLDNRIQNADQL 194          
BLAST of mRNA_C-tenellus_contig8395.1.1 vs. uniprot
Match: A0A662XR71_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XR71_9STRA)

HSP 1 Score: 128 bits (322), Expect = 2.770e-31
Identity = 65/126 (51.59%), Postives = 87/126 (69.05%), Query Frame = 1
Query:  160 FVRRIYRLLGVMVPGPASLEVGCLGAVAGLLVARTSLDVVMLNVTTTIEHAIVGRNKAGFTLGILRFARLCVPLAAVNSLLKYFQAELALRFRQRLTEHVLGKYMSGFTYYAVSNLDNRISNPDQV 537
            F  R  RL  V+VPGP + EVG    VA +LVARTS D+V+L+  T +E AI+ R++  F   + RF  + +P++ VNS+LKY   EL+LRFR RLT+H+  +Y+ GF YY VSNLDNRISN DQ+
Sbjct:   41 FYHRFLRLFKVIVPGPFTAEVGFAALVAVMLVARTSFDIVVLHTFTAVERAIISRSQKDFMHHMRRFVAVMLPMSCVNSMLKYGHTELSLRFRTRLTKHLYAQYVKGFVYYKVSNLDNRISNADQL 166          
BLAST of mRNA_C-tenellus_contig8395.1.1 vs. uniprot
Match: A0A6A3MZQ4_9STRA (ATP-binding cassette sub-family D member 3 n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3MZQ4_9STRA)

HSP 1 Score: 127 bits (319), Expect = 7.450e-31
Identity = 67/133 (50.38%), Postives = 90/133 (67.67%), Query Frame = 1
Query:  139 KPRVDMAFVRRIYRLLGVMVPGPASLEVGCLGAVAGLLVARTSLDVVMLNVTTTIEHAIVGRNKAGFTLGILRFARLCVPLAAVNSLLKYFQAELALRFRQRLTEHVLGKYMSGFTYYAVSNLDNRISNPDQV 537
            K  V+  F RR  RL  V+VPGP S E+G    VA +L A+TS D+VML + T+IE AIV R++  F   + RF  + +PL+ VN LLKY Q+EL+LRFR RLT H+  +Y+ GF YY V+NL+ R+SN DQ+
Sbjct:   47 KVAVNGVFFRRFIRLFRVLVPGPFSAELGFAALVAVMLAAKTSFDIVMLQLLTSIERAIVSRSQQEFLHHLRRFMAVMLPLSCVNCLLKYGQSELSLRFRARLTTHLYAQYLRGFVYYKVANLEPRVSNADQL 179          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8395.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A484E539_BRELC4.650e-3642.37Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
H3GA94_PHYRM2.180e-3351.09Uncharacterized protein n=24 Tax=Phytophthora TaxI... [more]
A0A835Z212_9STRA2.230e-3359.13ATP-binding cassette sub-family D member 3 n=1 Tax... [more]
A0A3M6VI60_9STRA3.680e-3342.37Uncharacterized protein n=3 Tax=Peronosporaceae Ta... [more]
A0A2D4CER2_PYTIN3.800e-3351.03Long chain acyl-CoA transporter ABC transporter n=... [more]
A0A8K1FFC8_PYTOL1.300e-3248.97Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6XLN4_9STRA1.320e-3241.24Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A0B1T8L4_OESDE2.450e-3244.78D member 3 domain protein, ATP-binding cassette su... [more]
A0A662XR71_9STRA2.770e-3151.59Uncharacterized protein (Fragment) n=2 Tax=Nothoph... [more]
A0A6A3MZQ4_9STRA7.450e-3150.38ATP-binding cassette sub-family D member 3 n=5 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8395contigC-tenellus_contig8395:630..2027 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog4792.ETI57219
PFAMsABC_membrane_2,ABC_tran
Model size537
Max annot lvl4776|Peronosporales
KEGG koko:K05677
KEGG TC3.A.1.203.1
KEGG Pathwayko02010,ko04146,map02010,map04146
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.44e-36
EggNOG OGsCOG4178@1|root,KOG0060@2759|Eukaryota,3Q83V@4776|Peronosporales
DescriptionABC transporter transmembrane region 2
Cds size537
COG categoryQ
BRITEko00000,ko00001,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790103.2815816-CDS-C-tenellus_contig8395:629..7701680790103.2815816-CDS-C-tenellus_contig8395:629..770Choristocarpus tenellus KU2346CDSC-tenellus_contig8395 630..770 -
1680790103.2966933-CDS-C-tenellus_contig8395:1234..13981680790103.2966933-CDS-C-tenellus_contig8395:1234..1398Choristocarpus tenellus KU2346CDSC-tenellus_contig8395 1235..1398 -
1680790103.3067422-CDS-C-tenellus_contig8395:1656..17321680790103.3067422-CDS-C-tenellus_contig8395:1656..1732Choristocarpus tenellus KU2346CDSC-tenellus_contig8395 1657..1732 -
1680790103.3216453-CDS-C-tenellus_contig8395:1871..20271680790103.3216453-CDS-C-tenellus_contig8395:1871..2027Choristocarpus tenellus KU2346CDSC-tenellus_contig8395 1872..2027 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8395.1.1prot_C-tenellus_contig8395.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8395 630..2027 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8395.1.1

>prot_C-tenellus_contig8395.1.1 ID=prot_C-tenellus_contig8395.1.1|Name=mRNA_C-tenellus_contig8395.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=179bp
MQSNSVSFVTMIVTLILVKNYSKSQISSPTEGGTSGFSEGRRGRLKKPRV
DMAFVRRIYRLLGVMVPGPASLEVGCLGAVAGLLVARTSLDVVMLNVTTT
IEHAIVGRNKAGFTLGILRFARLCVPLAAVNSLLKYFQAELALRFRQRLT
EHVLGKYMSGFTYYAVSNLDNRISNPDQV
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mRNA from alignment at C-tenellus_contig8395:630..2027-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8395.1.1 ID=mRNA_C-tenellus_contig8395.1.1|Name=mRNA_C-tenellus_contig8395.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1398bp|location=Sequence derived from alignment at C-tenellus_contig8395:630..2027- (Choristocarpus tenellus KU2346)
ATGCAATCGAACAGTGTCTCCTTCGTTACCATGATCGTGACTCTCATCCT CGTCAAGAATTACTCTAAGTCGCAGATTTCTTCACCTACGGAAGGTGGTA CGAGTGGATTTTCTGAGGGTAGACGAGGAAGGTTAAAGAAGCCCCGTGTG GATATGGTAAGAACCGTACATCTTGTTCAACGGTGGTTTCGTCTATAGCA AACTCGAGATAGGTTGTGCTTACTACCGAACGAGTACGACGCCGCGAACA TCCCTCCCCCCCCCCTCCCCCCCAACCCGATATTTTTATCCCCAGGCGTT CGTAAGACGTATCTACCGATTGCTAGGAGTGATGGTCCCTGGTCCTGCTT CGTTGGAGGTCGGTTGTCTAGGTGAGACCCGTTCCAACTTTGCCATGTCT GGACGATCCCTATACCATAGCTGAAGAAATACCAAGTCCAATAGAGATGT CAATTTCTAGTTACTCATACGAGTAGGATTAGGATGAGTTGTCGTGCGCA GCGCGGAGAGTCCTGACATCGGTGGTCCATCTTGGACCCACCCTCTCGTC GTATTTCCACCATCCACTTGGCATTCTTCTGATTGCTGCGTACCTCTACC TGCTCAATTGCTCATTTAAACTGTTGCAGGTGCAGTTGCCGGCCTCTTGG TGGCCAGGACGTCCTTGGATGTTGTAATGCTTAACGTCACTACCACAATT GAACACGCGATAGTGGGAAGGAACAAGGCCGGGTTCACCTTAGGCATCTT GCGCTTCGCTCGTCTATGTGTGCCTTTGGCGGCAGTTAACTCTGTGAGTA CGGGGGACTGCAAACAGTCACCATCGGATGGATGAGGGGGGAACCATGTT GACTGCTATTTGGGCACAATTTCGTGCGGTAGTGGGCACAATCAACATTG AGGCCTCACGTGCTCCTCAGTTTCGCGTTGCGAAGGTCTCTCTCTTGCAG GGCAAAGATCTCAACTTTGCATCATCATGTAGAGTCACTACCGTAGCTAT CCTTCTTAAAAACGTGATCTTTATCTGTGCCTCGCTCGTTCCTAGGATTA CAAGGTCGTGGGTTTGTTTGACCCACGTGTCTTGCTGAATCCAGTGCCGA CAGATGCCCGTCATGGAAAACTCCGCCACCCACTGACCTATCCAAGAGAA AACACTTACCCCGTCCCTAATCCCCAATCTGTGTAGGTGCTACCACCCTC TCGTAATCATGCTAGTGTCTCCCCCCCCATCTGGATTCTCCTCTCTACCT GTCACAGCTTTTGAAGTATTTTCAGGCAGAGCTGGCTCTTCGGTTCCGCC AGCGTCTTACCGAGCATGTATTGGGGAAGTACATGTCCGGATTCACGTAC TATGCTGTGTCCAACCTTGATAATCGCATTTCTAATCCTGATCAGGTA
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Coding sequence (CDS) from alignment at C-tenellus_contig8395:630..2027-

>mRNA_C-tenellus_contig8395.1.1 ID=mRNA_C-tenellus_contig8395.1.1|Name=mRNA_C-tenellus_contig8395.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=537bp|location=Sequence derived from alignment at C-tenellus_contig8395:630..2027- (Choristocarpus tenellus KU2346)
ATGCAATCGAACAGTGTCTCCTTCGTTACCATGATCGTGACTCTCATCCT
CGTCAAGAATTACTCTAAGTCGCAGATTTCTTCACCTACGGAAGGTGGTA
CGAGTGGATTTTCTGAGGGTAGACGAGGAAGGTTAAAGAAGCCCCGTGTG
GATATGGCGTTCGTAAGACGTATCTACCGATTGCTAGGAGTGATGGTCCC
TGGTCCTGCTTCGTTGGAGGTCGGTTGTCTAGGTGCAGTTGCCGGCCTCT
TGGTGGCCAGGACGTCCTTGGATGTTGTAATGCTTAACGTCACTACCACA
ATTGAACACGCGATAGTGGGAAGGAACAAGGCCGGGTTCACCTTAGGCAT
CTTGCGCTTCGCTCGTCTATGTGTGCCTTTGGCGGCAGTTAACTCTCTTT
TGAAGTATTTTCAGGCAGAGCTGGCTCTTCGGTTCCGCCAGCGTCTTACC
GAGCATGTATTGGGGAAGTACATGTCCGGATTCACGTACTATGCTGTGTC
CAACCTTGATAATCGCATTTCTAATCCTGATCAGGTA
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